Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGTTTAAAGGAGAGTCTTAAGGAGGAGCGCTTGAGCTTAAAGATGGGGTTTGCGGAGGTGGTTAGGAAAGAAACTAGTAGTTGGAGGCAAAAAGCCAAGATAAATTGGGCCAAGGAAGGGGATTGCAACTCGACTTTCTTTCATCGGATGGCTAGTGGTAGGAAAAGTAAGAATATCATTAATTCCTTGGTTACCAGGGAAGGGGAAGAGGTGAGAGATCTGAGGGCTATCGAGGGAGAAATTCTTTCATTTTTCTCGAGTTTGTATGGGCCTCCGATAGCTGGTAGACCTTTTGTGGAAGACATAGATTGGTGTCCCATTTCTGAGGTGGACAGGAGGGAGGTGGAGTCTCCTTTCACTATGGAAGAGATTAAGAAGGCTATTTTCGATTGTGATAGAAATAAGTCTCTAGGTCCTGATGGCTTTTCGATGGGCTTTTTTTTAGGATAA
mRNA sequence
ATGGGGAGTTTAAAGGAGAGTCTTAAGGAGGAGCGCTTGAGCTTAAAGATGGGGTTTGCGGAGGTGGTTAGGAAAGAAACTAGTAGTTGGAGGCAAAAAGCCAAGATAAATTGGGCCAAGGAAGGGGATTGCAACTCGACTTTCTTTCATCGGATGGCTAGTGGTAGGAAAAGTAAGAATATCATTAATTCCTTGGTTACCAGGGAAGGGGAAGAGGTGAGAGATCTGAGGGCTATCGAGGGAGAAATTCTTTCATTTTTCTCGAGTTTGTATGGGCCTCCGATAGCTGGTAGACCTTTTGTGGAAGACATAGATTGGTGTCCCATTTCTGAGGTGGACAGGAGGGAGGTGGAGTCTCCTTTCACTATGGAAGAGATTAAGAAGGCTATTTTCGATTGTGATAGAAATAAGTCTCTAGGTCCTGATGGCTTTTCGATGGGCTTTTTTTTAGGATAA
Coding sequence (CDS)
ATGGGGAGTTTAAAGGAGAGTCTTAAGGAGGAGCGCTTGAGCTTAAAGATGGGGTTTGCGGAGGTGGTTAGGAAAGAAACTAGTAGTTGGAGGCAAAAAGCCAAGATAAATTGGGCCAAGGAAGGGGATTGCAACTCGACTTTCTTTCATCGGATGGCTAGTGGTAGGAAAAGTAAGAATATCATTAATTCCTTGGTTACCAGGGAAGGGGAAGAGGTGAGAGATCTGAGGGCTATCGAGGGAGAAATTCTTTCATTTTTCTCGAGTTTGTATGGGCCTCCGATAGCTGGTAGACCTTTTGTGGAAGACATAGATTGGTGTCCCATTTCTGAGGTGGACAGGAGGGAGGTGGAGTCTCCTTTCACTATGGAAGAGATTAAGAAGGCTATTTTCGATTGTGATAGAAATAAGTCTCTAGGTCCTGATGGCTTTTCGATGGGCTTTTTTTTAGGATAA
Protein sequence
MGSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNIINSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPFTMEEIKKAIFDCDRNKSLGPDGFSMGFFLG
Homology
BLAST of Lcy01g005420.1 vs. ExPASy Swiss-Prot
Match:
P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08
Identity = 40/150 (26.67%), Postives = 74/150 (49.33%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
GS ++L+ E L K + +++ ++++ + D S FF+ + + ++
Sbjct: 328 GSEDQALQCEYLERKEALRNMEQRQARGAFVRSRMQLLCDMDRGSRFFYALEKKKGNRKQ 387
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGP-PIAGRPFVEDIDWCP-ISEVDRREVES 121
I L +G + D AI SF+ +L+ P PI+ E D P +SE + +E+
Sbjct: 388 ITCLFAEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDACEELWDGLPVVSERRKERLET 447
Query: 122 PFTMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
P T++E+ +A+ NKS G DG ++ FF
Sbjct: 448 PITLDELSQALRLMPHNKSPGLDGLTIEFF 477
BLAST of Lcy01g005420.1 vs. ExPASy TrEMBL
Match:
A0A5D3BW32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00830 PE=4 SV=1)
HSP 1 Score: 147.5 bits (371), Expect = 4.5e-32
Identity = 69/149 (46.31%), Postives = 98/149 (65.77%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
G L +LKEER+S K AE++RKE SW QK+KI W KEGDCN++FFHR A+ R++KN
Sbjct: 451 GPLDSALKEERVSSKGDLAEMIRKENVSWSQKSKIKWTKEGDCNNSFFHRAANDRRNKNH 510
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
+ L+ G+ RD I+ EI+ FS+ Y + +P +E IDW PI + ++ F
Sbjct: 511 LGLLLLDNGKSTRDGMEIDEEIIRSFSNFYSSKVWDKPLLEGIDWSPILTREDGDLVVSF 570
Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFFL 151
T++E+KK +F+CD NK G DGFS+ FF+
Sbjct: 571 TLDELKKVVFNCDENKFSGVDGFSVTFFI 599
BLAST of Lcy01g005420.1 vs. ExPASy TrEMBL
Match:
A0A438IAX3 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_367 PE=4 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 9.3e-30
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
G L L +R+S K E++ +E WRQKAK+ W KEGDCNS F+H++ +GR+++
Sbjct: 317 GGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVTNGRRNRKY 376
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
I L G +++ +I EIL +F LY P VE +DW PISE +ESPF
Sbjct: 377 IKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALRLESPF 436
Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
T EEI KAIF DR+K+LGPDGF++ F
Sbjct: 437 TEEEISKAIFQLDRDKALGPDGFTIAIF 464
BLAST of Lcy01g005420.1 vs. ExPASy TrEMBL
Match:
A0A438I444 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_82 PE=4 SV=1)
HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
G L L +R S K E++ +E WRQKAK+ W KEGDCNS F+H++A+GR+++
Sbjct: 76 GGLNPDLLSQRASRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRKY 135
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
I L G +++ +I EIL +F LY PI VE +DW PISE ++SPF
Sbjct: 136 IKELENERGLVLKNAESITEEILHYFEKLYTNPIGESWGVEGLDWSPISEESALRLDSPF 195
Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
T EEI KAIF DR+K+ GPDGF++ F
Sbjct: 196 TEEEISKAIFQLDRDKAPGPDGFTIAVF 223
BLAST of Lcy01g005420.1 vs. ExPASy TrEMBL
Match:
A5BZE1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033371 PE=4 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 2.7e-29
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
G L L +R S K E++ +E WRQK+++ W KEGDCNS F+H+MA+GR+++
Sbjct: 889 GGLNSDLLSQRASRKGELEELILREEIHWRQKSRVKWVKEGDCNSKFYHKMANGRRNRKY 948
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
I L G +++ +I EIL +F LY PI VE +DW PISE ++SPF
Sbjct: 949 IKELENERGLLLKNAESITEEILHYFEKLYTSPIGESWGVEGLDWSPISEESALRLDSPF 1008
Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
T EEI KAIF DR+K+ GPDGF++ F
Sbjct: 1009 TEEEISKAIFQLDRDKAPGPDGFTIAVF 1036
BLAST of Lcy01g005420.1 vs. ExPASy TrEMBL
Match:
A0A438I435 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_401 PE=4 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 2.7e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
G L L +R+S K E++ +E WRQKAK+ W KEGDCNS F+H++A+GR+++
Sbjct: 444 GGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRKY 503
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
I L G +++ +I EIL +F LY P VE +DW PISE +ESPF
Sbjct: 504 IKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALRLESPF 563
Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
T EEI KAIF DR+K+ GPDGF++ F
Sbjct: 564 TEEEISKAIFQLDRDKAPGPDGFTIAVF 591
BLAST of Lcy01g005420.1 vs. NCBI nr
Match:
TYK03178.1 (hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa])
HSP 1 Score: 147.5 bits (371), Expect = 9.2e-32
Identity = 69/149 (46.31%), Postives = 98/149 (65.77%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
G L +LKEER+S K AE++RKE SW QK+KI W KEGDCN++FFHR A+ R++KN
Sbjct: 451 GPLDSALKEERVSSKGDLAEMIRKENVSWSQKSKIKWTKEGDCNNSFFHRAANDRRNKNH 510
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
+ L+ G+ RD I+ EI+ FS+ Y + +P +E IDW PI + ++ F
Sbjct: 511 LGLLLLDNGKSTRDGMEIDEEIIRSFSNFYSSKVWDKPLLEGIDWSPILTREDGDLVVSF 570
Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFFL 151
T++E+KK +F+CD NK G DGFS+ FF+
Sbjct: 571 TLDELKKVVFNCDENKFSGVDGFSVTFFI 599
BLAST of Lcy01g005420.1 vs. NCBI nr
Match:
RVW93866.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 139.8 bits (351), Expect = 1.9e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
G L L +R+S K E++ +E WRQKAK+ W KEGDCNS F+H++ +GR+++
Sbjct: 317 GGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVTNGRRNRKY 376
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
I L G +++ +I EIL +F LY P VE +DW PISE +ESPF
Sbjct: 377 IKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALRLESPF 436
Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
T EEI KAIF DR+K+LGPDGF++ F
Sbjct: 437 TEEEISKAIFQLDRDKALGPDGFTIAIF 464
BLAST of Lcy01g005420.1 vs. NCBI nr
Match:
RVW91479.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 138.7 bits (348), Expect = 4.3e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
G L L +R S K E++ +E WRQKAK+ W KEGDCNS F+H++A+GR+++
Sbjct: 76 GGLNPDLLSQRASRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRKY 135
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
I L G +++ +I EIL +F LY PI VE +DW PISE ++SPF
Sbjct: 136 IKELENERGLVLKNAESITEEILHYFEKLYTNPIGESWGVEGLDWSPISEESALRLDSPF 195
Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
T EEI KAIF DR+K+ GPDGF++ F
Sbjct: 196 TEEEISKAIFQLDRDKAPGPDGFTIAVF 223
BLAST of Lcy01g005420.1 vs. NCBI nr
Match:
RVW33934.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 138.3 bits (347), Expect = 5.6e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
G L L +R+S K E++ +E WRQKAK+ W KEGDCNS F+H++A+GR+++
Sbjct: 131 GGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRKY 190
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
I L G +++ +I EIL +F LY P VE +DW PISE +ESPF
Sbjct: 191 IKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALRLESPF 250
Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
T EEI KAIF DR+K+ GPDGF++ F
Sbjct: 251 TEEEISKAIFQLDRDKAPGPDGFTIAVF 278
BLAST of Lcy01g005420.1 vs. NCBI nr
Match:
RVW91468.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 138.3 bits (347), Expect = 5.6e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0
Query: 2 GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
G L L +R+S K E++ +E WRQKAK+ W KEGDCNS F+H++A+GR+++
Sbjct: 444 GGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRKY 503
Query: 62 INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
I L G +++ +I EIL +F LY P VE +DW PISE +ESPF
Sbjct: 504 IKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALRLESPF 563
Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
T EEI KAIF DR+K+ GPDGF++ F
Sbjct: 564 TEEEISKAIFQLDRDKAPGPDGFTIAVF 591
BLAST of Lcy01g005420.1 vs. TAIR 10
Match:
AT1G43760.1 (DNAse I-like superfamily protein )
HSP 1 Score: 65.5 bits (158), Expect = 4.3e-11
Identity = 37/129 (28.68%), Postives = 69/129 (53.49%), Query Frame = 0
Query: 28 SSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNIINSLVTREGEEVRDLRAIEGEILSFF 87
S +RQK++I W ++GD N+ FFH++ ++KN+I L + V ++ ++ I++++
Sbjct: 433 SFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYY 492
Query: 88 SSLYG-------PPIAGRPFVEDIDWCPISEVDRREVESPFTMEEIKKAIFDCDRNKSLG 147
+ L G P R ++DI ++ + + + +EI A+F RNK+ G
Sbjct: 493 THLLGSDSDILTPDSVQR--IKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPG 552
Query: 148 PDGFSMGFF 150
PD F+ FF
Sbjct: 553 PDSFTAEFF 559
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P14381 | 5.6e-08 | 26.67 | Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3BW32 | 4.5e-32 | 46.31 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A438IAX3 | 9.3e-30 | 45.27 | Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... | [more] |
A0A438I444 | 2.1e-29 | 45.27 | Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... | [more] |
A5BZE1 | 2.7e-29 | 44.59 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033371 PE=4 SV=1 | [more] |
A0A438I435 | 2.7e-29 | 45.27 | Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... | [more] |
Match Name | E-value | Identity | Description | |
TYK03178.1 | 9.2e-32 | 46.31 | hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa] | [more] |
RVW93866.1 | 1.9e-29 | 45.27 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
RVW91479.1 | 4.3e-29 | 45.27 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
RVW33934.1 | 5.6e-29 | 45.27 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
RVW91468.1 | 5.6e-29 | 45.27 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
AT1G43760.1 | 4.3e-11 | 28.68 | DNAse I-like superfamily protein | [more] |