Lcy01g005420 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g005420
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	Chr01: 7521423 .. 7521878 (-)
RNA-Seq Expression	Lcy01g005420
Synteny	Lcy01g005420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGTTTAAAGGAGAGTCTTAAGGAGGAGCGCTTGAGCTTAAAGATGGGGTTTGCGGAGGTGGTTAGGAAAGAAACTAGTAGTTGGAGGCAAAAAGCCAAGATAAATTGGGCCAAGGAAGGGGATTGCAACTCGACTTTCTTTCATCGGATGGCTAGTGGTAGGAAAAGTAAGAATATCATTAATTCCTTGGTTACCAGGGAAGGGGAAGAGGTGAGAGATCTGAGGGCTATCGAGGGAGAAATTCTTTCATTTTTCTCGAGTTTGTATGGGCCTCCGATAGCTGGTAGACCTTTTGTGGAAGACATAGATTGGTGTCCCATTTCTGAGGTGGACAGGAGGGAGGTGGAGTCTCCTTTCACTATGGAAGAGATTAAGAAGGCTATTTTCGATTGTGATAGAAATAAGTCTCTAGGTCCTGATGGCTTTTCGATGGGCTTTTTTTTAGGATAA

mRNA sequence

ATGGGGAGTTTAAAGGAGAGTCTTAAGGAGGAGCGCTTGAGCTTAAAGATGGGGTTTGCGGAGGTGGTTAGGAAAGAAACTAGTAGTTGGAGGCAAAAAGCCAAGATAAATTGGGCCAAGGAAGGGGATTGCAACTCGACTTTCTTTCATCGGATGGCTAGTGGTAGGAAAAGTAAGAATATCATTAATTCCTTGGTTACCAGGGAAGGGGAAGAGGTGAGAGATCTGAGGGCTATCGAGGGAGAAATTCTTTCATTTTTCTCGAGTTTGTATGGGCCTCCGATAGCTGGTAGACCTTTTGTGGAAGACATAGATTGGTGTCCCATTTCTGAGGTGGACAGGAGGGAGGTGGAGTCTCCTTTCACTATGGAAGAGATTAAGAAGGCTATTTTCGATTGTGATAGAAATAAGTCTCTAGGTCCTGATGGCTTTTCGATGGGCTTTTTTTTAGGATAA

Coding sequence (CDS)

ATGGGGAGTTTAAAGGAGAGTCTTAAGGAGGAGCGCTTGAGCTTAAAGATGGGGTTTGCGGAGGTGGTTAGGAAAGAAACTAGTAGTTGGAGGCAAAAAGCCAAGATAAATTGGGCCAAGGAAGGGGATTGCAACTCGACTTTCTTTCATCGGATGGCTAGTGGTAGGAAAAGTAAGAATATCATTAATTCCTTGGTTACCAGGGAAGGGGAAGAGGTGAGAGATCTGAGGGCTATCGAGGGAGAAATTCTTTCATTTTTCTCGAGTTTGTATGGGCCTCCGATAGCTGGTAGACCTTTTGTGGAAGACATAGATTGGTGTCCCATTTCTGAGGTGGACAGGAGGGAGGTGGAGTCTCCTTTCACTATGGAAGAGATTAAGAAGGCTATTTTCGATTGTGATAGAAATAAGTCTCTAGGTCCTGATGGCTTTTCGATGGGCTTTTTTTTAGGATAA

Protein sequence

MGSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNIINSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPFTMEEIKKAIFDCDRNKSLGPDGFSMGFFLG

Homology

[Close]

BLAST of Lcy01g005420 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08
Identity = 40/150 (26.67%), Postives = 74/150 (49.33%), Query Frame = 0


Query: 2   GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
           GS  ++L+ E L  K     + +++      ++++    + D  S FF+ +   + ++  
Sbjct: 328 GSEDQALQCEYLERKEALRNMEQRQARGAFVRSRMQLLCDMDRGSRFFYALEKKKGNRKQ 387

Query: 62  INSLVTREGEEVRDLRAIEGEILSFFSSLYGP-PIAGRPFVEDIDWCP-ISEVDRREVES 121
           I  L   +G  + D  AI     SF+ +L+ P PI+     E  D  P +SE  +  +E+
Sbjct: 388 ITCLFAEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDACEELWDGLPVVSERRKERLET 447

Query: 122 PFTMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
           P T++E+ +A+     NKS G DG ++ FF
Sbjct: 448 PITLDELSQALRLMPHNKSPGLDGLTIEFF 477

[Close]

BLAST of Lcy01g005420 vs. ExPASy TrEMBL
Match: A0A5D3BW32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00830 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.5e-32
Identity = 69/149 (46.31%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 2   GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
           G L  +LKEER+S K   AE++RKE  SW QK+KI W KEGDCN++FFHR A+ R++KN 
Sbjct: 451 GPLDSALKEERVSSKGDLAEMIRKENVSWSQKSKIKWTKEGDCNNSFFHRAANDRRNKNH 510

Query: 62  INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
           +  L+   G+  RD   I+ EI+  FS+ Y   +  +P +E IDW PI   +  ++   F
Sbjct: 511 LGLLLLDNGKSTRDGMEIDEEIIRSFSNFYSSKVWDKPLLEGIDWSPILTREDGDLVVSF 570

Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFFL 151
           T++E+KK +F+CD NK  G DGFS+ FF+
Sbjct: 571 TLDELKKVVFNCDENKFSGVDGFSVTFFI 599

[Close]

BLAST of Lcy01g005420 vs. ExPASy TrEMBL
Match: A0A438IAX3 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_367 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 9.3e-30
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 2   GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
           G L   L  +R+S K    E++ +E   WRQKAK+ W KEGDCNS F+H++ +GR+++  
Sbjct: 317 GGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVTNGRRNRKY 376

Query: 62  INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
           I  L    G  +++  +I  EIL +F  LY  P      VE +DW PISE     +ESPF
Sbjct: 377 IKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALRLESPF 436

Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
           T EEI KAIF  DR+K+LGPDGF++  F
Sbjct: 437 TEEEISKAIFQLDRDKALGPDGFTIAIF 464

[Close]

BLAST of Lcy01g005420 vs. ExPASy TrEMBL
Match: A0A438I444 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_82 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 2   GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
           G L   L  +R S K    E++ +E   WRQKAK+ W KEGDCNS F+H++A+GR+++  
Sbjct: 76  GGLNPDLLSQRASRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRKY 135

Query: 62  INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
           I  L    G  +++  +I  EIL +F  LY  PI     VE +DW PISE     ++SPF
Sbjct: 136 IKELENERGLVLKNAESITEEILHYFEKLYTNPIGESWGVEGLDWSPISEESALRLDSPF 195

Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
           T EEI KAIF  DR+K+ GPDGF++  F
Sbjct: 196 TEEEISKAIFQLDRDKAPGPDGFTIAVF 223

[Close]

BLAST of Lcy01g005420 vs. ExPASy TrEMBL
Match: A5BZE1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033371 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.7e-29
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 2    GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
            G L   L  +R S K    E++ +E   WRQK+++ W KEGDCNS F+H+MA+GR+++  
Sbjct: 889  GGLNSDLLSQRASRKGELEELILREEIHWRQKSRVKWVKEGDCNSKFYHKMANGRRNRKY 948

Query: 62   INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
            I  L    G  +++  +I  EIL +F  LY  PI     VE +DW PISE     ++SPF
Sbjct: 949  IKELENERGLLLKNAESITEEILHYFEKLYTSPIGESWGVEGLDWSPISEESALRLDSPF 1008

Query: 122  TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
            T EEI KAIF  DR+K+ GPDGF++  F
Sbjct: 1009 TEEEISKAIFQLDRDKAPGPDGFTIAVF 1036

[Close]

BLAST of Lcy01g005420 vs. ExPASy TrEMBL
Match: A0A438I435 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_401 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.7e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 2   GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
           G L   L  +R+S K    E++ +E   WRQKAK+ W KEGDCNS F+H++A+GR+++  
Sbjct: 444 GGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRKY 503

Query: 62  INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
           I  L    G  +++  +I  EIL +F  LY  P      VE +DW PISE     +ESPF
Sbjct: 504 IKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALRLESPF 563

Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
           T EEI KAIF  DR+K+ GPDGF++  F
Sbjct: 564 TEEEISKAIFQLDRDKAPGPDGFTIAVF 591

[Close]

BLAST of Lcy01g005420 vs. NCBI nr
Match: TYK03178.1 (hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 9.2e-32
Identity = 69/149 (46.31%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 2   GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
           G L  +LKEER+S K   AE++RKE  SW QK+KI W KEGDCN++FFHR A+ R++KN 
Sbjct: 451 GPLDSALKEERVSSKGDLAEMIRKENVSWSQKSKIKWTKEGDCNNSFFHRAANDRRNKNH 510

Query: 62  INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
           +  L+   G+  RD   I+ EI+  FS+ Y   +  +P +E IDW PI   +  ++   F
Sbjct: 511 LGLLLLDNGKSTRDGMEIDEEIIRSFSNFYSSKVWDKPLLEGIDWSPILTREDGDLVVSF 570

Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFFL 151
           T++E+KK +F+CD NK  G DGFS+ FF+
Sbjct: 571 TLDELKKVVFNCDENKFSGVDGFSVTFFI 599

[Close]

BLAST of Lcy01g005420 vs. NCBI nr
Match: RVW93866.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 2   GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
           G L   L  +R+S K    E++ +E   WRQKAK+ W KEGDCNS F+H++ +GR+++  
Sbjct: 317 GGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVTNGRRNRKY 376

Query: 62  INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
           I  L    G  +++  +I  EIL +F  LY  P      VE +DW PISE     +ESPF
Sbjct: 377 IKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALRLESPF 436

Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
           T EEI KAIF  DR+K+LGPDGF++  F
Sbjct: 437 TEEEISKAIFQLDRDKALGPDGFTIAIF 464

[Close]

BLAST of Lcy01g005420 vs. NCBI nr
Match: RVW91479.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 2   GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
           G L   L  +R S K    E++ +E   WRQKAK+ W KEGDCNS F+H++A+GR+++  
Sbjct: 76  GGLNPDLLSQRASRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRKY 135

Query: 62  INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
           I  L    G  +++  +I  EIL +F  LY  PI     VE +DW PISE     ++SPF
Sbjct: 136 IKELENERGLVLKNAESITEEILHYFEKLYTNPIGESWGVEGLDWSPISEESALRLDSPF 195

Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
           T EEI KAIF  DR+K+ GPDGF++  F
Sbjct: 196 TEEEISKAIFQLDRDKAPGPDGFTIAVF 223

[Close]

BLAST of Lcy01g005420 vs. NCBI nr
Match: RVW33934.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 138.3 bits (347), Expect = 5.6e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 2   GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
           G L   L  +R+S K    E++ +E   WRQKAK+ W KEGDCNS F+H++A+GR+++  
Sbjct: 131 GGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRKY 190

Query: 62  INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
           I  L    G  +++  +I  EIL +F  LY  P      VE +DW PISE     +ESPF
Sbjct: 191 IKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALRLESPF 250

Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
           T EEI KAIF  DR+K+ GPDGF++  F
Sbjct: 251 TEEEISKAIFQLDRDKAPGPDGFTIAVF 278

[Close]

BLAST of Lcy01g005420 vs. NCBI nr
Match: RVW91468.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 138.3 bits (347), Expect = 5.6e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 2   GSLKESLKEERLSLKMGFAEVVRKETSSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNI 61
           G L   L  +R+S K    E++ +E   WRQKAK+ W KEGDCNS F+H++A+GR+++  
Sbjct: 444 GGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRKY 503

Query: 62  INSLVTREGEEVRDLRAIEGEILSFFSSLYGPPIAGRPFVEDIDWCPISEVDRREVESPF 121
           I  L    G  +++  +I  EIL +F  LY  P      VE +DW PISE     +ESPF
Sbjct: 504 IKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALRLESPF 563

Query: 122 TMEEIKKAIFDCDRNKSLGPDGFSMGFF 150
           T EEI KAIF  DR+K+ GPDGF++  F
Sbjct: 564 TEEEISKAIFQLDRDKAPGPDGFTIAVF 591

[Close]

BLAST of Lcy01g005420 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-11
Identity = 37/129 (28.68%), Postives = 69/129 (53.49%), Query Frame = 0


Query: 28  SSWRQKAKINWAKEGDCNSTFFHRMASGRKSKNIINSLVTREGEEVRDLRAIEGEILSFF 87
           S +RQK++I W ++GD N+ FFH++    ++KN+I  L   +   V ++  ++  I++++
Sbjct: 433 SFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYY 492

Query: 88  SSLYG-------PPIAGRPFVEDIDWCPISEVDRREVESPFTMEEIKKAIFDCDRNKSLG 147
           + L G       P    R  ++DI     ++     + +  + +EI  A+F   RNK+ G
Sbjct: 493 THLLGSDSDILTPDSVQR--IKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPG 552

Query: 148 PDGFSMGFF 150
           PD F+  FF
Sbjct: 553 PDSFTAEFF 559

The following BLAST results are available for this feature:

BLAST of Lcy01g005420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14381	5.6e-08	26.67	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV...	[more]

BLAST of Lcy01g005420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BW32	4.5e-32	46.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A438IAX3	9.3e-30	45.27	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438I444	2.1e-29	45.27	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A5BZE1	2.7e-29	44.59	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033371 PE=4 SV=1	[more]
A0A438I435	2.7e-29	45.27	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]

BLAST of Lcy01g005420 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03178.1	9.2e-32	46.31	hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa]	[more]
RVW93866.1	1.9e-29	45.27	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW91479.1	4.3e-29	45.27	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW33934.1	5.6e-29	45.27	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW91468.1	5.6e-29	45.27	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]

BLAST of Lcy01g005420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	4.3e-11	28.68	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33710:SF24	SUBFAMILY NOT NAMED	coord: 13..149
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 13..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g005420.1	Lcy01g005420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process