Lcy01g003700.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy01g003700.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr01: 4468961 .. 4471003 (+)
Sequence length	825
RNA-Seq Expression	Lcy01g003700.1
Synteny	Lcy01g003700.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTAGGGTTTTGAATGTCTGAAAATTTGGGGGAAATCTCTTAATTTTGGGACATTTGGATCTTGAAAGCCCAGCCCATCATGGAGTGAAATAGAAGCCCAATTACTCTAAGGTTGCCAGTCCCATTAACCCAATGGCTCAATAAGAGAAAAACAAAAAAGATTCTATATATATATATATATTTTTTTGAGTACATCAACATTCAGGGGTGGGGGGATTCGAACCTTTGACCTCATGGTCGAGGGTACATGCCAATTACGAGCTAAGCTCACTTTGGCCAAAAAAGATTCTATATTTTTCAATATTAACTTTGCCAACATGAGTTTAATTCAACTAGCATAAAGTTGTACTGATGACCAAGAGATTTGTGGTTTTGATTGTTTGCATGACATCGTGGCAACGATGAAGCTCGATATAGATAGAGCATGTGATCGTGTTGAATGGATTTATTTACATCGAGTTATTTGGAGTCAATCCGTTTATTTATTTCTTATTTTATTTGTATACTTTTGAATGAAAAGCCACAACAAGAATTTGCTCTGTTATGTAGACTTCATTAGGGAGATCTCATTTCCATTTTCCCCTATCTTTTTCTAATTTGTGCTAAAGGGTTGTATGCACTTTTATACATGGAAGAAGAACTACTTAAATTTTCTGGATTAAAGATTAATAATATTGCGTAGTTGTGAACCATCTTTTCAAGGCACATGTTCTTCAAAGAAACGCTTAAGGATAGTCAAATGATTAAGCAAACTCTCTCTACTTGTGAAAAGGCGTTTCGAGAAATGATCAATTATGCCAAGTTAATGTTTATGGTTAGCAAGAATACATATCCAAACATGATGGAGATTAATAAAAGGAAATTACATATGGGATAAGAAAAACGACATTTTTACGGTGAAGAACGCCTATCACTTGGCTACCAACCTAGCCCAAGCGGAGGTTCCTTCAAGCTCGGACGATTCCCATGCCAAATCCCTATGGAAGTCCATCTGGAATCTCAATTGCCTCCCTAGAGCTAAAATCATGGTTTGGAAAGTGGTTAAGGATATTCTTCCTACCCAATTGAATATTATCAAAATAGAGGCGTAAATACTAACTCTCTGTGTCTTCTTTACAGGACAAAAAGGGAGTCGACAGGGCATATTTTCTGGTCTTGTAAGGTGGCTAGGAAGGTTTGGGTTTTTTTCTTCCCGGTCTTAAAAAGTTTTCTTAATTCTGTTAGGGATTGCTGGACTCCCCCAGACTATTGGCAAAGGCTTGCTAGCATTCTCAACATCAGAGATCAAAACAAAGCGGCCATTATCATCTGGTGCCTCTGGTTCGAAAGAAATTCAAGCAAGCATAGTGGGAAGATGGCAGATATAGAGAAAATAATCCTATCCATCAGTAAATATTTAGAAGAGTTTGAAAGGAAAGTAGTACCTGCTCGCTCGTCGGATCGATCAGAGAATCAAGCGAGTCATGGCAGTTGGTCCCCGCCGGCATCTGGTTCCTTTAAATTGAACGCCGATGCCTCCTGGTGTGATCGCTCAAATTCAGGAGGGGTGGGGTGCATTCTCCGTGACTCGAATGGTTCTCTCATCTTGGCGGGCTGCAAGCAGATTCCCTATCGATGGGATATTAAAACCCTCGAATCTTATGCCATTCATGAAGGGTTAGAGTCTTACGTGAAGGCTCTGGAAGAACTAGATCTCAGACAAAAGCCCCCCCTTGAGGTTGAGTTGGACTCCAGTGCGGCGATTAAAGCGATCACCCGTGCAGAAGAAGATCAATCGGAGCTCTCATTGTTCGTTGAGGGAGTCACTGATCTGATCCCAGCAGCAAACGCCGTCCGGTTTTCTAAATGCTCGAGAGCAGCGAATGTAGGCGCACACAATTTGGTGCGAGCAAGTCTTCAAGTTGGGGATTTTAGTTTTTTTGGGCGTTTCTTGTCCCCTAATTTCGTTCATTCTTTTTTGGAAAGGGAGGTCCGTCTCCCTAACTGGTTTTCTTCTATTTTAGAAGAAATTGATTGTAGTTTGGTTCCTTCTCTCTAA

mRNA sequence

ATGAGTTTAGGGGATTGCTGGACTCCCCCAGACTATTGGCAAAGGCTTGCTAGCATTCTCAACATCAGAGATCAAAACAAAGCGGCCATTATCATCTGGTGCCTCTGGTTCGAAAGAAATTCAAGCAAGCATAGTGGGAAGATGGCAGATATAGAGAAAATAATCCTATCCATCAGTAAATATTTAGAAGAGTTTGAAAGGAAAGTAGTACCTGCTCGCTCGTCGGATCGATCAGAGAATCAAGCGAGTCATGGCAGTTGGTCCCCGCCGGCATCTGGTTCCTTTAAATTGAACGCCGATGCCTCCTGGTGTGATCGCTCAAATTCAGGAGGGGTGGGGTGCATTCTCCGTGACTCGAATGGTTCTCTCATCTTGGCGGGCTGCAAGCAGATTCCCTATCGATGGGATATTAAAACCCTCGAATCTTATGCCATTCATGAAGGGTTAGAGTCTTACGTGAAGGCTCTGGAAGAACTAGATCTCAGACAAAAGCCCCCCCTTGAGGTTGAGTTGGACTCCAGTGCGGCGATTAAAGCGATCACCCGTGCAGAAGAAGATCAATCGGAGCTCTCATTGTTCGTTGAGGGAGTCACTGATCTGATCCCAGCAGCAAACGCCGTCCGGTTTTCTAAATGCTCGAGAGCAGCGAATGTAGGCGCACACAATTTGGTGCGAGCAAGTCTTCAAGTTGGGGATTTTAGTTTTTTTGGGCGTTTCTTGTCCCCTAATTTCGTTCATTCTTTTTTGGAAAGGGAGGTCCGTCTCCCTAACTGGTTTTCTTCTATTTTAGAAGAAATTGATTGTAGTTTGGTTCCTTCTCTCTAA

Coding sequence (CDS)

ATGAGTTTAGGGGATTGCTGGACTCCCCCAGACTATTGGCAAAGGCTTGCTAGCATTCTCAACATCAGAGATCAAAACAAAGCGGCCATTATCATCTGGTGCCTCTGGTTCGAAAGAAATTCAAGCAAGCATAGTGGGAAGATGGCAGATATAGAGAAAATAATCCTATCCATCAGTAAATATTTAGAAGAGTTTGAAAGGAAAGTAGTACCTGCTCGCTCGTCGGATCGATCAGAGAATCAAGCGAGTCATGGCAGTTGGTCCCCGCCGGCATCTGGTTCCTTTAAATTGAACGCCGATGCCTCCTGGTGTGATCGCTCAAATTCAGGAGGGGTGGGGTGCATTCTCCGTGACTCGAATGGTTCTCTCATCTTGGCGGGCTGCAAGCAGATTCCCTATCGATGGGATATTAAAACCCTCGAATCTTATGCCATTCATGAAGGGTTAGAGTCTTACGTGAAGGCTCTGGAAGAACTAGATCTCAGACAAAAGCCCCCCCTTGAGGTTGAGTTGGACTCCAGTGCGGCGATTAAAGCGATCACCCGTGCAGAAGAAGATCAATCGGAGCTCTCATTGTTCGTTGAGGGAGTCACTGATCTGATCCCAGCAGCAAACGCCGTCCGGTTTTCTAAATGCTCGAGAGCAGCGAATGTAGGCGCACACAATTTGGTGCGAGCAAGTCTTCAAGTTGGGGATTTTAGTTTTTTTGGGCGTTTCTTGTCCCCTAATTTCGTTCATTCTTTTTTGGAAAGGGAGGTCCGTCTCCCTAACTGGTTTTCTTCTATTTTAGAAGAAATTGATTGTAGTTTGGTTCCTTCTCTCTAA

Protein sequence

MSLGDCWTPPDYWQRLASILNIRDQNKAAIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQVGDFSFFGRFLSPNFVHSFLEREVRLPNWFSSILEEIDCSLVPSL

Homology

[Close]

BLAST of Lcy01g003700.1 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-17
Identity = 68/220 (30.91%), Postives = 108/220 (49.09%), Query Frame = 0


Query: 24  DQNKAAIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQAS 83
           ++ ++ II W +W  RN S   G  ++   I L I +Y+     +        +S N+  
Sbjct: 8   ERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGR--DTNLKGKSANKDL 67

Query: 84  H----------GSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPY 143
           H            W PP S S+KLN DA+W   +N+GG+G ILRD  G +I A C+ I  
Sbjct: 68  HLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 127

Query: 144 RWDIKTLESYAIHEGL----ESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSE 203
             +I  LE  AI EGL    + + + +++   R   P+ +E DS  AI  + R  +DQ+E
Sbjct: 128 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCR---PIHLESDSLEAIHLLHRQCQDQTE 187

Query: 204 LSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQ 230
           +   +E +  ++     V     SR AN  AH+L R +++
Sbjct: 188 IIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAME 222

[Close]

BLAST of Lcy01g003700.1 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.6e-17
Identity = 68/216 (31.48%), Postives = 106/216 (49.07%), Query Frame = 0


Query: 24  DQNKAAIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQAS 83
           ++ ++ II W +W  RN S   G   +   I L+I +Y+     +    +   +S N+  
Sbjct: 8   ERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKG--KSTNKDL 67

Query: 84  H----------GSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPY 143
           H            W PP S S+KLN +A+W   +N+GG+G ILRD  G +I A C+ I  
Sbjct: 68  HLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 127

Query: 144 RWDIKTLESYAIHEGLESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSELSLF 203
             +I  LE  AI EGL    +A+ +   R   P+ +E DS  AI  + R  +DQ+E+   
Sbjct: 128 ERNITYLEVMAICEGL----RAIRQEHCR---PIHLESDSLEAIHLLHRQCQDQTEIIWL 187

Query: 204 VEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQ 230
           +E +  ++     V     SR AN  AH L R +++
Sbjct: 188 LEEIWQMMKDMEIVSMRHISREANKVAHGLARRAME 214

[Close]

BLAST of Lcy01g003700.1 vs. ExPASy TrEMBL
Match: A0A5P1EPS3 (RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F5270 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-14
Identity = 66/224 (29.46%), Postives = 105/224 (46.88%), Query Frame = 0


Query: 8   TPPDYWQRLASILNIRDQNKA--AIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEF 67
           T P++     ++L  + QN A  A+  W +W  RN      +   + K +      LE++
Sbjct: 25  TAPNFKDWFNAMLQNQQQNLALIAMTCWAIWNNRNEIVWQARSFTVSKALWIACNLLEQW 84

Query: 68  ERK-VVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLI 127
            ++ VVP  ++  +E  A++  WSPPA+G FKLN DA+        G+G I+RD  GS +
Sbjct: 85  RKENVVPPLATGETET-ANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQGSFV 144

Query: 128 LAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPL-EVELDSSAAIKAITRA 187
            A   Q+    D    E+  + E L S++K+         P + E+E+D+     A+ R 
Sbjct: 145 AARATQVHGIIDPALAEALGVREAL-SWLKS-------NFPQVHEIEMDAITVYNALHRD 204

Query: 188 EEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRAS 228
           E D S   L +E    L      +RF    R AN  AH L + +
Sbjct: 205 EPDFSYFGLIIEDCLSLARNIPNIRFLWTRRTANKAAHILAQTA 239

[Close]

BLAST of Lcy01g003700.1 vs. ExPASy TrEMBL
Match: A0A1R3GVP2 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23000 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-14
Identity = 61/202 (30.20%), Postives = 94/202 (46.53%), Query Frame = 0


Query: 30  IIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQASHGSWSP 89
           +++W LW  RN   H    A    +++  ++ + E E+     R  +    Q     WSP
Sbjct: 752 VVLWLLWMNRNKVIHERICALPSVLVIKATRLVHEMEQS--QCRRENNGVLQRMVHVWSP 811

Query: 90  PASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPYRWDIKTLESYAIHEGL 149
           PA   FK+NADA +    N  G+G ++RDS G + L    +I +  D+   E YA+  GL
Sbjct: 812 PARNCFKVNADAVFHASRNEAGLGVVIRDSRGVVFLCATARIDHVRDVLFAEIYALQFGL 871

Query: 150 ESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSELSLFVEGVTDLIPAANAVRF 209
               K+   +D       EVE DSS AI  I + E    E  + V+ +  +    ++ +F
Sbjct: 872 -LVAKSYNLVD------CEVESDSSLAISEINKLEGSLWEGGVLVDQIRHIASLFHSCKF 931

Query: 210 SKCSRAANVGAHNLVRASLQVG 232
           S  +R AN  AH L     +VG
Sbjct: 932 SYVNRVANKFAHELAHLDCEVG 944

[Close]

BLAST of Lcy01g003700.1 vs. ExPASy TrEMBL
Match: A0A5P1FW40 (RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F28990 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-14
Identity = 66/224 (29.46%), Postives = 105/224 (46.88%), Query Frame = 0


Query: 8   TPPDYWQRLASILNIRDQNKA--AIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEF 67
           T P++     ++L  + QN A  A+  W +W  RN      +   + K +      LE++
Sbjct: 25  TAPNFKGWFNAMLQNQQQNLALIAMTCWAIWNNRNEIVWQARSFTVSKALWIACNLLEQW 84

Query: 68  ERK-VVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLI 127
            ++ VVP  ++  +E  A++  WSPPA+G FKLN DA+        G+G I+RD  GS +
Sbjct: 85  RKENVVPPLATSETET-ANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQGSFV 144

Query: 128 LAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPL-EVELDSSAAIKAITRA 187
            A   Q+    D    E+  + E L S++K+         P + E+E+D+     A+ R 
Sbjct: 145 AARATQVHGIIDPALAEALGVREAL-SWLKS-------NFPQVHEIEMDAITVYNALHRD 204

Query: 188 EEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRAS 228
           E D S   L +E    L      +RF    R AN  AH L + +
Sbjct: 205 EPDFSYFGLIIEDCLSLARNIPNIRFLWTRRTANKAAHILAQTA 239

[Close]

BLAST of Lcy01g003700.1 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 6.8e-17
Identity = 68/220 (30.91%), Postives = 108/220 (49.09%), Query Frame = 0


Query: 24  DQNKAAIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQAS 83
           ++ ++ II W +W  RN S   G  ++   I L I +Y+     +        +S N+  
Sbjct: 8   ERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGR--DTNLKGKSANKDL 67

Query: 84  H----------GSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPY 143
           H            W PP S S+KLN DA+W   +N+GG+G ILRD  G +I A C+ I  
Sbjct: 68  HLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 127

Query: 144 RWDIKTLESYAIHEGL----ESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSE 203
             +I  LE  AI EGL    + + + +++   R   P+ +E DS  AI  + R  +DQ+E
Sbjct: 128 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCR---PIHLESDSLEAIHLLHRQCQDQTE 187

Query: 204 LSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQ 230
           +   +E +  ++     V     SR AN  AH+L R +++
Sbjct: 188 IIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAME 222

[Close]

BLAST of Lcy01g003700.1 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-16
Identity = 68/216 (31.48%), Postives = 106/216 (49.07%), Query Frame = 0


Query: 24  DQNKAAIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQAS 83
           ++ ++ II W +W  RN S   G   +   I L+I +Y+     +    +   +S N+  
Sbjct: 8   ERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKG--KSTNKDL 67

Query: 84  H----------GSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPY 143
           H            W PP S S+KLN +A+W   +N+GG+G ILRD  G +I A C+ I  
Sbjct: 68  HLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 127

Query: 144 RWDIKTLESYAIHEGLESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSELSLF 203
             +I  LE  AI EGL    +A+ +   R   P+ +E DS  AI  + R  +DQ+E+   
Sbjct: 128 ERNITYLEVMAICEGL----RAIRQEHCR---PIHLESDSLEAIHLLHRQCQDQTEIIWL 187

Query: 204 VEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQ 230
           +E +  ++     V     SR AN  AH L R +++
Sbjct: 188 LEEIWQMMKDMEIVSMRHISREANKVAHGLARRAME 214

[Close]

BLAST of Lcy01g003700.1 vs. NCBI nr
Match: XP_023880912.1 (uncharacterized protein LOC111993298 [Quercus suber])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-15
Identity = 65/240 (27.08%), Postives = 102/240 (42.50%), Query Frame = 0


Query: 2    SLGDCWTPPDYW--------QRLASILNIRDQNK-----AAIIIWCLWFERNSSKHSGKM 61
            SL + W P   W        Q +  ++N+  Q         ++ WC+W  RN  + + K 
Sbjct: 908  SLKEIWNPCFSWVRTEVPYLQDMLELINLVGQRANGLELFGVVAWCIWTYRNKLRLNEKG 967

Query: 62   ADIEKIILSISKYLEEFERKVVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSN 121
               +K+  +   YL +F+ K    R   R EN      W PP  G FK N D +    S 
Sbjct: 968  VPSDKLFETARSYLLDFQSKFQVTRGQQRKENT----KWLPPGDGLFKANYDGAVFAESE 1027

Query: 122  SGGVGCILRDSNGSLILAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPLE 181
              G+G I+RDS G ++ A  ++IPY   ++ LE+ A         K + EL L      E
Sbjct: 1028 EAGIGVIVRDSKGDVLAALAEKIPYLGSVEVLEALAARRA----AKFVVELGL---TAAE 1087

Query: 182  VELDSSAAIKAITRAEEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASL 229
             E DS     A+  A E  S + + ++    ++ +     FS   R  N  AH L + ++
Sbjct: 1088 FEGDSEVVWTALKVANEAHSAMGVIIKDTLSIVGSLRTFSFSHTRRQGNCVAHALAKRAI 1136

[Close]

BLAST of Lcy01g003700.1 vs. NCBI nr
Match: ONK67926.1 (uncharacterized protein A4U43_C05F5270 [Asparagus officinalis])

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-14
Identity = 66/224 (29.46%), Postives = 105/224 (46.88%), Query Frame = 0


Query: 8   TPPDYWQRLASILNIRDQNKA--AIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEF 67
           T P++     ++L  + QN A  A+  W +W  RN      +   + K +      LE++
Sbjct: 25  TAPNFKDWFNAMLQNQQQNLALIAMTCWAIWNNRNEIVWQARSFTVSKALWIACNLLEQW 84

Query: 68  ERK-VVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLI 127
            ++ VVP  ++  +E  A++  WSPPA+G FKLN DA+        G+G I+RD  GS +
Sbjct: 85  RKENVVPPLATGETET-ANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQGSFV 144

Query: 128 LAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPL-EVELDSSAAIKAITRA 187
            A   Q+    D    E+  + E L S++K+         P + E+E+D+     A+ R 
Sbjct: 145 AARATQVHGIIDPALAEALGVREAL-SWLKS-------NFPQVHEIEMDAITVYNALHRD 204

Query: 188 EEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRAS 228
           E D S   L +E    L      +RF    R AN  AH L + +
Sbjct: 205 EPDFSYFGLIIEDCLSLARNIPNIRFLWTRRTANKAAHILAQTA 239

[Close]

BLAST of Lcy01g003700.1 vs. NCBI nr
Match: ONK81429.1 (uncharacterized protein A4U43_C01F28990 [Asparagus officinalis])

HSP 1 Score: 89.0 bits (219), Expect = 7.0e-14
Identity = 66/224 (29.46%), Postives = 105/224 (46.88%), Query Frame = 0


Query: 8   TPPDYWQRLASILNIRDQNKA--AIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEF 67
           T P++     ++L  + QN A  A+  W +W  RN      +   + K +      LE++
Sbjct: 25  TAPNFKGWFNAMLQNQQQNLALIAMTCWAIWNNRNEIVWQARSFTVSKALWIACNLLEQW 84

Query: 68  ERK-VVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLI 127
            ++ VVP  ++  +E  A++  WSPPA+G FKLN DA+        G+G I+RD  GS +
Sbjct: 85  RKENVVPPLATSETET-ANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQGSFV 144

Query: 128 LAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPL-EVELDSSAAIKAITRA 187
            A   Q+    D    E+  + E L S++K+         P + E+E+D+     A+ R 
Sbjct: 145 AARATQVHGIIDPALAEALGVREAL-SWLKS-------NFPQVHEIEMDAITVYNALHRD 204

Query: 188 EEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRAS 228
           E D S   L +E    L      +RF    R AN  AH L + +
Sbjct: 205 EPDFSYFGLIIEDCLSLARNIPNIRFLWTRRTANKAAHILAQTA 239

[Close]

BLAST of Lcy01g003700.1 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.9e-04
Identity = 42/179 (23.46%), Postives = 77/179 (43.02%), Query Frame = 0


Query: 73  RSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIP 132
           ++ +R+ + + +  WSPP     K N DAS  +R+   G+G ILR+S G++I  G  +  
Sbjct: 91  QNGNRNADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQ 150

Query: 133 YRWDIKTLESYAIHEGLES-----YVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQ 192
            R   +  E   +   +++     + K + E D             +  I  +   +   
Sbjct: 151 GRMTTEEAECSTLIWAIQASYGFGHKKVIFEGD-------------NQTITRMINTKSSN 210

Query: 193 SELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQVG-DFSFFGR---FLSP 243
             L  F++ +   IP+  ++ FS   R  N  A  L + +++    +S F     FLSP
Sbjct: 211 PRLQHFLDTIQSWIPSFESIEFSFKHREQNGCADFLAKQAIKENTQWSLFHSCPYFLSP 256

The following BLAST results are available for this feature:

BLAST of Lcy01g003700.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g003700.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSV1	3.3e-17	30.91	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	5.6e-17	31.48	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5P1EPS3	2.6e-14	29.46	RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F...	[more]
A0A1R3GVP2	3.4e-14	30.20	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23000 PE=4 SV...	[more]
A0A5P1FW40	3.4e-14	29.46	RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F...	[more]

BLAST of Lcy01g003700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156777.1	6.8e-17	30.91	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	1.2e-16	31.48	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_023880912.1	1.3e-15	27.08	uncharacterized protein LOC111993298 [Quercus suber]	[more]
ONK67926.1	5.4e-14	29.46	uncharacterized protein A4U43_C05F5270 [Asparagus officinalis]	[more]
ONK81429.1	7.0e-14	29.46	uncharacterized protein A4U43_C01F28990 [Asparagus officinalis]	[more]

BLAST of Lcy01g003700.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65005.1	1.9e-04	23.46	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 98..225 e-value: 9.8E-14 score: 51.2
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 94..231 e-value: 8.2E-9 score: 37.5
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 74..249
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 97..225 e-value: 2.50632E-10 score: 55.0128
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 95..228

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy01g003700	Lcy01g003700	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy01g003700.1.exon1	Lcy01g003700.1.exon1	exon
Lcy01g003700.1.exon2	Lcy01g003700.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy01g003700.1.cds1	Lcy01g003700.1.cds1	CDS
Lcy01g003700.1.cds2	Lcy01g003700.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy01g003700.1	Lcy01g003700.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity