Lcy01g003700 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g003700
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr01: 4468961 .. 4471003 (+)
RNA-Seq ExpressionLcy01g003700
SyntenyLcy01g003700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTAGGGTTTTGAATGTCTGAAAATTTGGGGGAAATCTCTTAATTTTGGGACATTTGGATCTTGAAAGCCCAGCCCATCATGGAGTGAAATAGAAGCCCAATTACTCTAAGGTTGCCAGTCCCATTAACCCAATGGCTCAATAAGAGAAAAACAAAAAAGATTCTATATATATATATATATTTTTTTGAGTACATCAACATTCAGGGGTGGGGGGATTCGAACCTTTGACCTCATGGTCGAGGGTACATGCCAATTACGAGCTAAGCTCACTTTGGCCAAAAAAGATTCTATATTTTTCAATATTAACTTTGCCAACATGAGTTTAATTCAACTAGCATAAAGTTGTACTGATGACCAAGAGATTTGTGGTTTTGATTGTTTGCATGACATCGTGGCAACGATGAAGCTCGATATAGATAGAGCATGTGATCGTGTTGAATGGATTTATTTACATCGAGTTATTTGGAGTCAATCCGTTTATTTATTTCTTATTTTATTTGTATACTTTTGAATGAAAAGCCACAACAAGAATTTGCTCTGTTATGTAGACTTCATTAGGGAGATCTCATTTCCATTTTCCCCTATCTTTTTCTAATTTGTGCTAAAGGGTTGTATGCACTTTTATACATGGAAGAAGAACTACTTAAATTTTCTGGATTAAAGATTAATAATATTGCGTAGTTGTGAACCATCTTTTCAAGGCACATGTTCTTCAAAGAAACGCTTAAGGATAGTCAAATGATTAAGCAAACTCTCTCTACTTGTGAAAAGGCGTTTCGAGAAATGATCAATTATGCCAAGTTAATGTTTATGGTTAGCAAGAATACATATCCAAACATGATGGAGATTAATAAAAGGAAATTACATATGGGATAAGAAAAACGACATTTTTACGGTGAAGAACGCCTATCACTTGGCTACCAACCTAGCCCAAGCGGAGGTTCCTTCAAGCTCGGACGATTCCCATGCCAAATCCCTATGGAAGTCCATCTGGAATCTCAATTGCCTCCCTAGAGCTAAAATCATGGTTTGGAAAGTGGTTAAGGATATTCTTCCTACCCAATTGAATATTATCAAAATAGAGGCGTAAATACTAACTCTCTGTGTCTTCTTTACAGGACAAAAAGGGAGTCGACAGGGCATATTTTCTGGTCTTGTAAGGTGGCTAGGAAGGTTTGGGTTTTTTTCTTCCCGGTCTTAAAAAGTTTTCTTAATTCTGTTAGGGATTGCTGGACTCCCCCAGACTATTGGCAAAGGCTTGCTAGCATTCTCAACATCAGAGATCAAAACAAAGCGGCCATTATCATCTGGTGCCTCTGGTTCGAAAGAAATTCAAGCAAGCATAGTGGGAAGATGGCAGATATAGAGAAAATAATCCTATCCATCAGTAAATATTTAGAAGAGTTTGAAAGGAAAGTAGTACCTGCTCGCTCGTCGGATCGATCAGAGAATCAAGCGAGTCATGGCAGTTGGTCCCCGCCGGCATCTGGTTCCTTTAAATTGAACGCCGATGCCTCCTGGTGTGATCGCTCAAATTCAGGAGGGGTGGGGTGCATTCTCCGTGACTCGAATGGTTCTCTCATCTTGGCGGGCTGCAAGCAGATTCCCTATCGATGGGATATTAAAACCCTCGAATCTTATGCCATTCATGAAGGGTTAGAGTCTTACGTGAAGGCTCTGGAAGAACTAGATCTCAGACAAAAGCCCCCCCTTGAGGTTGAGTTGGACTCCAGTGCGGCGATTAAAGCGATCACCCGTGCAGAAGAAGATCAATCGGAGCTCTCATTGTTCGTTGAGGGAGTCACTGATCTGATCCCAGCAGCAAACGCCGTCCGGTTTTCTAAATGCTCGAGAGCAGCGAATGTAGGCGCACACAATTTGGTGCGAGCAAGTCTTCAAGTTGGGGATTTTAGTTTTTTTGGGCGTTTCTTGTCCCCTAATTTCGTTCATTCTTTTTTGGAAAGGGAGGTCCGTCTCCCTAACTGGTTTTCTTCTATTTTAGAAGAAATTGATTGTAGTTTGGTTCCTTCTCTCTAA

mRNA sequence

ATGAGTTTAGGGGATTGCTGGACTCCCCCAGACTATTGGCAAAGGCTTGCTAGCATTCTCAACATCAGAGATCAAAACAAAGCGGCCATTATCATCTGGTGCCTCTGGTTCGAAAGAAATTCAAGCAAGCATAGTGGGAAGATGGCAGATATAGAGAAAATAATCCTATCCATCAGTAAATATTTAGAAGAGTTTGAAAGGAAAGTAGTACCTGCTCGCTCGTCGGATCGATCAGAGAATCAAGCGAGTCATGGCAGTTGGTCCCCGCCGGCATCTGGTTCCTTTAAATTGAACGCCGATGCCTCCTGGTGTGATCGCTCAAATTCAGGAGGGGTGGGGTGCATTCTCCGTGACTCGAATGGTTCTCTCATCTTGGCGGGCTGCAAGCAGATTCCCTATCGATGGGATATTAAAACCCTCGAATCTTATGCCATTCATGAAGGGTTAGAGTCTTACGTGAAGGCTCTGGAAGAACTAGATCTCAGACAAAAGCCCCCCCTTGAGGTTGAGTTGGACTCCAGTGCGGCGATTAAAGCGATCACCCGTGCAGAAGAAGATCAATCGGAGCTCTCATTGTTCGTTGAGGGAGTCACTGATCTGATCCCAGCAGCAAACGCCGTCCGGTTTTCTAAATGCTCGAGAGCAGCGAATGTAGGCGCACACAATTTGGTGCGAGCAAGTCTTCAAGTTGGGGATTTTAGTTTTTTTGGGCGTTTCTTGTCCCCTAATTTCGTTCATTCTTTTTTGGAAAGGGAGGTCCGTCTCCCTAACTGGTTTTCTTCTATTTTAGAAGAAATTGATTGTAGTTTGGTTCCTTCTCTCTAA

Coding sequence (CDS)

ATGAGTTTAGGGGATTGCTGGACTCCCCCAGACTATTGGCAAAGGCTTGCTAGCATTCTCAACATCAGAGATCAAAACAAAGCGGCCATTATCATCTGGTGCCTCTGGTTCGAAAGAAATTCAAGCAAGCATAGTGGGAAGATGGCAGATATAGAGAAAATAATCCTATCCATCAGTAAATATTTAGAAGAGTTTGAAAGGAAAGTAGTACCTGCTCGCTCGTCGGATCGATCAGAGAATCAAGCGAGTCATGGCAGTTGGTCCCCGCCGGCATCTGGTTCCTTTAAATTGAACGCCGATGCCTCCTGGTGTGATCGCTCAAATTCAGGAGGGGTGGGGTGCATTCTCCGTGACTCGAATGGTTCTCTCATCTTGGCGGGCTGCAAGCAGATTCCCTATCGATGGGATATTAAAACCCTCGAATCTTATGCCATTCATGAAGGGTTAGAGTCTTACGTGAAGGCTCTGGAAGAACTAGATCTCAGACAAAAGCCCCCCCTTGAGGTTGAGTTGGACTCCAGTGCGGCGATTAAAGCGATCACCCGTGCAGAAGAAGATCAATCGGAGCTCTCATTGTTCGTTGAGGGAGTCACTGATCTGATCCCAGCAGCAAACGCCGTCCGGTTTTCTAAATGCTCGAGAGCAGCGAATGTAGGCGCACACAATTTGGTGCGAGCAAGTCTTCAAGTTGGGGATTTTAGTTTTTTTGGGCGTTTCTTGTCCCCTAATTTCGTTCATTCTTTTTTGGAAAGGGAGGTCCGTCTCCCTAACTGGTTTTCTTCTATTTTAGAAGAAATTGATTGTAGTTTGGTTCCTTCTCTCTAA

Protein sequence

MSLGDCWTPPDYWQRLASILNIRDQNKAAIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQVGDFSFFGRFLSPNFVHSFLEREVRLPNWFSSILEEIDCSLVPSL
Homology
BLAST of Lcy01g003700 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-17
Identity = 68/220 (30.91%), Postives = 108/220 (49.09%), Query Frame = 0

Query: 24  DQNKAAIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQAS 83
           ++ ++ II W +W  RN S   G  ++   I L I +Y+     +        +S N+  
Sbjct: 8   ERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGR--DTNLKGKSANKDL 67

Query: 84  H----------GSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPY 143
           H            W PP S S+KLN DA+W   +N+GG+G ILRD  G +I A C+ I  
Sbjct: 68  HLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 127

Query: 144 RWDIKTLESYAIHEGL----ESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSE 203
             +I  LE  AI EGL    + + + +++   R   P+ +E DS  AI  + R  +DQ+E
Sbjct: 128 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCR---PIHLESDSLEAIHLLHRQCQDQTE 187

Query: 204 LSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQ 230
           +   +E +  ++     V     SR AN  AH+L R +++
Sbjct: 188 IIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAME 222

BLAST of Lcy01g003700 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.6e-17
Identity = 68/216 (31.48%), Postives = 106/216 (49.07%), Query Frame = 0

Query: 24  DQNKAAIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQAS 83
           ++ ++ II W +W  RN S   G   +   I L+I +Y+     +    +   +S N+  
Sbjct: 8   ERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKG--KSTNKDL 67

Query: 84  H----------GSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPY 143
           H            W PP S S+KLN +A+W   +N+GG+G ILRD  G +I A C+ I  
Sbjct: 68  HLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 127

Query: 144 RWDIKTLESYAIHEGLESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSELSLF 203
             +I  LE  AI EGL    +A+ +   R   P+ +E DS  AI  + R  +DQ+E+   
Sbjct: 128 ERNITYLEVMAICEGL----RAIRQEHCR---PIHLESDSLEAIHLLHRQCQDQTEIIWL 187

Query: 204 VEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQ 230
           +E +  ++     V     SR AN  AH L R +++
Sbjct: 188 LEEIWQMMKDMEIVSMRHISREANKVAHGLARRAME 214

BLAST of Lcy01g003700 vs. ExPASy TrEMBL
Match: A0A5P1EPS3 (RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F5270 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-14
Identity = 66/224 (29.46%), Postives = 105/224 (46.88%), Query Frame = 0

Query: 8   TPPDYWQRLASILNIRDQNKA--AIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEF 67
           T P++     ++L  + QN A  A+  W +W  RN      +   + K +      LE++
Sbjct: 25  TAPNFKDWFNAMLQNQQQNLALIAMTCWAIWNNRNEIVWQARSFTVSKALWIACNLLEQW 84

Query: 68  ERK-VVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLI 127
            ++ VVP  ++  +E  A++  WSPPA+G FKLN DA+        G+G I+RD  GS +
Sbjct: 85  RKENVVPPLATGETET-ANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQGSFV 144

Query: 128 LAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPL-EVELDSSAAIKAITRA 187
            A   Q+    D    E+  + E L S++K+         P + E+E+D+     A+ R 
Sbjct: 145 AARATQVHGIIDPALAEALGVREAL-SWLKS-------NFPQVHEIEMDAITVYNALHRD 204

Query: 188 EEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRAS 228
           E D S   L +E    L      +RF    R AN  AH L + +
Sbjct: 205 EPDFSYFGLIIEDCLSLARNIPNIRFLWTRRTANKAAHILAQTA 239

BLAST of Lcy01g003700 vs. ExPASy TrEMBL
Match: A0A1R3GVP2 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23000 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-14
Identity = 61/202 (30.20%), Postives = 94/202 (46.53%), Query Frame = 0

Query: 30  IIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQASHGSWSP 89
           +++W LW  RN   H    A    +++  ++ + E E+     R  +    Q     WSP
Sbjct: 752 VVLWLLWMNRNKVIHERICALPSVLVIKATRLVHEMEQS--QCRRENNGVLQRMVHVWSP 811

Query: 90  PASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPYRWDIKTLESYAIHEGL 149
           PA   FK+NADA +    N  G+G ++RDS G + L    +I +  D+   E YA+  GL
Sbjct: 812 PARNCFKVNADAVFHASRNEAGLGVVIRDSRGVVFLCATARIDHVRDVLFAEIYALQFGL 871

Query: 150 ESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSELSLFVEGVTDLIPAANAVRF 209
               K+   +D       EVE DSS AI  I + E    E  + V+ +  +    ++ +F
Sbjct: 872 -LVAKSYNLVD------CEVESDSSLAISEINKLEGSLWEGGVLVDQIRHIASLFHSCKF 931

Query: 210 SKCSRAANVGAHNLVRASLQVG 232
           S  +R AN  AH L     +VG
Sbjct: 932 SYVNRVANKFAHELAHLDCEVG 944

BLAST of Lcy01g003700 vs. ExPASy TrEMBL
Match: A0A5P1FW40 (RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F28990 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-14
Identity = 66/224 (29.46%), Postives = 105/224 (46.88%), Query Frame = 0

Query: 8   TPPDYWQRLASILNIRDQNKA--AIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEF 67
           T P++     ++L  + QN A  A+  W +W  RN      +   + K +      LE++
Sbjct: 25  TAPNFKGWFNAMLQNQQQNLALIAMTCWAIWNNRNEIVWQARSFTVSKALWIACNLLEQW 84

Query: 68  ERK-VVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLI 127
            ++ VVP  ++  +E  A++  WSPPA+G FKLN DA+        G+G I+RD  GS +
Sbjct: 85  RKENVVPPLATSETET-ANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQGSFV 144

Query: 128 LAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPL-EVELDSSAAIKAITRA 187
            A   Q+    D    E+  + E L S++K+         P + E+E+D+     A+ R 
Sbjct: 145 AARATQVHGIIDPALAEALGVREAL-SWLKS-------NFPQVHEIEMDAITVYNALHRD 204

Query: 188 EEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRAS 228
           E D S   L +E    L      +RF    R AN  AH L + +
Sbjct: 205 EPDFSYFGLIIEDCLSLARNIPNIRFLWTRRTANKAAHILAQTA 239

BLAST of Lcy01g003700 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 6.8e-17
Identity = 68/220 (30.91%), Postives = 108/220 (49.09%), Query Frame = 0

Query: 24  DQNKAAIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQAS 83
           ++ ++ II W +W  RN S   G  ++   I L I +Y+     +        +S N+  
Sbjct: 8   ERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGR--DTNLKGKSANKDL 67

Query: 84  H----------GSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPY 143
           H            W PP S S+KLN DA+W   +N+GG+G ILRD  G +I A C+ I  
Sbjct: 68  HLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 127

Query: 144 RWDIKTLESYAIHEGL----ESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSE 203
             +I  LE  AI EGL    + + + +++   R   P+ +E DS  AI  + R  +DQ+E
Sbjct: 128 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCR---PIHLESDSLEAIHLLHRQCQDQTE 187

Query: 204 LSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQ 230
           +   +E +  ++     V     SR AN  AH+L R +++
Sbjct: 188 IIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAME 222

BLAST of Lcy01g003700 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-16
Identity = 68/216 (31.48%), Postives = 106/216 (49.07%), Query Frame = 0

Query: 24  DQNKAAIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEFERKVVPARSSDRSENQAS 83
           ++ ++ II W +W  RN S   G   +   I L+I +Y+     +    +   +S N+  
Sbjct: 8   ERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKG--KSTNKDL 67

Query: 84  H----------GSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIPY 143
           H            W PP S S+KLN +A+W   +N+GG+G ILRD  G +I A C+ I  
Sbjct: 68  HLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 127

Query: 144 RWDIKTLESYAIHEGLESYVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQSELSLF 203
             +I  LE  AI EGL    +A+ +   R   P+ +E DS  AI  + R  +DQ+E+   
Sbjct: 128 ERNITYLEVMAICEGL----RAIRQEHCR---PIHLESDSLEAIHLLHRQCQDQTEIIWL 187

Query: 204 VEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQ 230
           +E +  ++     V     SR AN  AH L R +++
Sbjct: 188 LEEIWQMMKDMEIVSMRHISREANKVAHGLARRAME 214

BLAST of Lcy01g003700 vs. NCBI nr
Match: XP_023880912.1 (uncharacterized protein LOC111993298 [Quercus suber])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-15
Identity = 65/240 (27.08%), Postives = 102/240 (42.50%), Query Frame = 0

Query: 2    SLGDCWTPPDYW--------QRLASILNIRDQNK-----AAIIIWCLWFERNSSKHSGKM 61
            SL + W P   W        Q +  ++N+  Q         ++ WC+W  RN  + + K 
Sbjct: 908  SLKEIWNPCFSWVRTEVPYLQDMLELINLVGQRANGLELFGVVAWCIWTYRNKLRLNEKG 967

Query: 62   ADIEKIILSISKYLEEFERKVVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSN 121
               +K+  +   YL +F+ K    R   R EN      W PP  G FK N D +    S 
Sbjct: 968  VPSDKLFETARSYLLDFQSKFQVTRGQQRKENT----KWLPPGDGLFKANYDGAVFAESE 1027

Query: 122  SGGVGCILRDSNGSLILAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPLE 181
              G+G I+RDS G ++ A  ++IPY   ++ LE+ A         K + EL L      E
Sbjct: 1028 EAGIGVIVRDSKGDVLAALAEKIPYLGSVEVLEALAARRA----AKFVVELGL---TAAE 1087

Query: 182  VELDSSAAIKAITRAEEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASL 229
             E DS     A+  A E  S + + ++    ++ +     FS   R  N  AH L + ++
Sbjct: 1088 FEGDSEVVWTALKVANEAHSAMGVIIKDTLSIVGSLRTFSFSHTRRQGNCVAHALAKRAI 1136

BLAST of Lcy01g003700 vs. NCBI nr
Match: ONK67926.1 (uncharacterized protein A4U43_C05F5270 [Asparagus officinalis])

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-14
Identity = 66/224 (29.46%), Postives = 105/224 (46.88%), Query Frame = 0

Query: 8   TPPDYWQRLASILNIRDQNKA--AIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEF 67
           T P++     ++L  + QN A  A+  W +W  RN      +   + K +      LE++
Sbjct: 25  TAPNFKDWFNAMLQNQQQNLALIAMTCWAIWNNRNEIVWQARSFTVSKALWIACNLLEQW 84

Query: 68  ERK-VVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLI 127
            ++ VVP  ++  +E  A++  WSPPA+G FKLN DA+        G+G I+RD  GS +
Sbjct: 85  RKENVVPPLATGETET-ANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQGSFV 144

Query: 128 LAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPL-EVELDSSAAIKAITRA 187
            A   Q+    D    E+  + E L S++K+         P + E+E+D+     A+ R 
Sbjct: 145 AARATQVHGIIDPALAEALGVREAL-SWLKS-------NFPQVHEIEMDAITVYNALHRD 204

Query: 188 EEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRAS 228
           E D S   L +E    L      +RF    R AN  AH L + +
Sbjct: 205 EPDFSYFGLIIEDCLSLARNIPNIRFLWTRRTANKAAHILAQTA 239

BLAST of Lcy01g003700 vs. NCBI nr
Match: ONK81429.1 (uncharacterized protein A4U43_C01F28990 [Asparagus officinalis])

HSP 1 Score: 89.0 bits (219), Expect = 7.0e-14
Identity = 66/224 (29.46%), Postives = 105/224 (46.88%), Query Frame = 0

Query: 8   TPPDYWQRLASILNIRDQNKA--AIIIWCLWFERNSSKHSGKMADIEKIILSISKYLEEF 67
           T P++     ++L  + QN A  A+  W +W  RN      +   + K +      LE++
Sbjct: 25  TAPNFKGWFNAMLQNQQQNLALIAMTCWAIWNNRNEIVWQARSFTVSKALWIACNLLEQW 84

Query: 68  ERK-VVPARSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLI 127
            ++ VVP  ++  +E  A++  WSPPA+G FKLN DA+        G+G I+RD  GS +
Sbjct: 85  RKENVVPPLATSETET-ANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQGSFV 144

Query: 128 LAGCKQIPYRWDIKTLESYAIHEGLESYVKALEELDLRQKPPL-EVELDSSAAIKAITRA 187
            A   Q+    D    E+  + E L S++K+         P + E+E+D+     A+ R 
Sbjct: 145 AARATQVHGIIDPALAEALGVREAL-SWLKS-------NFPQVHEIEMDAITVYNALHRD 204

Query: 188 EEDQSELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRAS 228
           E D S   L +E    L      +RF    R AN  AH L + +
Sbjct: 205 EPDFSYFGLIIEDCLSLARNIPNIRFLWTRRTANKAAHILAQTA 239

BLAST of Lcy01g003700 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.9e-04
Identity = 42/179 (23.46%), Postives = 77/179 (43.02%), Query Frame = 0

Query: 73  RSSDRSENQASHGSWSPPASGSFKLNADASWCDRSNSGGVGCILRDSNGSLILAGCKQIP 132
           ++ +R+ + + +  WSPP     K N DAS  +R+   G+G ILR+S G++I  G  +  
Sbjct: 91  QNGNRNADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQ 150

Query: 133 YRWDIKTLESYAIHEGLES-----YVKALEELDLRQKPPLEVELDSSAAIKAITRAEEDQ 192
            R   +  E   +   +++     + K + E D             +  I  +   +   
Sbjct: 151 GRMTTEEAECSTLIWAIQASYGFGHKKVIFEGD-------------NQTITRMINTKSSN 210

Query: 193 SELSLFVEGVTDLIPAANAVRFSKCSRAANVGAHNLVRASLQVG-DFSFFGR---FLSP 243
             L  F++ +   IP+  ++ FS   R  N  A  L + +++    +S F     FLSP
Sbjct: 211 PRLQHFLDTIQSWIPSFESIEFSFKHREQNGCADFLAKQAIKENTQWSLFHSCPYFLSP 256

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DSV13.3e-1730.91uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CP265.6e-1731.48uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A5P1EPS32.6e-1429.46RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F... [more]
A0A1R3GVP23.4e-1430.20Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23000 PE=4 SV... [more]
A0A5P1FW403.4e-1429.46RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F... [more]
Match NameE-valueIdentityDescription
XP_022156777.16.8e-1730.91uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022143535.11.2e-1631.48uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_023880912.11.3e-1527.08uncharacterized protein LOC111993298 [Quercus suber][more]
ONK67926.15.4e-1429.46uncharacterized protein A4U43_C05F5270 [Asparagus officinalis][more]
ONK81429.17.0e-1429.46uncharacterized protein A4U43_C01F28990 [Asparagus officinalis][more]
Match NameE-valueIdentityDescription
AT5G65005.11.9e-0423.46Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 98..225
e-value: 9.8E-14
score: 51.2
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 94..231
e-value: 8.2E-9
score: 37.5
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 74..249
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 97..225
e-value: 2.50632E-10
score: 55.0128
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 95..228

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g003700.1Lcy01g003700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity