Lag0041138.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0041138.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description40S ribosomal protein S23
Locationchr13: 12662116 .. 12664325 (+)
Sequence length312
RNA-Seq ExpressionLag0041138.1
SyntenyLag0041138.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACAATGGGAGACTTGTTGAGGTATAGATTGGTATATAAATCTTCCTTATACTGTTTTATTGATATAATGATGATTAAATCTCAACATGATTGCATTTGTGTTGTGCTTTTTGAGGATACTAACCCAAAACTTAATTAACAAATAATGTTCTGGTGCATTGTGCAGTGGTATTGAGGCTAAGCAACCTAGCTCTACTATTTGGAAGCATGCTAGAGTTCAACTTATTAAGAACGGGAAGAAGATTGCTGCCTTAGTCTCCAATGATGGTTGTTTGAACTACATTGAAGAGAATGTTAGTATACTTGAGGGTAGTCTGGGATTTTGGTTACTATTACCTCTATTTACTTGTTCTATTTTTGCTATAATATGTATTGTCATGAACAGGAGGAGATGATCATTGCTAGATTTGGTAGAAAAAGACATGTTAGTCGGAGATATTCTTGGAGTTAGATTAAAGGTGGTGAACGTGTCAGGTGTATCTTTACGTATCTCTACTGGCTCTCTTCAAGGAAAAGGAGAAGTCAAGGTCATAAGCTTCTTGGTTTTCCAAGATAGATTTTGTTTCTATTTTCTTCAATTCGTTCAAGAGACAATTAATGAGCAATTGTGATGTTTTCCTCTGTCACTAGTTGAGTTAGATTACTCGGTCCATTCTCTTTTTCTTCCATTTATCCAAACTAATCTTTATATTTCCAATGAGTTTAATTGAGTCATTATTGGTTTTGTTTTTCTATATAGTTTAATAGGTTCTTTAACTATCAATTTTGCATTAAATAGTTTGGTGAGTTTATGGCATATGGAGTGAGTTAGCAAATTTGTCTTTGCTTTTAAGTAGTTTTGGTGAGTTTGTGAGTTTTGGAGTGTGTTTTAGTTAGTTTATGAGGTCATTTTAAGCTAGTTTTGGTATGAAAGAGGACTTAGGTACCTTTATGACACTTATGTTTTTTTGAGGGGTGGGTTAAGTGCACAAGGCTTGCTTAGGCACGTTGAAGTTCATTTTAGAAAGAGTATGATTTTATTCTTGCCACTCTTAGACAACCAAAACAAAGGACAAGAAGCACAATGTTAGTCTTCCATAGTGAACAAATCAAAAGCCAAAGCTAAAAGACAAGAACCATCCAATGACTACTAAAACACAACGCATGAAGGTAAGAAGAAACTTAAAGCTAAGGGACTTCCATGCTCATCTGATGAAGCAAATGATTTATGTGCTTGTCTTTCGTCACTCTCTAAATTAAAAGCCTTTTTGCTCATATCTTATCTTTTTTCTAATGGTCTTTGAATCAATCTTGAAGAGTTAAAACTGTGTGAACTGGGGAGAATTTCCAAATTAAGATCAACTTTTTGATAGTGGTAAAGAATATGCACAGAGGTTTTGAGGTTACTTTGTATTTGGCTATGCATCTTGATTTGTAAGTTATCTCATGATTTATTCTTTTTTCTTAAACGATGTTGAAGCTACATGTAGTAATATTGTGAAGGCTTTTGTTGTTTTGATTCATTGTAATTTGGCAATGACCTTTCATGCTTCAAATATTATATTTTCAGATCATTCTAATTTGTAAATTTGGAGGGCTTAGGTTTTGAGGTTACTTTGTATTTGGTTTGCTTATCATTCTTTTCTTCGTTTAATTGTCGCGGTTGTGATTTTCCTCATTCTTGAGATGACAAATTAATTACATTGCTGCAGTGTTACAAGTTTAATAACCTTGTCGACAACATGCACTTGATCTAATTTTTACAGAGGATGGAGACAACCATCTCACTGCTAAGATGTACCTAAATATGGGTGGAAATATGGATGAAGTTGAATGGTTTCCTTCCCTTATATTCCAGGTACTTCATATGATCCTTCTTTTGTGTCTGGATTCTTCTATATTATGTTAGTTAATTTAGTTCCATGTTATTTACATACTATGTACCGTTATTTCTGGTCTTATTGTGTCACTTGTGCATATAGGTGCATGGAAAAGCTAGATTGACCTTTTCTATGAAAATTAAAATACCATATGCCAAGTATCAATTTAACCAATTAAATAGAAGTTTGTATATCCTCCAAATTCACTTTAAAAAACTTGTGACACTGCAACCATTGCTTGAATTATGGTAAGATTCTCAAAATTTCATGTTTTATTGATCTTGGGAGATTACAGATTAATTACATTGATTTAGAGACTGTCTCACCCAGTACTTATCCATCATAG

mRNA sequence

ATGTCTACAATGGGAGACTTGTTGAGTGGTATTGAGGCTAAGCAACCTAGCTCTACTATTTGGAAGCATGCTAGAGTTCAACTTATTAAGAACGGGAAGAAGATTGCTGCCTTAGTCTCCAATGATGGTTGTTTGAACTACATTGAAGAGAATGTTAGTATACTTGAGGAGGATGGAGACAACCATCTCACTGCTAAGATGTACCTAAATATGGGTGGAAATATGGATGAAGTTGAATGGTTTCCTTCCCTTATATTCCAGATTAATTACATTGATTTAGAGACTGTCTCACCCAGTACTTATCCATCATAG

Coding sequence (CDS)

ATGTCTACAATGGGAGACTTGTTGAGTGGTATTGAGGCTAAGCAACCTAGCTCTACTATTTGGAAGCATGCTAGAGTTCAACTTATTAAGAACGGGAAGAAGATTGCTGCCTTAGTCTCCAATGATGGTTGTTTGAACTACATTGAAGAGAATGTTAGTATACTTGAGGAGGATGGAGACAACCATCTCACTGCTAAGATGTACCTAAATATGGGTGGAAATATGGATGAAGTTGAATGGTTTCCTTCCCTTATATTCCAGATTAATTACATTGATTTAGAGACTGTCTCACCCAGTACTTATCCATCATAG

Protein sequence

MSTMGDLLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSILEEDGDNHLTAKMYLNMGGNMDEVEWFPSLIFQINYIDLETVSPSTYPS
Homology
[Close]
BLAST of Lag0041138.1 vs. NCBI nr
Match: VDD34784.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-11
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 10  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSILEE 58
           GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN S+++E
Sbjct: 77  GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENASLIDE 124

[Close]
BLAST of Lag0041138.1 vs. NCBI nr
Match: TQE03805.1 (hypothetical protein C1H46_010612, partial [Malus baccata])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-11
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 6   DLLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL 56
           DL SGIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Sbjct: 620 DLGSGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL 669

[Close]
BLAST of Lag0041138.1 vs. NCBI nr
Match: KJB36649.1 (hypothetical protein B456_006G168700 [Gossypium raimondii])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-11
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 10  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL 56
           GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEENVS+L
Sbjct: 91  GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENVSVL 136

[Close]
BLAST of Lag0041138.1 vs. NCBI nr
Match: KAB2598118.1 (Ribosomal protein S12/S23 family protein [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-10
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 10 GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSI 55
          GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEENVS+
Sbjct: 55 GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENVSV 99

[Close]
BLAST of Lag0041138.1 vs. NCBI nr
Match: XP_013616738.1 (PREDICTED: 40S ribosomal protein S23-2, partial [Brassica oleracea var. oleracea])

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-10
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 7  LLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL 56
          L SGIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Sbjct: 1  LCSGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL 49

[Close]
BLAST of Lag0041138.1 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 10  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL 56
           GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Sbjct: 55  GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL 100

[Close]
BLAST of Lag0041138.1 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 10  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL 56
           GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Sbjct: 55  GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL 100

[Close]
BLAST of Lag0041138.1 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 10  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL 56
           GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Sbjct: 55  GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL 100

[Close]
BLAST of Lag0041138.1 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 10  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL 56
           GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Sbjct: 55  GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL 100

[Close]
BLAST of Lag0041138.1 vs. ExPASy Swiss-Prot
Match: Q8I7D5 (40S ribosomal protein S23 OS=Ciona intestinalis OX=7719 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-11
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 10  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL 56
           G+EAKQP+S I K  RVQLIKNGKKI A V NDGCLNYIEEN  +L
Sbjct: 56  GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVL 101

The following BLAST results are available for this feature:
BLAST of Lag0041138.1 vs. NCBI nr
Match NameE-valueIdentityDescription
VDD34784.14.7e-1179.17unnamed protein product, partial [Brassica oleracea][more]
TQE03805.14.7e-1180.00hypothetical protein C1H46_010612, partial [Malus baccata][more]
KJB36649.14.7e-1184.78hypothetical protein B456_006G168700 [Gossypium raimondii][more]
KAB2598118.11.4e-1084.44Ribosomal protein S12/S23 family protein [Pyrus ussuriensis x Pyrus communis][more]
XP_013616738.11.4e-1079.59PREDICTED: 40S ribosomal protein S23-2, partial [Brassica oleracea var. oleracea... [more]
BLAST of Lag0041138.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SF351.2e-1280.4340S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2[more]
P492011.2e-1280.4340S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2[more]
Q9M5Z91.2e-1280.4340S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1[more]
P462971.2e-1280.4340S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1[more]
Q8I7D51.3e-1173.9140S ribosomal protein S23 OS=Ciona intestinalis OX=7719 GN=RPS23 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 9..57
e-value: 5.4E-13
score: 48.6
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 10..55
NoneNo IPR availableGENE3D2.40.50.140coord: 6..72
e-value: 1.7E-10
score: 42.4
NoneNo IPR availablePANTHERPTHR11652:SF53BNAA03G00720D PROTEINcoord: 10..55
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 10..58

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0041138Lag0041138gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0041138.1.exon1Lag0041138.1.exon1exon
Lag0041138.1.exon2Lag0041138.1.exon2exon
Lag0041138.1.exon3Lag0041138.1.exon3exon
Lag0041138.1.exon4Lag0041138.1.exon4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0041138.1cds.Lag0041138.1CDS
cds.Lag0041138.1cds.Lag0041138.1_2CDS
cds.Lag0041138.1cds.Lag0041138.1_3CDS
cds.Lag0041138.1cds.Lag0041138.1_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0041138.1Lag0041138.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome