Lag0037884.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0037884.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 10175437 .. 10176134 (-)
Sequence length285
RNA-Seq ExpressionLag0037884.1
SyntenyLag0037884.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATTACGGTACGGTGATATATTACATTTATATTCACAAAACGGTGCGTTTCACTTCAATCAGGCCATCGAATTTTCCACTTCCATTTTTGTCCAAATCTCGGGGTTTCAGTTCAAAGTGAAAGCCCGTACAAATTTTCTTGTAGAATTATTGCAAAGTGCGATAGAAAAAGAAGGAAAAAAAAAAAAGGAAGAAGAAGAAAGAAAGCGAGGAGAGCGAAGGGCAGTTCCATTAAAACCAACAAAATTTCTCTTCGATTTCGCGGCTCTCACGAAGCCTTTCTCTGCAAATAACAGAGTGCAAAGGAGGAAGAGATCTGTGGTGTTATTGCTCAGAAACCAGTTCCTCCTAACAGCGTTTTGAATCGCATTCTTGGGTAAGTTTCCGAATCTCAATCTGTCAACAAATGGATTGCAATTGAATTTCATAACTCTAGAGACCCCATTTTGAAGCCACTCCTTTGTTGTTGTTTCACTTTCGATGTTGACTTTTTTCCCCCAGTGTTTCTCATTATGTTGGCCTGTCGCCATTGCGTATCTTACTTCCTCCAACCCGTCACATGTCTTATGTTGAAACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTCATGTTTATCTCAATTGTTCTTTTCAAGAATTTGGATTCTGTTTCGTTGTCAAATTCTTGCTTTGGTTGGTGTAG

mRNA sequence

ATGTCAATTACGAGTGCAAAGGAGGAAGAGATCTGTGGTGTTATTGCTCAGAAACCAGTTCCTCCTAACAGCGTTTTGAATCGCATTCTTGGTGTTTCTCATTATGTTGGCCTGTCGCCATTGCGTATCTTACTTCCTCCAACCCGTCACATGTCTTATGTTGAAACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTCATGTTTATCTCAATTGTTCTTTTCAAGAATTTGGATTCTGTTTCGTTGTCAAATTCTTGCTTTGGTTGGTGTAG

Coding sequence (CDS)

ATGTCAATTACGAGTGCAAAGGAGGAAGAGATCTGTGGTGTTATTGCTCAGAAACCAGTTCCTCCTAACAGCGTTTTGAATCGCATTCTTGGTGTTTCTCATTATGTTGGCCTGTCGCCATTGCGTATCTTACTTCCTCCAACCCGTCACATGTCTTATGTTGAAACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTCATGTTTATCTCAATTGTTCTTTTCAAGAATTTGGATTCTGTTTCGTTGTCAAATTCTTGCTTTGGTTGGTGTAG

Protein sequence

MSITSAKEEEICGVIAQKPVPPNSVLNRILGVSHYVGLSPLRILLPPTRHMSYVETHLLYFGFKGCCALSHVYLNCSFQEFGFCFVVKFLLWLV
Homology
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BLAST of Lag0037884.1 vs. NCBI nr
Match: KAG7037413.1 (hypothetical protein SDJN02_01039, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 32 VSHYVGLSPLRILLPPTRHMSYVETHLLYFGFKGCCALSHVYL 75
          VSH VGLSPLRIL+PPTR+MS VET LLYFGFKG CALS++ L
Sbjct: 8  VSHCVGLSPLRILVPPTRYMSIVETLLLYFGFKGYCALSYLGL 50

The following BLAST results are available for this feature:
BLAST of Lag0037884.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037413.12.0e-0879.07hypothetical protein SDJN02_01039, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Lag0037884.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0037884Lag0037884gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0037884.1.exon3Lag0037884.1.exon3exon
Lag0037884.1.exon2Lag0037884.1.exon2exon
Lag0037884.1.exon1Lag0037884.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0037884.1cds.Lag0037884.1_3CDS
cds.Lag0037884.1cds.Lag0037884.1_2CDS
cds.Lag0037884.1cds.Lag0037884.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0037884.1Lag0037884.1-proteinpolypeptide