Lag0032887.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032887.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr11: 38530234 .. 38531289 (+)
Sequence length	300
RNA-Seq Expression	Lag0032887.1
Synteny	Lag0032887.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTGCAGAGTTGAAATCCCGCCGTCAATAGGAGAAGGAAACGCCTCAATAGAAGCCGCTGCATCTTCAACCTCATCAACCAACAAACGAATCTCCGACCAAAGGTATTACCTTTTAAGTGTTAATAAAACACATGATTGAATATGAGGGAGAGTTTAAGAACTAAGTTAATTCATTGCAACTTTTGTTTTTTTCTTTGACAATATGTGGAAATAGAGGAATTCGAACCATAGATCTCTTGTTCGATAGTACAAACTTTGAGCTAAATTTATGTGGACTATTTCATTAATTTAATAAACTATGAAAATGATCAGTAACAATAATAACAATGTATTTCTACTTTCTAAACCCTCATATTGGATTGGATGCACGATTCTCTAGACACTTAGCTAGAAAAGCAACCAGGGATAGAAAAAGAAAAAGAGAGCAAAACGAGGGGAAGAAAAGTAAAAAAAAAAAAAAAAAAAAATCACCTCATGACACCAATAAATGAAAATCTCCAGTTACTTTTTTCATATTATCATTGTTATTATTATATTTGTTTTCCTTTCCCTTTTGCCTTTGTTCATTAAATCAAATGTGATTGCGGCCGTCAAATTAATAACCCCTTTTTCTCCATCCCCATTCAATCTTGACTCGTAAAAGGCACATAACATTCATGCAAGTCACTCATCCCAGTTGCCATCTTAAACCAACAAAAAAATGTAATAACTTTAGAAATCTTCAACGTTTTTATTTGTGTTTTTGCTTTGTTTCTTCAAATGGGTTTTGTTTTTTATAGTTCAAAATTTGAATTGGCCACTCAATGGTCTGCAAAAAGGCAACCAATTTGCTTTCCAAAACATTCAAGAAGTGTCCACAACAAAGCAGCAGCAAAGGAGTACTCTCCCTTCACGCCTTGCGGTTTGCAGATCAAAGAGAAAGAGAAAGATAGGGTTTTTTTGAAATCAATTCAGCTTCTTTTTTTTTAATTTTTTTCTAGGGAAAAGGGCTGGCTCTGCCATTGCTGCTAACCCAAAGACTTTAACGAGTGTCGATGGTGATGGTTTCTGA

mRNA sequence

ATGCATTGCAGAGTTGAAATCCCGCCGTCAATAGGAGAAGGAAACGCCTCAATAGAAGCCGCTGCATCTTCAACCTCATCAACCAACAAACGAATCTCCGACCAAAGTTCAAAATTTGAATTGGCCACTCAATGGTCTGCAAAAAGGCAACCAATTTGCTTTCCAAAACATTCAAGAAGTGTCCACAACAAAGCAGCAGCAAAGGAGTACTCTCCCTTCACGCCTTGCGGGAAAAGGGCTGGCTCTGCCATTGCTGCTAACCCAAAGACTTTAACGAGTGTCGATGGTGATGGTTTCTGA

Coding sequence (CDS)

ATGCATTGCAGAGTTGAAATCCCGCCGTCAATAGGAGAAGGAAACGCCTCAATAGAAGCCGCTGCATCTTCAACCTCATCAACCAACAAACGAATCTCCGACCAAAGTTCAAAATTTGAATTGGCCACTCAATGGTCTGCAAAAAGGCAACCAATTTGCTTTCCAAAACATTCAAGAAGTGTCCACAACAAAGCAGCAGCAAAGGAGTACTCTCCCTTCACGCCTTGCGGGAAAAGGGCTGGCTCTGCCATTGCTGCTAACCCAAAGACTTTAACGAGTGTCGATGGTGATGGTTTCTGA

Protein sequence

MHCRVEIPPSIGEGNASIEAAASSTSSTNKRISDQSSKFELATQWSAKRQPICFPKHSRSVHNKAAAKEYSPFTPCGKRAGSAIAANPKTLTSVDGDGF

Homology

The following BLAST results are available for this feature:

BLAST of Lag0032887.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0032887.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..38

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0032887	Lag0032887	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0032887.1.exon1	Lag0032887.1.exon1	exon
Lag0032887.1.exon2	Lag0032887.1.exon2	exon
Lag0032887.1.exon3	Lag0032887.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0032887.1	cds.Lag0032887.1	CDS
cds.Lag0032887.1	cds.Lag0032887.1_2	CDS
cds.Lag0032887.1	cds.Lag0032887.1_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0032887.1	Lag0032887.1-protein	polypeptide