Lag0025585.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0025585.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 15639380 .. 15641322 (-)
Sequence length999
RNA-Seq ExpressionLag0025585.1
SyntenyLag0025585.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGATAGGGACATCCCCAGGACGGAGCAGTCCCAAGAGGTTGGCACGTCATCTGGTGCCAAGAAGAAGAGCGAAGTGGAAGTGCTTGCAGCTAGTCAGAAGGTCAGAAGTTCTCCGTCAGGATCTAGCGCGTGCACTGAGGAGTTCTTGCCCTGTGTCACCGATGAGGAGCTCAAGGCAGAATACCCAGAGCTTTACGATGTCGATGTTCTGATGATGAAGATAGTCCTAAGGTGGGGAGTCAGCATGCCCCTCGCTCAAGGTTAGTAATCCCTTCTCTTCTTAAGTTTATATCTTCTGGTTCTGAAATCTTGTTCTTATGATTTATGCTTGTCTTGTGCATATCTGTTCGTTGATGTGAGTATGCGTGGATCATTCCTTCGTTTTTGTGGCATTGTTTGTCAGCAAATCTTGAAGCTAGTATTGCTAGGGTATCCTCTTTTGGTGCCTTGTTATTTTAAATTTCCCTGTATAGGCTAGCTTCAAGGGAAAAAGGATTTTCCTAGGATAGTTTTGTGATCTAGCTTCTTAGTTGGGATCATGGAATCTTTGTTCCAAAGTGGCTTTCAAAGTCAAGTTTGAGTGTTGCAAGCTGCTGTGAGGTCTCGGGCTAAAATAGCTTTGCAACTCTTATGGGTGCTTCATGGTGCGTAGATCTTCTGTTCCTCAGTTCGTTCAAGGTTCGATTGGTGTCGTCTGGTTTCTAAGGAGTTGAAGATTTCCTTTGAGTTTAGCAGAAGGTTTCCTTAGGATAGTTTGCATCCAATCTCTCTGGTGAGGTCAAGGAGTTAGCTTTCAAGGGATGCCTAAGAATCCAGGTTGAACGTTGCAAGCTTATGTTATGTCTTCGGACTCATAAGTAGCCTTGTCGTTGCTTGGGTTTCGTGAATCAAGTCTCGAGGTTTTTGGACTTGCTCGTGGCGAAGCTCAATGGTGTTGGTTTCTCAAGCCTAGAGTTAGAGCATTCCCTCATGCAGTGAGACCTCAATCCAAAGCCAAGGAGATATTGAGTATCAGTATCGAGTCATGACTGCAGCGTCAGTTGTCGTCTCGACAAGTTACCTTGGTGTGCAGTTATAAGGTAGTGCAACGGTGGTGTTAGTGCCATCTCGTAGCCATTCTTGAAGGATGGTTTGAAAAAGGTGAGTTGGCGCAGCGGAAGCCGTTCCGAAGTAGTTGTTTCCTTCTTCAGTAATGCCTGTTTGAAGTTGGGGTTGAAACTTTCCAACTAAGCGAGTTTAAGTTGGTGAAGTTGTTGATGAAGCCTTTCGTAGGACCGGGATGAGCATTCTTGCGGTTATTGAAGGTGGGTTGTGGTTATGTCAAGCTCAAGTTTAAGTGACGTTAACAGCATGTGTTCTTCAAGTGGCATCGTTGGAATGAGCCTCATGTGTGTTGTGCTGAAGCAGTTAGCTTAGCTCCAACTTTGCTAGTGAAGTTGGCTTTCTCATGCATATGGCTAAGTTCCGGTAGATCGTGCAAGATCCGAGTTCGATCTGGATTTTGTCAGACCTTTAGTGTTCTTAATGCACTTGGTCTAGTTGCCGGTAAGCGAGTTTGCTTCAAGGGTTGTATGCTCAACACAACTCGTCCCAGGAGTTGTTGTAATGCATACACAACTGTTCCTTTTGTGCCTCAGCTTTGAACTTTGGAATCCTAGAAGGAAATGGTTTGCGGAGCAAAAGCCTCTGGTGTTAAGTGCCTTGTGGAGTGTGAGTTGGAGTCAAGGCCAGTCCACCAGTGTGGTTAGGCGAGCTCTTTCGAGTTCTGGAGTTCAGTTTTGGGTGATCATGTGTTCTGGCACGTGGTGTCGTCGAAAGGGGTCTATGCTTGTTGATAAGAAGCTTAGCGTGGGTTCATTGGTCCTTATGAGGTCTTGGAGCGCATCGAGTTGTTGCTTACAGGTTGGCGTTATCTCCGACCACGTCAACTGTGCATGA

mRNA sequence

ATGTTGGATAGGGACATCCCCAGGACGGAGCAGTCCCAAGAGGTTGGCACGTCATCTGGTGCCAAGAAGAAGAGCGAAGTGGAAGTGCTTGCAGCTAGTCAGAAGGTCAGAAGTTCTCCGTCAGGATCTAGCGCGTGCACTGAGGAGTTCTTGCCCTGTGTCACCGATGAGGAGCTCAAGGCAGAATACCCAGAGCTTTACGATGTCGATGTTCTGATGATGAAGATAGTCCTAAGGTGGGGAGTCAGCATGCCCCTCGCTCAAGCAAATCTTGAAGCTAGTATTGCTAGGATCTTCTGTTCCTCAGTTCGTTCAAGGTTCGATTGGTGTCGTCTGGTTTCTAAGGAGTTGAAGATTTCCTTTGAGTTTAGCAGAAGTCTCGAGGTTTTTGGACTTGCTCGTGGCGAAGCTCAATGGTGTTGGTTTCTCAAGCCTAGAGTTAGAGCATTCCCTCATGCACATGTGTTCTTCAAGTGGCATCGTTGGAATGAGCCTCATGTGTGTTGTGCTGAAGCAGTTAGCTTAGCTCCAACTTTGCTAGTGAAGTTGGCTTTCTCATGCATATGGCTAAGTTCCGGTAGATCGTGCAAGATCCGAGTTCGATCTGGATTTTGTCAGACCTTTAGTGTTCTTAATGCACTTGGTCTAGTTGCCGGAGTTGTTGTAATGCATACACAACTGTTCCTTTTGTGCCTCAGCTTTGAACTTTGGAATCCTAGAAGGAAATGGTTTGCGGAGCAAAAGCCTCTGGTGTTAAGTGCCTTGTGGAGTGTGAGTTGGAGTCAAGGCCAGTCCACCAGTGTGGTTAGGCGAGCTCTTTCGAGTTCTGGAGTTCAGTTTTGGGTGATCATGTGTTCTGGCACGTGGTGTCGTCGAAAGGGGTCTATGCTTGTTGATAAGAAGCTTAGCGTGGGTTCATTGGTCCTTATGAGGTCTTGGAGCGCATCGAGTTGTTGCTTACAGGTTGGCGTTATCTCCGACCACGTCAACTGTGCATGA

Coding sequence (CDS)

ATGTTGGATAGGGACATCCCCAGGACGGAGCAGTCCCAAGAGGTTGGCACGTCATCTGGTGCCAAGAAGAAGAGCGAAGTGGAAGTGCTTGCAGCTAGTCAGAAGGTCAGAAGTTCTCCGTCAGGATCTAGCGCGTGCACTGAGGAGTTCTTGCCCTGTGTCACCGATGAGGAGCTCAAGGCAGAATACCCAGAGCTTTACGATGTCGATGTTCTGATGATGAAGATAGTCCTAAGGTGGGGAGTCAGCATGCCCCTCGCTCAAGCAAATCTTGAAGCTAGTATTGCTAGGATCTTCTGTTCCTCAGTTCGTTCAAGGTTCGATTGGTGTCGTCTGGTTTCTAAGGAGTTGAAGATTTCCTTTGAGTTTAGCAGAAGTCTCGAGGTTTTTGGACTTGCTCGTGGCGAAGCTCAATGGTGTTGGTTTCTCAAGCCTAGAGTTAGAGCATTCCCTCATGCACATGTGTTCTTCAAGTGGCATCGTTGGAATGAGCCTCATGTGTGTTGTGCTGAAGCAGTTAGCTTAGCTCCAACTTTGCTAGTGAAGTTGGCTTTCTCATGCATATGGCTAAGTTCCGGTAGATCGTGCAAGATCCGAGTTCGATCTGGATTTTGTCAGACCTTTAGTGTTCTTAATGCACTTGGTCTAGTTGCCGGAGTTGTTGTAATGCATACACAACTGTTCCTTTTGTGCCTCAGCTTTGAACTTTGGAATCCTAGAAGGAAATGGTTTGCGGAGCAAAAGCCTCTGGTGTTAAGTGCCTTGTGGAGTGTGAGTTGGAGTCAAGGCCAGTCCACCAGTGTGGTTAGGCGAGCTCTTTCGAGTTCTGGAGTTCAGTTTTGGGTGATCATGTGTTCTGGCACGTGGTGTCGTCGAAAGGGGTCTATGCTTGTTGATAAGAAGCTTAGCGTGGGTTCATTGGTCCTTATGAGGTCTTGGAGCGCATCGAGTTGTTGCTTACAGGTTGGCGTTATCTCCGACCACGTCAACTGTGCATGA

Protein sequence

MLDRDIPRTEQSQEVGTSSGAKKKSEVEVLAASQKVRSSPSGSSACTEEFLPCVTDEELKAEYPELYDVDVLMMKIVLRWGVSMPLAQANLEASIARIFCSSVRSRFDWCRLVSKELKISFEFSRSLEVFGLARGEAQWCWFLKPRVRAFPHAHVFFKWHRWNEPHVCCAEAVSLAPTLLVKLAFSCIWLSSGRSCKIRVRSGFCQTFSVLNALGLVAGVVVMHTQLFLLCLSFELWNPRRKWFAEQKPLVLSALWSVSWSQGQSTSVVRRALSSSGVQFWVIMCSGTWCRRKGSMLVDKKLSVGSLVLMRSWSASSCCLQVGVISDHVNCA
Homology
The following BLAST results are available for this feature:
BLAST of Lag0025585.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0025585.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0025585.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0025585.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0025585Lag0025585gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0025585.1.exon6Lag0025585.1.exon6exon
Lag0025585.1.exon5Lag0025585.1.exon5exon
Lag0025585.1.exon4Lag0025585.1.exon4exon
Lag0025585.1.exon3Lag0025585.1.exon3exon
Lag0025585.1.exon2Lag0025585.1.exon2exon
Lag0025585.1.exon1Lag0025585.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0025585.1cds.Lag0025585.1_6CDS
cds.Lag0025585.1cds.Lag0025585.1_5CDS
cds.Lag0025585.1cds.Lag0025585.1_4CDS
cds.Lag0025585.1cds.Lag0025585.1_3CDS
cds.Lag0025585.1cds.Lag0025585.1_2CDS
cds.Lag0025585.1cds.Lag0025585.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0025585.1Lag0025585.1-proteinpolypeptide