Lag0021986.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021986.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr7: 15429043 .. 15430404 (+)
Sequence length	510
RNA-Seq Expression	Lag0021986.1
Synteny	Lag0021986.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGAGAATGCTCTCTTGTTGATGTCATCATGCCTTTTTTTTCAACTGAATCGCTTCTCGCTCTCGGTACGTGCTCGACACCTTTTTTAGTTTTTTTTTTAATAATTTTTATTCGTCTTCTCAATTCTCACTCTCGGTGATGAGGTCTCAATTCGTGCTCTCGCTTCTCGCTTCAGTTCTAAATGACATTTCACGCACACGATAATTGTCTGTAGGTACGTCTGTTGTAAACGAAGCCTCTAAGCCCAAGAAATTTTCGCTAGTCAGTGTCACATCAAATCCATTTAATTACAAATTCCAATTATTTAAGCAAAGCAAATGGATGAACTTGAATTTTTTTTTCCTAAGTTCGAACACGGTTCTATGAGTTTTCATTCTCATCCCAAACCTCCAAGGTGTCTTGTGTTTAGAAAGATTTAAACAACTGGGATGTACATAAAGATTGAACCAGGTATGCAGATATGCATGCAGTTGTTTGCAAAAGCATTTGTAGAATGAGTATGAAATGTTCGTGGAGTGGGTTTTGAACATTGTTTCTACGTGGTGCATTGTTCGAATTTTGTAGGTTACATTATGTTACTGATAGTTGTAGGAGTTGACGATGCAAGTGAGCAACCGTCCCACAATACAAGATTGTAGTACAGTAGAGGAAATGAACTAGAGCGAGGCCAATAGCGAAACCGAGACCAAGAGTGAGACCTTTCGTTTTCTCTAATGTAATTTTGTTTTTCAATAGAGCAAGACCCAAGAACCAGTAGCGAGAGTATGAATACAAAACCGAGATCGAGTAAAGAGAGAGAAACGAGAGCGAGATATTGGCAGAGAGCAAGGAGTCCAAATTTGGTAATTTTCTTGGTTTTTTAGATTCCCATTGATTTTATTTGTCTTATGTGTACTCTTAATTGAAGGATGGAGATGAAGAAATGCTTACTCATTCGATACAATGGTACATGGGATAAGGTCCACGGTTGTTACGCCCGAGGGGAATTGATGGGTATTCTTGTGCCCATGACACTGAAGTATGCACAACTGAAAGATATTGTATGTGGAATTGTGTGGACGCAAGCTCTATAGAGTTTGAGATTATAATGAGGGTGAAATATAAATTGGTGTTTGAAGCCCTTCCACAATACATACGAAATGATAGGGATGTACGTTTTCTTCTCTCCTGTGATGATCTTTCAACACTTAAATTGTTCGTAACGGCCGAGCCAACTCATTGTGAGGACGTGTACGTACTAGAAATGCCAAATGTGGAATCATTCCATATGGATCAACGAGAGTATGATATGGATCCATTGGATGTGAATGCAATACCGAGGACAACGACAACTGTAACCCATGGGATTCATACATGA

mRNA sequence

ATGAATGGAGAATGCTCTCTTGTTGATGTCATCATGCCTTTTTTTTCAACTGAATCGCTTCTCGCTCTCGGTTACATTATGTTACTGATAGTTGTAGGAGTTGACGATGCAAGTCCACGGTTGTTACGCCCGAGGGGAATTGATGGGTATTCTTGTGCCCATGACACTGAAGTATGCACAACTGAAAGATATTGTATGTGGAATTGTGTGGACGCAAGCTCTATAGAGTTTGAGATTATAATGAGGGTGAAATATAAATTGGTGTTTGAAGCCCTTCCACAATACATACGAAATGATAGGGATGTACGTTTTCTTCTCTCCTGTGATGATCTTTCAACACTTAAATTGTTCGTAACGGCCGAGCCAACTCATTGTGAGGACGTGTACGTACTAGAAATGCCAAATGTGGAATCATTCCATATGGATCAACGAGAGTATGATATGGATCCATTGGATGTGAATGCAATACCGAGGACAACGACAACTGTAACCCATGGGATTCATACATGA

Coding sequence (CDS)

ATGAATGGAGAATGCTCTCTTGTTGATGTCATCATGCCTTTTTTTTCAACTGAATCGCTTCTCGCTCTCGGTTACATTATGTTACTGATAGTTGTAGGAGTTGACGATGCAAGTCCACGGTTGTTACGCCCGAGGGGAATTGATGGGTATTCTTGTGCCCATGACACTGAAGTATGCACAACTGAAAGATATTGTATGTGGAATTGTGTGGACGCAAGCTCTATAGAGTTTGAGATTATAATGAGGGTGAAATATAAATTGGTGTTTGAAGCCCTTCCACAATACATACGAAATGATAGGGATGTACGTTTTCTTCTCTCCTGTGATGATCTTTCAACACTTAAATTGTTCGTAACGGCCGAGCCAACTCATTGTGAGGACGTGTACGTACTAGAAATGCCAAATGTGGAATCATTCCATATGGATCAACGAGAGTATGATATGGATCCATTGGATGTGAATGCAATACCGAGGACAACGACAACTGTAACCCATGGGATTCATACATGA

Protein sequence

MNGECSLVDVIMPFFSTESLLALGYIMLLIVVGVDDASPRLLRPRGIDGYSCAHDTEVCTTERYCMWNCVDASSIEFEIIMRVKYKLVFEALPQYIRNDRDVRFLLSCDDLSTLKLFVTAEPTHCEDVYVLEMPNVESFHMDQREYDMDPLDVNAIPRTTTTVTHGIHT

Homology

[Close]

BLAST of Lag0021986.1 vs. NCBI nr
Match: XP_038891939.1 (uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-09
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 66  MWNCVDASSIEFEIIMRVKYKLVFEALPQYIRNDRDVRFLLSCDDLSTLKLFVTAEPTHC 125
           ++   + SS EF++I++VKYKL +EA PQYIRND  +RFLL  +DLS L+L VT +    
Sbjct: 79  IYGVTNVSSSEFDLILKVKYKLEYEAPPQYIRNDDGIRFLLFREDLSRLQLSVTLKSNVD 138

Query: 126 EDVYV-----------LEMPNVESFHMDQREYDMDPLDVNAIP 158
           E++ +           +E    ES+   Q EYD+ PL  N +P
Sbjct: 139 ENIRMGFRNVSYDDTTMERQYKESYQYRQEEYDI-PLSTNTVP 180

[Close]

BLAST of Lag0021986.1 vs. NCBI nr
Match: XP_038891938.1 (uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-09
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 66  MWNCVDASSIEFEIIMRVKYKLVFEALPQYIRNDRDVRFLLSCDDLSTLKLFVTAEPTHC 125
           ++   + SS EF++I++VKYKL +EA PQYIRND  +RFLL  +DLS L+L VT +    
Sbjct: 110 IYGVTNVSSSEFDLILKVKYKLEYEAPPQYIRNDDGIRFLLFREDLSRLQLSVTLKSNVD 169

Query: 126 EDVYV-----------LEMPNVESFHMDQREYDMDPLDVNAIP 158
           E++ +           +E    ES+   Q EYD+ PL  N +P
Sbjct: 170 ENIRMGFRNVSYDDTTMERQYKESYQYRQEEYDI-PLSTNTVP 211

[Close]

BLAST of Lag0021986.1 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-08
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 66  MWNCVDASSIEFEIIMRVKYKLVFEALPQYIRNDRDVRFLLSCDDLSTLKLFVTAEPTHC 125
           ++   + + +EF+++MRVKYKL FEA P YI+ND DV   L  DDLS ++L+VT +  H 
Sbjct: 163 IYRVANVNCLEFDVVMRVKYKLDFEAPPLYIQNDDDVYIFLCLDDLSRVQLYVTLKSYHD 222

Query: 126 EDVYVL------EMPNVESFHMDQREYDMDPLDVNAIPRTTTTVTHGIH 169
           E+V ++      +     S+  +Q E D+ PL +N    T +     IH
Sbjct: 223 ENVKMIHDGIGVDRQYEASYEFNQEECDI-PLSMNTQLSTLSIDNDNIH 270

[Close]

BLAST of Lag0021986.1 vs. NCBI nr
Match: XP_038904780.1 (uncharacterized protein LOC120091048 [Benincasa hispida])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 38/112 (33.93%), Postives = 56/112 (50.00%), Query Frame = 0


Query: 66  MWNCVDASSIEFEIIMRVKYKLVFEALPQYIRNDRDVRFLLSCDDLSTLKLFVTAEPTHC 125
           ++     SS EF++I++VKY L FEA PQ+I +D DV FLL  ++LS L++ VT +    
Sbjct: 29  IYRATKVSSSEFDLILKVKYNLEFEAPPQWIMDDDDVHFLLLREELSRLQIAVTLKSKQD 88

Query: 126 E-----------DVYVLEMPNVESFHMDQREYDMD-------PLDVNAIPRT 160
           E           D    +    ES+   Q E D+        PL +N +P T
Sbjct: 89  ERVGMGFGNVSYDDTAADRQYNESYQFCQEEDDIPLSTNIDIPLSINIVPST 140

The following BLAST results are available for this feature:

BLAST of Lag0021986.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891939.1	2.5e-09	40.78	uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida]	[more]
XP_038891938.1	2.5e-09	40.78	uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida]	[more]
XP_038888098.1	4.7e-08	36.70	uncharacterized protein LOC120078004 [Benincasa hispida]	[more]
XP_038904780.1	1.1e-04	33.93	uncharacterized protein LOC120091048 [Benincasa hispida]	[more]

BLAST of Lag0021986.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0021986	Lag0021986	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0021986.1.exon1	Lag0021986.1.exon1	exon
Lag0021986.1.exon2	Lag0021986.1.exon2	exon
Lag0021986.1.exon3	Lag0021986.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0021986.1	cds.Lag0021986.1	CDS
cds.Lag0021986.1	cds.Lag0021986.1_2	CDS
cds.Lag0021986.1	cds.Lag0021986.1_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0021986.1	Lag0021986.1-protein	polypeptide