Lag0021368.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0021368.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 6898873 .. 6902643 (-)
Sequence length558
RNA-Seq ExpressionLag0021368.1
SyntenyLag0021368.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGCAGGGACCAAAGTGCTCCTTATCTCAAACCTCAGGGGTACTTTTGTTGAGTTTGAAAACTCAGGGACTAAAGTGTCACTTAATCCAAACCTCAAGGACCAAAAGTGTATTTTTCCCTAAAATATTTTTTTGAATTCAACAACATTTGAGAGTGGAGGGATTCAAACCTTATACCTCTTGGCCGAGAGTAAACACAAATCATCGACAAGGATGAAAATATTGTTATCAATATTAATACCAGAATTTGCTAAAGCGAGCTTAGCTCAGTGGTAACTGGCATGTACCCTCGATCATGAGTAAATTAATAATTAAGTTGTTTTTACTTCCTAACTGAGTTATAGATGTTATTATTAGTATATTTATATTTGTATGTGATCAAAATGTACGATGTCTTTTTATGTTTTATGCGTATTTATAAATGATATCGATTGATCCTCAATATTCATGTCGAACCCTCCAATTTATAGATATATTGACAGATATAATCTTGATCACCTTTGAGCCACACTCACTTTGGCAGGATTTACATAAAATTTTACAATTTAAAGTTACTGAATGTATAATATTATGTTAATATATACACACAATTGACCCTCCACATATCTCCACAATGGTAGATGTGTCACCACTTTGGACATAAGTCATCATTGTTTTGCTTTTGGTTTCATCCCAAAAAGTCTCATTCCAATGAAGATATTGTCCGTCACTTATATACCCATAATCTAATTCCCTTTTCTAGCCAATGTGGCACTTTAGGATAAATCAATACTCTTTACCCCTAAACTTGGTAGGTCGATTCAATGACTACAAAAAAATGTCAAGAAATACGGTTTTGACATTTTTTCAATGTCATGAAAAGTCAAATTTGTAGTCATATATGTCAATGCACCCACTAATTTTAATAAAAATAAATGTAAAAATCCAAAAAGAGGGTCATTAATTTCAATAGAAAATCAAGTAATGAATGTCCTTGTTTCAAAAAAAAAAAAAAAAACAAAATTATGTTTGATCCATGCACACAAATTGAATTTAACAATTGAATAACTCCGGCTAAAATTCACAAATTTCAATAAGAAAGTTGTTGATTATAAAATACAAATAGGTTTCAATTATATCTCTAAACTTTGAGAAGTCTCATTTTTATCTTTGAACTTCGAAAATTTTTCTAAAAAATGCCTTTGGACAGTTTTTGAAGATGGAATTGCCGCAACAACTAATTGTAAAAATATTGAGAAGCCATCCATGAAATCATTTACATCATTGTTTATGTAAACTGACGTGACAGTTGATGCGTAAAAATTGATTATTGTAAATTATTTTAATAATATTTTTTAAGATGAAATAAATGGTAACAACAATTTTATTTTTATTTTTTTTATATAATCGTAAATAATATAATACATGTCTTCAAATTTTCTATATTTCTACATATATATCAACTATCACATTAATTTTTATCATTTATTTTTAATGAAAAAGATATTTTTGGGATAATTTCAAAGTTTCAGGGCATTTTTTGGAATAAATTTCAAAATTTAAGGGTAAAAACGAAACTTTTCAAAGTTTAGAGATATAATTAAAATCTACCTCTACCCTAAAGTTTAGATTTTTTTTTTTTTTTAGAAAAAGTTTAGAGATATTTTATCCAAGTTTAACCAAAATTATTTTAATGTAATTTTTAAAAAAAAAAAATCCTACCAACTTTTTAATAATTGACATATATTTTATAATTCATTGACCGGATAAAATCTTTTAAAATACTATTCTTTAAAAATGAAAAAAAAAAAAAAAAAAAAAACCTTCATAAGGGCCTTAACTAAAAAGCACGACTATCAAAAAGTTATAACACTTCTCAAATTCAAAGATAAAATTTCCATGTTAATGTTCAATACATCTCACTAATTTCAAGAATAAAACCTAATTTATATTTTCAAATTATAAAATCCTAAAATTAATTTGACATAACTGTTATAGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACAACCGAGGAGAAATCGGACTGGAAGATGGACCAAGGAGGCAAATCCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTGCTCGGCCCGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCTCCACCGCCTCTGGCTGCCTCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAATACCTAAAAACCCTATGAGGATGAGCATGTATTTATATCCCTCTTCGCCACTGAAGAGGGGATCCCGAATTCTATCCCTACACTCTACTCTCTATTCTCTGCTTTCTCCTATTGCTCTTACTTTTCCACGCCCTACCGTTCTGTTTACTGACTTAAGCATCGGAGCCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCAACTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGTGAGATCCTCTGGCCAAAATCGACCATCAACAATAACTTTTCTATTAAATTACAAATTTCAGTTCTTAAATTTTTAACGTTCAATGTGTTCCTAAAATTTAAAATTAAAGCTTCCATAGATGTTTGAACTTTTAAAATATTGTATCTAATAAGTCTTTAAATTTAAAAATATCAAATATGTCGTCCAAACTTTCAACTTTATATCTAATAGGTTCAAAAACATGTTTAACATTTTTAAAAACTAAAGAATCTATCAAACATTAAAATTGAACTTTGCGTCTAATAGGATATTAAACTTCAATTTTGTAGCCAAAGCGAGTTTAGCTCAGCGGTAATTGGTATGTACCCTCGACCATGAGAGCAGAGGTTTGAATACCCCACTCCCAAATGTTGATGTACTCAAAAAAAAGAAAAAAAAAACTTCAATTTTGTATCCTTGTGAACTTTAAAAATGTCAAATAGGTCACTGACTTATTAGACATGCAAAATCAAAAGCTTAAAGAATTATTAAACGACACAAACAAAATCAATAATCAGGAACTTTCTCCCTCGCGGGAAGGAGGCTGCGTTTTTTGGTTTCCTATTTTCCCAAACTGGTTTATCACCCTCCTATCTAAGGGTAGTTGTAACGATTTATTTCCCCTTTTATGAATTCATCTTTTCTCAAAAAAAAAAAAAAAAAAGTATATCAGACATTATTTAAAGCTTAAAAATCTATTTGACACAACCCTGAAAGTTGAGAGATCGAAGTTGTAATTTAACCCGACATTTAAAATTTGGTATATGCCTAATTACATAATTAAATTGAGCACTTTTTGATCCTCCTTCTGGAATCACTGCAAAATTAAACCCACTGTTTTTTCCATTCATCATCTTCTACTTTTCTTCTTCTTCTTCTTTCTCTTTCTCAAAATATATGGAATAAAATTTTCTCATTTATGTACCAAACACCAAATCTTTTTTTTTTTTTTTAATTTTTTTTTATCGAAGAATATTATTAAACACATACGTCTCTCTCTATATAAGGAGATAAGAATCATTCATGGGTGAAGCTTATGGAAAATGTTGAGATTTCAAAAAAAGTCAGTTGATATGATATGATCATACATTATCATTACATTACATTTCATTCCTCTCTCTCTCTTTGCATCTACGGCGACATTCCTATCCCACTCTCTCTCTTTCTCTCTCTTACCCATATAGTTGACATTCTCTTCAACATTATCTTTTCTCTTCTCTTCTTCTTCCTGTGTCTGATTCTTCGCATACTTTCAGGGATAG

mRNA sequence

ATGGACGGCAGGGACCAAAGTGCTCCTTATCTCAAACCTCAGGGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACAACCGAGGAGAAATCGGACTGGAAGATGGACCAAGGAGGCAAATCCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTGCTCGGCCCGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCTCCACCGCCTCTGGCTGCCTCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAATACCTAAAAACCCTATGAGGATGAGCATGTATTTATATCCCTCTTCGCCACTGAAGAGGGGATCCCGAATTCTATCCCTACACTCTACTCTCTATTCTCTGCTTTCTCCTATTGCTCTTACTTTTCCACGCCCTACCGTTCTGTTTACTGACTTAAGCATCGGAGCCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCAACTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGATAG

Coding sequence (CDS)

ATGGACGGCAGGGACCAAAGTGCTCCTTATCTCAAACCTCAGGGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACAACCGAGGAGAAATCGGACTGGAAGATGGACCAAGGAGGCAAATCCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTGCTCGGCCCGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCTCCACCGCCTCTGGCTGCCTCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAATACCTAAAAACCCTATGAGGATGAGCATGTATTTATATCCCTCTTCGCCACTGAAGAGGGGATCCCGAATTCTATCCCTACACTCTACTCTCTATTCTCTGCTTTCTCCTATTGCTCTTACTTTTCCACGCCCTACCGTTCTGTTTACTGACTTAAGCATCGGAGCCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCAACTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGATAG

Protein sequence

MDGRDQSAPYLKPQGQFWTTPIYKELTRTTEEKSDWKMDQGGKSGKWDGPRPKGSGFWPDPLLGPLARAEPVRSRLVSTASGCLGFAWFDLKRLRIPKNPMRMSMYLYPSSPLKRGSRILSLHSTLYSLLSPIALTFPRPTVLFTDLSIGAGVASTTPVCRLLSCRPRLPPSTTNLPLVAREGQG
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..46

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0021368Lag0021368gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0021368.1.exon3Lag0021368.1.exon3exon
Lag0021368.1.exon2Lag0021368.1.exon2exon
Lag0021368.1.exon1Lag0021368.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0021368.1cds.Lag0021368.1_3CDS
cds.Lag0021368.1cds.Lag0021368.1_2CDS
cds.Lag0021368.1cds.Lag0021368.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0021368.1Lag0021368.1-proteinpolypeptide