Lag0019972.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0019972.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLysM domain-containing protein
Locationchr5: 47114519 .. 47114896 (-)
Sequence length378
RNA-Seq ExpressionLag0019972.1
SyntenyLag0019972.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCGTCCCGACCCCTAATCGACGTCGTTTCCTGGTACTCCGCCGTGGGCCTCCTGGGCCTGATTCTGATCGGCTCCATCCGAGAAAGCTCCTCCTCCTCCGCCGCCGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGCCCGTGCGATGAGATTTACGTGGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCCTCTTACAAGCCTACCAAATTCAAATTGGGATCGGAAACTGCTTGA

mRNA sequence

ATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCGTCCCGACCCCTAATCGACGTCGTTTCCTGGTACTCCGCCGTGGGCCTCCTGGGCCTGATTCTGATCGGCTCCATCCGAGAAAGCTCCTCCTCCTCCGCCGCCGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGCCCGTGCGATGAGATTTACGTGGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCCTCTTACAAGCCTACCAAATTCAAATTGGGATCGGAAACTGCTTGA

Coding sequence (CDS)

ATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCGTCCCGACCCCTAATCGACGTCGTTTCCTGGTACTCCGCCGTGGGCCTCCTGGGCCTGATTCTGATCGGCTCCATCCGAGAAAGCTCCTCCTCCTCCGCCGCCGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGCCCGTGCGATGAGATTTACGTGGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCCTCTTACAAGCCTACCAAATTCAAATTGGGATCGGAAACTGCTTGA

Protein sequence

MAVSISRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSETA
Homology
[Close]
BLAST of Lag0019972.1 vs. NCBI nr
Match: KAG6576752.1 (hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014795.1 hypothetical protein SDJN02_22424, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 99/119 (83.19%), Postives = 105/119 (88.24%), Query Frame = 0 

Query: 6   SRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANLLTERPCD 65
           SRT PPSSR LIDVVSWY A+ LLGLILIGSIRE+SSSSA+ DDGG MLR NLLT R CD
Sbjct: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACD 66

Query: 66  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSET 125
           EIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS+ P   KLG +T
Sbjct: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPP--KLGFQT 123

[Close]
BLAST of Lag0019972.1 vs. NCBI nr
Match: XP_022985106.1 (uncharacterized protein LOC111483184 [Cucurbita maxima])

HSP 1 Score: 190.7 bits (483), Expect = 7.8e-45
Identity = 97/119 (81.51%), Postives = 104/119 (87.39%), Query Frame = 0 

Query: 6   SRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANLLTERPCD 65
           SRT PPSSR LIDVVSWY AV +LGLILIGSIRE+SSS++A DDG  MLR NLLT R CD
Sbjct: 7   SRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASA-DDGSQMLRGNLLTGRACD 66

Query: 66  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSET 125
           EIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS+ P   KLG +T
Sbjct: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPP--KLGFQT 122

[Close]
BLAST of Lag0019972.1 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Peptidoglycan-binding LysM domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-41
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0 

Query: 3   VSISRTRPP----SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANL 62
           VSI R+R P    SSRPLIDVVSWY AVGLLGLILIGSIRE+SSSS    D G  LR NL
Sbjct: 4   VSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG---DQGRSLRGNL 63

Query: 63  LTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 113
           +T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 64  VTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 114

[Close]
BLAST of Lag0019972.1 vs. NCBI nr
Match: XP_022157015.1 (uncharacterized protein LOC111023841 [Momordica charantia])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 91/119 (76.47%), Postives = 97/119 (81.51%), Query Frame = 0 

Query: 7   RTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANLLTERPCDE 66
           R+  PSSRP  DVVSWY AVG+L LILIGSIRES+ S+ A DDG L  R NL+  RPCDE
Sbjct: 10  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRL-ARGNLVRGRPCDE 69

Query: 67  IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSETA 126
           IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS  P+    G ETA
Sbjct: 70  IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPS--NSGLETA 125

[Close]
BLAST of Lag0019972.1 vs. NCBI nr
Match: KGN57357.2 (hypothetical protein Csa_009741 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 2.6e-40
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0 

Query: 3   VSISRTRPP--SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANLLT 62
           VS+ R+R P  SSRPLIDVVSWY AVGLLGLILIGSIRE+SSS       G +LR NL+T
Sbjct: 10  VSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSG-----DGRLLRGNLVT 69

Query: 63  ERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 113
            RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 70  WRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 116

The following BLAST results are available for this feature:
BLAST of Lag0019972.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6576752.11.1e-4683.19hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022985106.17.8e-4581.51uncharacterized protein LOC111483184 [Cucurbita maxima][more]
XP_008439155.11.8e-4182.46PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Pep... [more]
XP_022157015.12.0e-4076.47uncharacterized protein LOC111023841 [Momordica charantia][more]
KGN57357.22.6e-4080.36hypothetical protein Csa_009741 [Cucumis sativus][more]
BLAST of Lag0019972.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainPFAMPF01476LysMcoord: 68..109
e-value: 2.3E-4
score: 21.2
IPR018392LysM domainCDDcd00118LysMcoord: 67..109
e-value: 4.30317E-5
score: 36.6945
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 59..118
e-value: 7.0E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR33648EMBRYO SAC 1coord: 12..112
NoneNo IPR availablePANTHERPTHR33648:SF31PROTEIN, PUTATIVE-RELATEDcoord: 12..112

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0019972Lag0019972gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0019972.1.exon1Lag0019972.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0019972.1cds.Lag0019972.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0019972.1Lag0019972.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity