Lag0019972 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019972
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LysM domain-containing protein
Location	chr5: 47114519 .. 47114896 (-)
RNA-Seq Expression	Lag0019972
Synteny	Lag0019972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCGTCCCGACCCCTAATCGACGTCGTTTCCTGGTACTCCGCCGTGGGCCTCCTGGGCCTGATTCTGATCGGCTCCATCCGAGAAAGCTCCTCCTCCTCCGCCGCCGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGCCCGTGCGATGAGATTTACGTGGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCCTCTTACAAGCCTACCAAATTCAAATTGGGATCGGAAACTGCTTGA

mRNA sequence

ATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCGTCCCGACCCCTAATCGACGTCGTTTCCTGGTACTCCGCCGTGGGCCTCCTGGGCCTGATTCTGATCGGCTCCATCCGAGAAAGCTCCTCCTCCTCCGCCGCCGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGCCCGTGCGATGAGATTTACGTGGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCCTCTTACAAGCCTACCAAATTCAAATTGGGATCGGAAACTGCTTGA

Coding sequence (CDS)

ATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCGTCCCGACCCCTAATCGACGTCGTTTCCTGGTACTCCGCCGTGGGCCTCCTGGGCCTGATTCTGATCGGCTCCATCCGAGAAAGCTCCTCCTCCTCCGCCGCCGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGCCCGTGCGATGAGATTTACGTGGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCCTCTTACAAGCCTACCAAATTCAAATTGGGATCGGAAACTGCTTGA

Protein sequence

MAVSISRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSETA

Homology

[Close]

BLAST of Lag0019972 vs. NCBI nr
Match: KAG6576752.1 (hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014795.1 hypothetical protein SDJN02_22424, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 99/119 (83.19%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 6   SRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANLLTERPCD 65
           SRT PPSSR LIDVVSWY A+ LLGLILIGSIRE+SSSSA+ DDGG MLR NLLT R CD
Sbjct: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACD 66

Query: 66  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSET 125
           EIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS+ P   KLG +T
Sbjct: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPP--KLGFQT 123

[Close]

BLAST of Lag0019972 vs. NCBI nr
Match: XP_022985106.1 (uncharacterized protein LOC111483184 [Cucurbita maxima])

HSP 1 Score: 190.7 bits (483), Expect = 7.8e-45
Identity = 97/119 (81.51%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 6   SRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANLLTERPCD 65
           SRT PPSSR LIDVVSWY AV +LGLILIGSIRE+SSS++A DDG  MLR NLLT R CD
Sbjct: 7   SRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASA-DDGSQMLRGNLLTGRACD 66

Query: 66  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSET 125
           EIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS+ P   KLG +T
Sbjct: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPP--KLGFQT 122

[Close]

BLAST of Lag0019972 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Peptidoglycan-binding LysM domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-41
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 3   VSISRTRPP----SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANL 62
           VSI R+R P    SSRPLIDVVSWY AVGLLGLILIGSIRE+SSSS    D G  LR NL
Sbjct: 4   VSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG---DQGRSLRGNL 63

Query: 63  LTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 113
           +T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 64  VTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 114

[Close]

BLAST of Lag0019972 vs. NCBI nr
Match: XP_022157015.1 (uncharacterized protein LOC111023841 [Momordica charantia])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 91/119 (76.47%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 7   RTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANLLTERPCDE 66
           R+  PSSRP  DVVSWY AVG+L LILIGSIRES+ S+ A DDG L  R NL+  RPCDE
Sbjct: 10  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRL-ARGNLVRGRPCDE 69

Query: 67  IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSETA 126
           IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS  P+    G ETA
Sbjct: 70  IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPS--NSGLETA 125

[Close]

BLAST of Lag0019972 vs. NCBI nr
Match: KGN57357.2 (hypothetical protein Csa_009741 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 2.6e-40
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 3   VSISRTRPP--SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSSAADDDGGLMLRANLLT 62
           VS+ R+R P  SSRPLIDVVSWY AVGLLGLILIGSIRE+SSS       G +LR NL+T
Sbjct: 10  VSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSG-----DGRLLRGNLVT 69

Query: 63  ERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 113
            RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 70  WRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 116

The following BLAST results are available for this feature:

BLAST of Lag0019972 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576752.1	1.1e-46	83.19	hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022985106.1	7.8e-45	81.51	uncharacterized protein LOC111483184 [Cucurbita maxima]	[more]
XP_008439155.1	1.8e-41	82.46	PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Pep...	[more]
XP_022157015.1	2.0e-40	76.47	uncharacterized protein LOC111023841 [Momordica charantia]	[more]
KGN57357.2	2.6e-40	80.36	hypothetical protein Csa_009741 [Cucumis sativus]	[more]

BLAST of Lag0019972 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 68..109 e-value: 2.3E-4 score: 21.2
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 67..109 e-value: 4.30317E-5 score: 36.6945
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 59..118 e-value: 7.0E-7 score: 30.7
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 12..112
None	No IPR available	PANTHER	PTHR33648:SF31	PROTEIN, PUTATIVE-RELATED	coord: 12..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019972.1	Lag0019972.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity