Lag0019753.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0019753.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProline-rich receptor-like protein kinase PERK2
Locationchr5: 45135344 .. 45135736 (-)
Sequence length393
RNA-Seq ExpressionLag0019753.1
SyntenyLag0019753.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTTTGGTGTTTTCAGCCATCGACACCGGTCGAGCCGCTCGTCATCTCTTGCAAACCGCTCCGCCGAACTTGCCGGGGCTGCCCTCACTGCCTAAACCAACAGCACTGCCGCCTCTACCGCCCTTGCCAACGATGCCGAACCCGACGACGGGGCTGGGAATTCCCCCTATTCCAAATCTTCCACAGCCAACATTGCCAACTACTCAACCATCTCTGCCTAAGTTACCTCCGCTTCCAAGCTTTCCCGGTAACATTCCGACCGGGGTGGCTCTACCTCCGCTCCCGACAACTTCGCTTCCGAACCTACCACCGGTCTCCACCATCCCGACGATGTTCCCGTCGATTCCTTTCCTTTCCCCGCCGCCAGCCACCACCTCTTCACCTTGA

mRNA sequence

ATGGCTACTTTGGTGTTTTCAGCCATCGACACCGGTCGAGCCGCTCGTCATCTCTTGCAAACCGCTCCGCCGAACTTGCCGGGGCTGCCCTCACTGCCTAAACCAACAGCACTGCCGCCTCTACCGCCCTTGCCAACGATGCCGAACCCGACGACGGGGCTGGGAATTCCCCCTATTCCAAATCTTCCACAGCCAACATTGCCAACTACTCAACCATCTCTGCCTAAGTTACCTCCGCTTCCAAGCTTTCCCGGTAACATTCCGACCGGGGTGGCTCTACCTCCGCTCCCGACAACTTCGCTTCCGAACCTACCACCGGTCTCCACCATCCCGACGATGTTCCCGTCGATTCCTTTCCTTTCCCCGCCGCCAGCCACCACCTCTTCACCTTGA

Coding sequence (CDS)

ATGGCTACTTTGGTGTTTTCAGCCATCGACACCGGTCGAGCCGCTCGTCATCTCTTGCAAACCGCTCCGCCGAACTTGCCGGGGCTGCCCTCACTGCCTAAACCAACAGCACTGCCGCCTCTACCGCCCTTGCCAACGATGCCGAACCCGACGACGGGGCTGGGAATTCCCCCTATTCCAAATCTTCCACAGCCAACATTGCCAACTACTCAACCATCTCTGCCTAAGTTACCTCCGCTTCCAAGCTTTCCCGGTAACATTCCGACCGGGGTGGCTCTACCTCCGCTCCCGACAACTTCGCTTCCGAACCTACCACCGGTCTCCACCATCCCGACGATGTTCCCGTCGATTCCTTTCCTTTCCCCGCCGCCAGCCACCACCTCTTCACCTTGA

Protein sequence

MATLVFSAIDTGRAARHLLQTAPPNLPGLPSLPKPTALPPLPPLPTMPNPTTGLGIPPIPNLPQPTLPTTQPSLPKLPPLPSFPGNIPTGVALPPLPTTSLPNLPPVSTIPTMFPSIPFLSPPPATTSSP
Homology
BLAST of Lag0019753.1 vs. NCBI nr
Match: XP_038904304.1 (RNA-binding protein 12-like [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 105/131 (80.15%), Postives = 110/131 (83.97%), Query Frame = 0

Query: 1   MATLVFSAIDTGRAARHLLQTAPPNLPGLPSLPKPTALPPLPPLPTMPNPTTGLGIPPIP 60
           MA LVFS IDTGRAARHLLQTAPPN+PG PSLPKPTALPPLPPLPT P      G+P IP
Sbjct: 13  MAILVFSTIDTGRAARHLLQTAPPNMPGFPSLPKPTALPPLPPLPTGP------GMPSIP 72

Query: 61  NLPQPTLPTTQPSLPKLPPLPSFPGNIP-TGVALPPLPTTSLPNLPPVSTIPTMFPSIPF 120
           NLPQPTLP+   SLPKLPPLPSFPGNIP TGV LPPLPTTSLP LP   +IPT FPSIPF
Sbjct: 73  NLPQPTLPS---SLPKLPPLPSFPGNIPVTGVTLPPLPTTSLPTLP---SIPTTFPSIPF 131

Query: 121 LSPPPATTSSP 131
           L+PPPATTSSP
Sbjct: 133 LTPPPATTSSP 131

BLAST of Lag0019753.1 vs. NCBI nr
Match: XP_023518060.1 (proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 2.3e-39
Identity = 100/130 (76.92%), Postives = 107/130 (82.31%), Query Frame = 0

Query: 1   MATLVFSAIDTGRAARHLLQTAPPNLPGLPSLPKPTALPPLPPLPTMPNPTTGLGIPPIP 60
           +ATLVFSAIDTGRAARHLLQTAPPN+PGLPS      LPPLPPLPTMPNPTTG GIP IP
Sbjct: 12  VATLVFSAIDTGRAARHLLQTAPPNVPGLPS------LPPLPPLPTMPNPTTGSGIPSIP 71

Query: 61  NLPQPTLPTTQPSLPKLPPLPSFPGNIPTGVALPPLPTTSLPNLPPVSTIPTMFPSIPFL 120
           +LPQPTLPTTQPSLPKLPP P+FP NIPTG+ALPPLPTT LPNL          PSIP L
Sbjct: 72  SLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNL----------PSIPSL 125

Query: 121 SPPPATTSSP 131
           +PPP T+SSP
Sbjct: 132 TPPPTTSSSP 125

BLAST of Lag0019753.1 vs. NCBI nr
Match: XP_023518061.1 (protein PELPK1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-37
Identity = 101/133 (75.94%), Postives = 106/133 (79.70%), Query Frame = 0

Query: 1   MATLVFSAIDTGRAARHLLQTAPPNLPGLPSLPKPTALPPLPPLPTMPNPTTGLGIPPIP 60
           M TL+FSAIDTGRAARHLLQTAPPN+P LPS      LPPLPPLPTMPNPTTG GIP IP
Sbjct: 12  MVTLMFSAIDTGRAARHLLQTAPPNVPRLPS------LPPLPPLPTMPNPTTGPGIPSIP 71

Query: 61  NLPQ---PTLPTTQPSLPKLPPLPSFPGNIPTGVALPPLPTTSLPNLPPVSTIPTMFPSI 120
           +LPQ   PTLPTTQPSLPKLPPLPSFP NIPTG+ALPPLPTT LPNL          PSI
Sbjct: 72  SLPQPTLPTLPTTQPSLPKLPPLPSFPRNIPTGMALPPLPTTLLPNL----------PSI 128

Query: 121 PFLSPPPATTSSP 131
           P L+PPP TTSSP
Sbjct: 132 PSLTPPPTTTSSP 128

BLAST of Lag0019753.1 vs. NCBI nr
Match: KAG7027509.1 (hypothetical protein SDJN02_11523, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-34
Identity = 93/130 (71.54%), Postives = 101/130 (77.69%), Query Frame = 0

Query: 1   MATLVFSAIDTGRAARHLLQTAPPNLPGLPSLPKPTALPPLPPLPTMPNPTTGLGIPPIP 60
           MATLVFSAIDTGRAARHLLQ A P++PGLPS         LPPLP +PNPTTG GIP IP
Sbjct: 12  MATLVFSAIDTGRAARHLLQIASPSVPGLPS---------LPPLPPLPNPTTGSGIPSIP 71

Query: 61  NLPQPTLPTTQPSLPKLPPLPSFPGNIPTGVALPPLPTTSLPNLPPVSTIPTMFPSIPFL 120
           +LPQPTLPTTQPSLPKLPP P+FP NIPTG+ALPPLPTT LPNL          PSIP L
Sbjct: 72  SLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNL----------PSIPSL 122

Query: 121 SPPPATTSSP 131
           +PPP T+SSP
Sbjct: 132 TPPPTTSSSP 122

BLAST of Lag0019753.1 vs. NCBI nr
Match: KAG6595525.1 (hypothetical protein SDJN03_12078, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-34
Identity = 92/130 (70.77%), Postives = 101/130 (77.69%), Query Frame = 0

Query: 1   MATLVFSAIDTGRAARHLLQTAPPNLPGLPSLPKPTALPPLPPLPTMPNPTTGLGIPPIP 60
           MATLVFSAIDTGRAARHLLQ A P++PGLPS         LPPLP++PNPT G GIP IP
Sbjct: 12  MATLVFSAIDTGRAARHLLQIASPSVPGLPS---------LPPLPSLPNPTIGSGIPSIP 71

Query: 61  NLPQPTLPTTQPSLPKLPPLPSFPGNIPTGVALPPLPTTSLPNLPPVSTIPTMFPSIPFL 120
           +LPQPTLPTTQPSLPKLPP P+FP NIPTG+ALPPLPTT LPNL          PSIP L
Sbjct: 72  SLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNL----------PSIPSL 122

Query: 121 SPPPATTSSP 131
           +PPP T+SSP
Sbjct: 132 TPPPTTSSSP 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904304.11.3e-3980.15RNA-binding protein 12-like [Benincasa hispida][more]
XP_023518060.12.3e-3976.92proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo][more]
XP_023518061.12.2e-3775.94protein PELPK1-like [Cucurbita pepo subsp. pepo][more]
KAG7027509.11.0e-3471.54hypothetical protein SDJN02_11523, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6595525.12.9e-3470.77hypothetical protein SDJN03_12078, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..91
NoneNo IPR availablePANTHERPTHR33088:SF33PROTEIN APP1-LIKEcoord: 56..128
coord: 2..51
IPR044659Protein PELPK-likePANTHERPTHR33088MUCIN-2coord: 56..128
coord: 2..51

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0019753Lag0019753gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0019753.1.exon1Lag0019753.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0019753.1cds.Lag0019753.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0019753.1Lag0019753.1-proteinpolypeptide