Lag0015620.1 (mRNA) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTGAAGAAGTAGAAGAGGAAAATGATGGATTAGAGGAGAAACTTCAACCCAAGAGGAAGAGAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAACAGATCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAAGCCAGCAGACCGATCATCCAAGAAGATCATCAAGCCAACAGGTCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCTCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAATAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGATCGATCATCTGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAA ATGGTTGAAGAAGTAGAAGAGGAAAATGATGGATTAGAGGAGAAACTTCAACCCAAGAGGAAGAGAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAACAGATCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAAGCCAGCAGACCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAATAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGATCGATCATCTGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAA ATGGTTGAAGAAGTAGAAGAGGAAAATGATGGATTAGAGGAGAAACTTCAACCCAAGAGGAAGAGAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAACAGATCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAAGCCAGCAGACCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAATAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGATCGATCATCTGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAA MVEEVEEENDGLEEKLQPKRKRSQPTDQEDQQVNRPIIQEDQQANKPIRQIIKPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQTDHPRRSTSQQIDHPRRSTSQQADHPRRSTSHNMSIQEIIKPADRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSKKINKPTGRSSKKINKSQHVDPRDH Homology
BLAST of Lag0015620.1 vs. NCBI nr
Match: KAE8284803.1 (hypothetical protein D5F01_LYC16241 [Larimichthys crocea]) HSP 1 Score: 60.1 bits (144), Expect = 3.3e-05 Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 0
BLAST of Lag0015620.1 vs. NCBI nr
Match: XP_013864908.1 (PREDICTED: serine/arginine-rich splicing factor 4-like isoform X6 [Austrofundulus limnaeus]) HSP 1 Score: 58.9 bits (141), Expect = 7.3e-05 Identity = 58/188 (30.85%), Postives = 96/188 (51.06%), Query Frame = 0
BLAST of Lag0015620.1 vs. NCBI nr
Match: XP_013864910.1 (PREDICTED: serine/arginine-rich splicing factor 4-like isoform X8 [Austrofundulus limnaeus]) HSP 1 Score: 55.8 bits (133), Expect = 6.1e-04 Identity = 58/186 (31.18%), Postives = 92/186 (49.46%), Query Frame = 0
BLAST of Lag0015620.1 vs. ExPASy TrEMBL
Match: A0A6G0I0G4 (Uncharacterized protein OS=Larimichthys crocea OX=215358 GN=D5F01_LYC16241 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05 Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 0
BLAST of Lag0015620.1 vs. ExPASy TrEMBL
Match: A0A2I4BB16 (serine/arginine-rich splicing factor 4-like isoform X6 OS=Austrofundulus limnaeus OX=52670 GN=LOC106518253 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 3.5e-05 Identity = 58/188 (30.85%), Postives = 96/188 (51.06%), Query Frame = 0
BLAST of Lag0015620.1 vs. ExPASy TrEMBL
Match: A0A2I4BB01 (serine/arginine-rich splicing factor 4-like isoform X8 OS=Austrofundulus limnaeus OX=52670 GN=LOC106518253 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 3.0e-04 Identity = 58/186 (31.18%), Postives = 92/186 (49.46%), Query Frame = 0
BLAST of Lag0015620.1 vs. ExPASy TrEMBL
Match: A0A1B6DSP5 (Uncharacterized protein OS=Clastoptera arizonana OX=38151 GN=g.6898 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 8.7e-04 Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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