Lag0015620 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015620
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionserine/arginine-rich splicing factor 4-like isoform X6
Locationchr12: 17831265 .. 17832094 (-)
RNA-Seq ExpressionLag0015620
SyntenyLag0015620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAAGAAGTAGAAGAGGAAAATGATGGATTAGAGGAGAAACTTCAACCCAAGAGGAAGAGAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAACAGATCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAAGCCAGCAGACCGATCATCCAAGAAGATCATCAAGCCAACAGGTCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCTCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAATAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGATCGATCATCTGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAA

mRNA sequence

ATGGTTGAAGAAGTAGAAGAGGAAAATGATGGATTAGAGGAGAAACTTCAACCCAAGAGGAAGAGAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAACAGATCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAAGCCAGCAGACCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAATAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGATCGATCATCTGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAA

Coding sequence (CDS)

ATGGTTGAAGAAGTAGAAGAGGAAAATGATGGATTAGAGGAGAAACTTCAACCCAAGAGGAAGAGAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAACAGATCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAAGCCAGCAGACCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAATAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGATCGATCATCTGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAA

Protein sequence

MVEEVEEENDGLEEKLQPKRKRSQPTDQEDQQVNRPIIQEDQQANKPIRQIIKPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQTDHPRRSTSQQIDHPRRSTSQQADHPRRSTSHNMSIQEIIKPADRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSKKINKPTGRSSKKINKSQHVDPRDH
Homology
BLAST of Lag0015620 vs. NCBI nr
Match: KAE8284803.1 (hypothetical protein D5F01_LYC16241 [Larimichthys crocea])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-05
Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 0

Query: 56  DRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDH-------QTDHPRR 115
           D  RRS  +Q DH RRS  +Q DH RRS  +Q DH RRS  +Q DH       Q DH RR
Sbjct: 98  DHYRRSAGRQRDHYRRSAGRQRDHYRRSAGRQRDHYRRSAGRQRDHYRRSAGRQRDHYRR 157

Query: 116 STSQQIDHPRRSTSQQADHPRRSTSHN 136
           S  +Q DH RRS  +Q DH RRS   +
Sbjct: 158 SAGRQRDHYRRSAGRQRDHYRRSAGRH 184

BLAST of Lag0015620 vs. NCBI nr
Match: XP_013864908.1 (PREDICTED: serine/arginine-rich splicing factor 4-like isoform X6 [Austrofundulus limnaeus])

HSP 1 Score: 58.9 bits (141), Expect = 7.3e-05
Identity = 58/188 (30.85%), Postives = 96/188 (51.06%), Query Frame = 0

Query: 53  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DH 112
           + + RSR  TS+  DH  RS S+  DH  RS S+  DH  RS S+  DH +       DH
Sbjct: 100 RSVSRSRDHTSRSRDHASRSVSRSRDHASRSVSRSRDHASRSVSRSRDHASRSVSRSRDH 159

Query: 113 PRRSTSQQIDHPRRSTSQQADHPRRSTSHNM--SIQEIIKPADRSSKKIIKPTGRSSKKI 172
             RS S+  DH  RS S+  DH  RS S +   + + +    D +S+ +     RS    
Sbjct: 160 ASRSVSRSRDHASRSVSRSRDHASRSVSRSRDHASRSVSMFRDHASRSV----SRSRDHA 219

Query: 173 NKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKIN 232
           ++SV RS + S   +++S D S + +++    +S+ +++  D S + ++ S D +S  ++
Sbjct: 220 SRSVSRSRDHSPRSVSRSRDHSPRSVSRSRDHASRSVSRSRDHSPRSLSSSRDHASWFLS 279

BLAST of Lag0015620 vs. NCBI nr
Match: XP_013864910.1 (PREDICTED: serine/arginine-rich splicing factor 4-like isoform X8 [Austrofundulus limnaeus])

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-04
Identity = 58/186 (31.18%), Postives = 92/186 (49.46%), Query Frame = 0

Query: 53  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DH 112
           + + RSR  TS+  DH  RS S+  DH  RS S+  DH  RS S+  DH +       DH
Sbjct: 100 RSVSRSRDHTSRSRDHASRSVSRSRDHASRSVSRSRDHASRSVSRSRDHASRSVSRSRDH 159

Query: 113 PRRSTSQQIDHPRRSTSQQADHPRRSTSHNMSIQEIIKPADRSSKKIIKPTGRSSKKINK 172
             RS S+  DH  RS S+  DH  RS S            D +S+ +     RS    ++
Sbjct: 160 ASRSVSRSRDHASRSVSRSRDHASRSVS---------MFRDHASRSV----SRSRDHASR 219

Query: 173 SVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKS 232
           SV RS + S   +++S D S + +++    +S+ +++  D S + ++ S D +S  ++ S
Sbjct: 220 SVSRSRDHSPRSVSRSRDHSPRSVSRSRDHASRSVSRSRDHSPRSLSSSRDHASWFLSSS 272

BLAST of Lag0015620 vs. ExPASy TrEMBL
Match: A0A6G0I0G4 (Uncharacterized protein OS=Larimichthys crocea OX=215358 GN=D5F01_LYC16241 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 0

Query: 56  DRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDH-------QTDHPRR 115
           D  RRS  +Q DH RRS  +Q DH RRS  +Q DH RRS  +Q DH       Q DH RR
Sbjct: 98  DHYRRSAGRQRDHYRRSAGRQRDHYRRSAGRQRDHYRRSAGRQRDHYRRSAGRQRDHYRR 157

Query: 116 STSQQIDHPRRSTSQQADHPRRSTSHN 136
           S  +Q DH RRS  +Q DH RRS   +
Sbjct: 158 SAGRQRDHYRRSAGRQRDHYRRSAGRH 184

BLAST of Lag0015620 vs. ExPASy TrEMBL
Match: A0A2I4BB16 (serine/arginine-rich splicing factor 4-like isoform X6 OS=Austrofundulus limnaeus OX=52670 GN=LOC106518253 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-05
Identity = 58/188 (30.85%), Postives = 96/188 (51.06%), Query Frame = 0

Query: 53  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DH 112
           + + RSR  TS+  DH  RS S+  DH  RS S+  DH  RS S+  DH +       DH
Sbjct: 100 RSVSRSRDHTSRSRDHASRSVSRSRDHASRSVSRSRDHASRSVSRSRDHASRSVSRSRDH 159

Query: 113 PRRSTSQQIDHPRRSTSQQADHPRRSTSHNM--SIQEIIKPADRSSKKIIKPTGRSSKKI 172
             RS S+  DH  RS S+  DH  RS S +   + + +    D +S+ +     RS    
Sbjct: 160 ASRSVSRSRDHASRSVSRSRDHASRSVSRSRDHASRSVSMFRDHASRSV----SRSRDHA 219

Query: 173 NKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKIN 232
           ++SV RS + S   +++S D S + +++    +S+ +++  D S + ++ S D +S  ++
Sbjct: 220 SRSVSRSRDHSPRSVSRSRDHSPRSVSRSRDHASRSVSRSRDHSPRSLSSSRDHASWFLS 279

BLAST of Lag0015620 vs. ExPASy TrEMBL
Match: A0A2I4BB01 (serine/arginine-rich splicing factor 4-like isoform X8 OS=Austrofundulus limnaeus OX=52670 GN=LOC106518253 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-04
Identity = 58/186 (31.18%), Postives = 92/186 (49.46%), Query Frame = 0

Query: 53  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DH 112
           + + RSR  TS+  DH  RS S+  DH  RS S+  DH  RS S+  DH +       DH
Sbjct: 100 RSVSRSRDHTSRSRDHASRSVSRSRDHASRSVSRSRDHASRSVSRSRDHASRSVSRSRDH 159

Query: 113 PRRSTSQQIDHPRRSTSQQADHPRRSTSHNMSIQEIIKPADRSSKKIIKPTGRSSKKINK 172
             RS S+  DH  RS S+  DH  RS S            D +S+ +     RS    ++
Sbjct: 160 ASRSVSRSRDHASRSVSRSRDHASRSVS---------MFRDHASRSV----SRSRDHASR 219

Query: 173 SVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKS 232
           SV RS + S   +++S D S + +++    +S+ +++  D S + ++ S D +S  ++ S
Sbjct: 220 SVSRSRDHSPRSVSRSRDHSPRSVSRSRDHASRSVSRSRDHSPRSLSSSRDHASWFLSSS 272

BLAST of Lag0015620 vs. ExPASy TrEMBL
Match: A0A1B6DSP5 (Uncharacterized protein OS=Clastoptera arizonana OX=38151 GN=g.6898 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.7e-04
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 0

Query: 119 RSTSQQADHPRRSTSHNMSIQEIIKPADRSSKKIIKPTGRSSKKINKSVDRSSNR----- 178
           + T+ QA   +     N + ++  K  D ++KKI K     +KK+NK  D  + +     
Sbjct: 194 KKTNNQASEKKVGRQENANNKKTNKQEDENNKKINKQEDDKNKKVNKQEDDKNKKVNKLE 253

Query: 179 --SSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSK 238
              ++K NK  D  +KK+NK     +KK+NK  D  +KK NK  D+ ++K+NK  D  +K
Sbjct: 254 DDKNKKANKQEDDKNKKVNKQEDDKNKKVNKLEDDKNKKANKQDDK-NKKVNKQEDDKNK 313

Query: 239 KINKPTGRSSKKINKSQH 250
           K+NK     +KK NK +H
Sbjct: 314 KVNKLEDDKNKKANKQEH 330

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8284803.13.3e-0549.43hypothetical protein D5F01_LYC16241 [Larimichthys crocea][more]
XP_013864908.17.3e-0530.85PREDICTED: serine/arginine-rich splicing factor 4-like isoform X6 [Austrofundulu... [more]
XP_013864910.16.1e-0431.18PREDICTED: serine/arginine-rich splicing factor 4-like isoform X8 [Austrofundulu... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6G0I0G41.6e-0549.43Uncharacterized protein OS=Larimichthys crocea OX=215358 GN=D5F01_LYC16241 PE=4 ... [more]
A0A2I4BB163.5e-0530.85serine/arginine-rich splicing factor 4-like isoform X6 OS=Austrofundulus limnaeu... [more]
A0A2I4BB013.0e-0431.18serine/arginine-rich splicing factor 4-like isoform X8 OS=Austrofundulus limnaeu... [more]
A0A1B6DSP58.7e-0433.33Uncharacterized protein OS=Clastoptera arizonana OX=38151 GN=g.6898 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..234

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015620.1Lag0015620.1mRNA