Lag0015514.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0015514.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein
Locationchr12: 14932529 .. 14935137 (+)
Sequence length1047
RNA-Seq ExpressionLag0015514.1
SyntenyLag0015514.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATGCAAATGGTATCATCCACTTTGAAAGCCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGTTTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGACAACATGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGTACAAAGTGACGATCCTAAAAAGGCAATATGATGCCATTGTCGAAATGATGGGTCCCACCTGCAGTGGTTTGGGTGGAATGATGAGCGAAAGTGCATTGAGGCAGAGAAATCAGTCTTTGATGATTGGGTCAAGGTAAAAATTCGAACATGATCCACATAGAATTCAAAAATGTTATATGATTATATACGTTAATTGTGTTAACATGTTGAATATAGGTCTTATAAAAAAAAACATGTTTAATATAGGTACACTCACATGCTCGAGGGATGAGAAACAAGTCATTCCCCTACGCTTTAACGACCTAGCAATTGTGTTTGGGAAGGATAGGGCTAATGAAGGTGTTTTGACTTCAAAAGAAGTGGCTACCGATCTGGATAAGTGTGCTGCATGTGTATCCTGGGAAGGCAGCTGTAACGGACAACTTTTTTTAAAAAAAAAAAAACTAAAAAAAGGGGAGTGGGCTTAATTGCCCGGTCAAAGGGAGACTGGGGGGAAATTTTCCCCCCATATTTTCGGTCAAAGGGAGTTTAAAAAAAAAAAAATCAGATCTCTCCCTCTCCCTTCACGCTCTCTCTCCCTCCCCGATACTCTCTCTCTCTCCCTCGCACGCTCTCAGTTTTCCTCCGCCGCCGCCGCCGCAGCTCCTCCGCCGCTGCCGCCGACCTCCGCACTTGCTGTTCGCCACGCCGCCCCTGCGCATCGCCGGTATTCTCTCTCTCTCTCTATCTCTCTCTCTTTCTCTCTCTCTCATTCGGCTCTCTCTCCTTCTCCTCACCACAGCCCGCCGCTCGCCTCCCGTCGCCGTGAACTGCCGCAGCCGTTGTGTCCAGATCTGTTTGTTCTTCGTCGCTCGGATCTGATTACCGCCGTCACTGCCTTAAGACAAATAGCCACACGTCTCTTGTGCGTTCGACGATTTCAGTTAGTGGGTAAGTGAGAATTAAGGTGTTTTGGGTCTATTTAATGTTTAATCATGGATGCCCATTGAGTTTAGCTTCCGATTTCAAGGTGCCCGTGGTGTTTGGAGGCCGAATTATCGAATTTGAGCGATTTGGGACTGTTGGACAGCAAGCTGTGGTTCTGTTTGGGTAAGCTTTGGTTGTTAATTTTACCCCAAATGTAATGGGTTCTTAGTTGAATGCTTGGTTAGAGTCCATAGTTAATTAAGAGTTCATTTCCTTGTTGTAGGTTGCTTAAAAACCTTGGAGTTAAGGAATTTCTTGGAGGTTAATCAAGTTCCTTCACTAAGTAAGTAGCCCCTTTGGAATAAATTCTGTGTTTTAAAACTCATTTAAGTTGGGTATGACTTATAATAGCATGAGTTGGTTTTAATCCCTGAGTTGCCTTAGCCTGAAATGTTTATGCATTGAGATGACTGTTTGCTCCTAGCATGTATATTAAATATTTGGATTGAGGTTAAGGTGTCATGTATACGGTTGCCTTCAGGAATATGGATGTTGTGTGCTTGTGCTATGTAATGGGTGGAAAGTGTTGGACTGTTATACATTATGTGTTGTCTGGTATTGTTAGTGAACGGCGAGGAGTTGTGTTTTATCTCTGTTTAGGAGTGTTGTTGCCGCCTTCGTTTCTTGTTCTTGAGGTTGTTGGAGTTGTGAATGGTTTGTGTATGCGAGGTCTGACTCGTTATGGTTATAGGAGTGTATATTCTTATTTTCAGGTGCAAGGAAAAATTTTGGGTTCCCTCTGCGTGTGCCGTTATGCTGCCGAATTTTCAGTAGCTTCATGACGGCTTGGGAATCATATTTACCTTGAGGGAAAGGATTAGGAAAGAGAAAGGAATAGGCTAGTGCCTTAGTCGAGGGTCGTGTCAATTAAACACCTAGGACTAAGATGTAATAGACTGAAATGAGGGGCTTAATGGGCGGGACTTGGCTTCGCAGTCTAGGTGCCATTTACTAACTGTGGAAGTAAATTCCTGACTTAAACCCATGAACGCCCCACCAGTGAAATGGTAGCTTAGAGCGCTATGCGCCCATTAGTGCCTTGAGAGATGAGACTTAGCTCCTCTGACTGGGTGCCATCTACCATCAGTAGGAGTAGAGACCTCCCAAAACTCCCACATGTGCACTATCAATGAGTTGGCAAACTTATATATATATACAGGTGTACTAATTGAACACGAGACCCGAACTGCAGATAAATGAAATGAAATGAAATGAAATGAGATTGAGATGACCTAACCCTTAGACCCTTAACTCGAATAAGATATTAAAGCTTTTATTGCTGCAAGTGTCTTGAAGTTTGGCTACTTACTGAGTATTTTCTTAAATACTCATTCTTTTCCCTTACATACAACTGCAGGTAGAGGTAAAGGTGTACAGCACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAG

mRNA sequence

ATGTTAATGCAAATGGTATCATCCACTTTGAAAGCCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGTTTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGACAACATGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGTACAAAGTGACGATCCTAAAAAGGCAATATGATGCCATTGTCGAAATGATGGGTCCCACCTGCAGTGGTTTGGGTGGAATGATGAGCGAAAGTGCATTGAGGCAGAGAAATCAGTCTTTGATGATTGGGTCAAGGGCTAATGAAGGTGTTTTGACTTCAAAAGAAGTGGCTACCGATCTGGATAAGTGTGCTGCATGTTTTTCCTCCGCCGCCGCCGCCGCAGCTCCTCCGCCGCTGCCGCCGACCTCCGCACTTGCTGTTCGCCACGCCGCCCCTGCGCATCGCCGCCCGCCGCTCGCCTCCCGTCGCCGTGAACTGCCGCAGCCGTTGTGTCCAGATCTGTTTGTTCTTCGTCGCTCGGATCTGATTACCGCCGTCACTGCCTTAAGACAAATAGCCACACGTCTCTTGTGCGTTCGACGATTTCAGTTAGTGGCTTCCGATTTCAAGGTGCCCGTGGTGTTTGGAGGCCGAATTATCGAATTTGAGCGATTTGGGACTGTTGGACAGCAAGCTGTGGTTCTGTTTGGGAATATGGATGTTGTGTGCTTGTGCTATGTAATGGGTGGAAAGTGTTGGACTGTTATACATTATGTGTTGTCTGGTATTGTTAGTGAACGGCGAGGAGTTGTGTTTTATCTCTGTTTAGGAGTGTTGTTGCCGCCTTCGTTTCTTGTTCTTGAGGTTGTTGGAGTTGTGAATGGTTTGTGTATGCGAGGTCTGACTCGTTATGGTTATAGGAGTGTATATTCTTATTTTCAGGTAGAGGTAAAGGTGTACAGCACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAG

Coding sequence (CDS)

ATGTTAATGCAAATGGTATCATCCACTTTGAAAGCCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGTTTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGACAACATGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGTACAAAGTGACGATCCTAAAAAGGCAATATGATGCCATTGTCGAAATGATGGGTCCCACCTGCAGTGGTTTGGGTGGAATGATGAGCGAAAGTGCATTGAGGCAGAGAAATCAGTCTTTGATGATTGGGTCAAGGGCTAATGAAGGTGTTTTGACTTCAAAAGAAGTGGCTACCGATCTGGATAAGTGTGCTGCATGTTTTTCCTCCGCCGCCGCCGCCGCAGCTCCTCCGCCGCTGCCGCCGACCTCCGCACTTGCTGTTCGCCACGCCGCCCCTGCGCATCGCCGCCCGCCGCTCGCCTCCCGTCGCCGTGAACTGCCGCAGCCGTTGTGTCCAGATCTGTTTGTTCTTCGTCGCTCGGATCTGATTACCGCCGTCACTGCCTTAAGACAAATAGCCACACGTCTCTTGTGCGTTCGACGATTTCAGTTAGTGGCTTCCGATTTCAAGGTGCCCGTGGTGTTTGGAGGCCGAATTATCGAATTTGAGCGATTTGGGACTGTTGGACAGCAAGCTGTGGTTCTGTTTGGGAATATGGATGTTGTGTGCTTGTGCTATGTAATGGGTGGAAAGTGTTGGACTGTTATACATTATGTGTTGTCTGGTATTGTTAGTGAACGGCGAGGAGTTGTGTTTTATCTCTGTTTAGGAGTGTTGTTGCCGCCTTCGTTTCTTGTTCTTGAGGTTGTTGGAGTTGTGAATGGTTTGTGTATGCGAGGTCTGACTCGTTATGGTTATAGGAGTGTATATTCTTATTTTCAGGTAGAGGTAAAGGTGTACAGCACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAG

Protein sequence

MLMQMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLGGMMSESALRQRNQSLMIGSRANEGVLTSKEVATDLDKCAACFSSAAAAAAPPPLPPTSALAVRHAAPAHRRPPLASRRRELPQPLCPDLFVLRRSDLITAVTALRQIATRLLCVRRFQLVASDFKVPVVFGGRIIEFERFGTVGQQAVVLFGNMDVVCLCYVMGGKCWTVIHYVLSGIVSERRGVVFYLCLGVLLPPSFLVLEVVGVVNGLCMRGLTRYGYRSVYSYFQVEVKVYSTRDGELLSHGSPLG
Homology
[Close]
BLAST of Lag0015514.1 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-23
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 5  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRC 64
          M S+  KA KH WT + DEVLV+CLLQLV+ GGW+ADN TF+ GYL QV KLMKEK+   
Sbjct: 1  MASTNSKATKHRWTTI-DEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGS 60

Query: 65 DIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG 99
          +IQVTP L+ +V ILK+QY AI EMMGP CSG G
Sbjct: 61 NIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFG 93

[Close]
BLAST of Lag0015514.1 vs. NCBI nr
Match: KAA0041970.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-23
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 11  KARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTP 70
           +A KH WT +E+E LV+CLLQLV+ GGW+ DN TF+SGYL QV KLMKEK+P  +IQVTP
Sbjct: 223 EANKHQWTTIENEALVECLLQLVEEGGWRVDNGTFKSGYLVQVQKLMKEKIPESNIQVTP 282

Query: 71  TLEYKVTILKRQYDAIVEMMGPTCSGLG 99
            LE +V ILK+QY  I +MMGP C+  G
Sbjct: 283 NLESRVKILKKQYTVIAKMMGPACNEFG 310

[Close]
BLAST of Lag0015514.1 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-22
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 4   QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPR 63
           QM S   K  KH WT +EDE LV+CLLQLV+ G W+ DN TF+ GYL QV KLMKEK+  
Sbjct: 85  QMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILE 144

Query: 64  CDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG 97
            +IQVTP LE  V ILK+QY  I EMMGP CSG
Sbjct: 145 SNIQVTPNLESGVKILKKQYTTIAEMMGPVCSG 177

[Close]
BLAST of Lag0015514.1 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-22
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 4   QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPR 63
           QM S   K  KH WT +EDE LV+CLLQLV+ G W+ DN TF+ GYL QV KLMKEK+  
Sbjct: 85  QMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILE 144

Query: 64  CDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG 97
            +IQVTP LE  V ILK+QY  I EMMGP CSG
Sbjct: 145 SNIQVTPNLESGVKILKKQYTTIAEMMGPVCSG 177

[Close]
BLAST of Lag0015514.1 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-22
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 0 

Query: 5  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRC 64
          M S+  KA KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR 
Sbjct: 1  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 65 DIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG 99
          +IQVT  LE +V  LK+QY AI +MMGP CS  G
Sbjct: 61 NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFG 94

[Close]
BLAST of Lag0015514.1 vs. ExPASy TrEMBL
Match: A0A5A7TF70 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001930 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 11  KARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTP 70
           +A KH WT +E+E LV+CLLQLV+ GGW+ DN TF+SGYL QV KLMKEK+P  +IQVTP
Sbjct: 223 EANKHQWTTIENEALVECLLQLVEEGGWRVDNGTFKSGYLVQVQKLMKEKIPESNIQVTP 282

Query: 71  TLEYKVTILKRQYDAIVEMMGPTCSGLG 99
            LE +V ILK+QY  I +MMGP C+  G
Sbjct: 283 NLESRVKILKKQYTVIAKMMGPACNEFG 310

[Close]
BLAST of Lag0015514.1 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 5  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRC 64
          M S+  KA KH WT + DEVLV+CLLQLV+ GGW+ADN TF+ GYL QV KLMKEK+   
Sbjct: 1  MASTNSKATKHRWTTI-DEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGS 60

Query: 65 DIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG 99
          +IQVTP L+ +V ILK+QY AI EMMGP CSG G
Sbjct: 61 NIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFG 93

[Close]
BLAST of Lag0015514.1 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.7e-23
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 4   QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPR 63
           QM S   K  KH WT +EDE LV+CLLQLV+ G W+ DN TF+ GYL QV KLMKEK+  
Sbjct: 85  QMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILE 144

Query: 64  CDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG 97
            +IQVTP LE  V ILK+QY  I EMMGP CSG
Sbjct: 145 SNIQVTPNLESGVKILKKQYTTIAEMMGPVCSG 177

[Close]
BLAST of Lag0015514.1 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.7e-23
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 4   QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPR 63
           QM S   K  KH WT +EDE LV+CLLQLV+ G W+ DN TF+ GYL QV KLMKEK+  
Sbjct: 85  QMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILE 144

Query: 64  CDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG 97
            +IQVTP LE  V ILK+QY  I EMMGP CSG
Sbjct: 145 SNIQVTPNLESGVKILKKQYTTIAEMMGPVCSG 177

[Close]
BLAST of Lag0015514.1 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.7e-23
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 0 

Query: 5  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRC 64
          M S+  KA KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR 
Sbjct: 1  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 65 DIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG 99
          +IQVT  LE +V  LK+QY AI +MMGP CS  G
Sbjct: 61 NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFG 94

The following BLAST results are available for this feature:
BLAST of Lag0015514.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050106.12.8e-2364.89retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041970.12.8e-2362.50putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nucleas... [more]
KAA0033487.11.4e-2262.37uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa][more]
TYK26842.11.4e-2262.37uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa][more]
TYJ96933.11.8e-2259.57retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Lag0015514.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0015514.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TF701.3e-2362.50Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7U7F71.3e-2364.89Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SW626.7e-2362.37Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DTL06.7e-2362.37Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3BC958.7e-2359.57Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Lag0015514.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 10..98
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 10..98

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0015514Lag0015514gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0015514.1.exon1Lag0015514.1.exon1exon
Lag0015514.1.exon2Lag0015514.1.exon2exon
Lag0015514.1.exon3Lag0015514.1.exon3exon
Lag0015514.1.exon4Lag0015514.1.exon4exon
Lag0015514.1.exon5Lag0015514.1.exon5exon
Lag0015514.1.exon6Lag0015514.1.exon6exon
Lag0015514.1.exon7Lag0015514.1.exon7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0015514.1cds.Lag0015514.1CDS
cds.Lag0015514.1cds.Lag0015514.1_2CDS
cds.Lag0015514.1cds.Lag0015514.1_3CDS
cds.Lag0015514.1cds.Lag0015514.1_4CDS
cds.Lag0015514.1cds.Lag0015514.1_5CDS
cds.Lag0015514.1cds.Lag0015514.1_6CDS
cds.Lag0015514.1cds.Lag0015514.1_7CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0015514.1Lag0015514.1-proteinpolypeptide