Lag0013151.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0013151.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 47886913 .. 47888856 (+)
Sequence length456
RNA-Seq ExpressionLag0013151.1
SyntenyLag0013151.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGAACACCATCAAATTCCAAGAGAATGCTTGAAGGAGACTGAAGGTTGTGGTTATTGCTAATGTTTTCGTTTTCATGATCACTTGTTGCTGTCACTTGCTCTTTTCATTATATTTATTAAATTTTGTTTTAATTCCTTCCATTATTTTTGTCATCATGATCATGAATTTTATTGTTAAGTATCTGTTGCCACCCTACCTTTTGATGGGAGGCTTGGGATGCTTTCCCCTTCTCTTTTAATACACTGGAGCTGAAAAGTTGTGCTTTCCTGTGTAACATTTGAGCCATTTCGAAGTGTATACATAACACTAATAAGAATGTTGGAATACCTTTTGATCCATTGTTAGATTCTTTCTCACTCTTCATCACTTAGAGACTTGAAAGTAGAAACTAGCTTTGCTTAGACACACACTCTGTTGAAATCTCCTATTTTATGGCCTCTAGTCTCTCCTGGTCTCTTCCTTGTTGCCATGGAAGATGAATTAGAAGTTGTTGAAGGTGATCCTTATGAAGGTAGGCTTTAGTTACATTAGCGATCAGGAATGTTAGGTAAAAGTGAATGAAGCTGAGGAACGTCGCGTCCTACTCGTCGAGTATGACGTTATCGGCTTATATCATCCATTTGAGAGGGGGAGGAAGAAAAGGTGTATTAGCTAGCTATCTTGGTTGAAAGTTGGTGTTGTGATGCATCCTTTGGGAAATACATTATGAAAATGAAGATGTGGGATTGAGGGAGATTTGTTATAGTTGGGATATGGTGGGAGAAGTTAGCCAATGAGATTTCTGACAAGATGGTGTCAGAGGCTCCACATATCATCCTTCTTTTAGTTTTGGTTTTGTAATGGAAACACTGACAATGCTTGATGTCTATAGAGTGTACTGTTTTTCCCCATGGGAATGAAACACACAGAAAGGCACAGCCAACACAGGAGGATATTAATTATCTCCAAAAGTCAGAGACTCTAACTTCAGTGTTAAGATTCCATCAATGCCTTCTCCATCTCCACTCCTAAGTGGACTGCTTTCTCTTGTGTTTTTAACTACTCAACATTAACAAAGGGGAAGATAACATTGATTACCCTTCTTTAAAATATATTTTTCATATTAAGAAAAAAATTTTAGTGGATAGTTGTAACCAAAAAAAAAAAACTGTTTTCTTTTAATTTTTTTCCTTTATAGGTTGGGTTCAGCTCTGTTTTTGTTCTATCAGTTGTCAATCTATCATTTAAGTTAACTCATGCTTGTAATCATGTAACCTTAAATTTATTAGAAATCTATGTGTATCATATGAAACAAAGAGCTAATTTATATTTAATATCGATGAACATGGTAATGTTAAAAGTTCATTTAATTCTGAGGCTAGGAAAAATGTATATTAAAATATTCAATGAACTTATTTAACTAGATTCTTTATAATAAAAATTAGAAAAGGAGTGAATATTAAGATATCAATATTGTTTTATTATGTTTATTAACAACACAATCAACAAAGTTCAATTCTTCATTTCCCGAGCTTAGATCTTTTCTATCATTAATTGTATGTTTACCCAAAAAGAAAAAAAACGTTATTTTTATTTTTATTTTTTTAATCATTTTCGCTGACCGGTCATAATAAGCCTTTAATTAATAAACGTTTAAATACTCTTGATAATGGGCCGGGCCTAGTACAGACGTTGGGCCTGTCTTTGATCCATCACTTTAGAAAGGCGCGCGAAAAAGTTCGATTTAAATTTTGACGAGGCTAAACGTACCTGTCCGTGACGATTGGGAAGAAGAACCCGCAACCGCAGATCAGAGTTGAACAGAGATGCTCCGTCGTGGTCATCATTTCTCCGTCCTCGCCGTCAAATTCTGAAGTGCTGAGAATGAAGCTATTCTTCTCCGATGCCAGACGGAAGGGAGTAACAGTTGTAGCCTCAGTTTCCGATGGTTCTGTTTGA

mRNA sequence

ATGCAAGAACACCATCAAATTCCAAGAGAATGCTTGAAGGAGACTGAAGTCTCTCCTGGTCTCTTCCTTGTTGCCATGGAAGATGAATTAGAAGTTGTTGAAGGTGATCCTTATGAAGAGTGTACTGTTTTTCCCCATGGGAATGAAACACACAGAAAGGCACAGCCAACACAGGAGGATATTAATTATCTCCAAAAGTCAGAGACTCTAACTTCAGTTGGGTTCAGCTCTGTTTTTGTTCTATCAGTTGTCAATCTATCATTTAAGTTAACTCATGCTTGTAATCATAAGAACCCGCAACCGCAGATCAGAGTTGAACAGAGATGCTCCGTCGTGGTCATCATTTCTCCGTCCTCGCCGTCAAATTCTGAAGTGCTGAGAATGAAGCTATTCTTCTCCGATGCCAGACGGAAGGGAGTAACAGTTGTAGCCTCAGTTTCCGATGGTTCTGTTTGA

Coding sequence (CDS)

ATGCAAGAACACCATCAAATTCCAAGAGAATGCTTGAAGGAGACTGAAGTCTCTCCTGGTCTCTTCCTTGTTGCCATGGAAGATGAATTAGAAGTTGTTGAAGGTGATCCTTATGAAGAGTGTACTGTTTTTCCCCATGGGAATGAAACACACAGAAAGGCACAGCCAACACAGGAGGATATTAATTATCTCCAAAAGTCAGAGACTCTAACTTCAGTTGGGTTCAGCTCTGTTTTTGTTCTATCAGTTGTCAATCTATCATTTAAGTTAACTCATGCTTGTAATCATAAGAACCCGCAACCGCAGATCAGAGTTGAACAGAGATGCTCCGTCGTGGTCATCATTTCTCCGTCCTCGCCGTCAAATTCTGAAGTGCTGAGAATGAAGCTATTCTTCTCCGATGCCAGACGGAAGGGAGTAACAGTTGTAGCCTCAGTTTCCGATGGTTCTGTTTGA

Protein sequence

MQEHHQIPRECLKETEVSPGLFLVAMEDELEVVEGDPYEECTVFPHGNETHRKAQPTQEDINYLQKSETLTSVGFSSVFVLSVVNLSFKLTHACNHKNPQPQIRVEQRCSVVVIISPSSPSNSEVLRMKLFFSDARRKGVTVVASVSDGSV
Homology
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BLAST of Lag0013151.1 vs. NCBI nr
Match: KAG7026939.1 (hypothetical protein SDJN02_10947, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.9 bits (141), Expect = 4.3e-05
Identity = 33/51 (64.71%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 97  KNPQPQIRVEQRCSVVVIISPSSPSNSEVLRMKLFFSDARRKGVTVVASVS 148
           K  Q  IRV +RCSV+VIISPSSPSN EV RMK F S    K  TV+ASVS
Sbjct: 5   KKKQQSIRVNRRCSVMVIISPSSPSNFEVQRMKRFSSVVEWKEATVLASVS 55

The following BLAST results are available for this feature:
BLAST of Lag0013151.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026939.14.3e-0564.71hypothetical protein SDJN02_10947, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Lag0013151.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0013151Lag0013151gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0013151.1.exon1Lag0013151.1.exon1exon
Lag0013151.1.exon2Lag0013151.1.exon2exon
Lag0013151.1.exon3Lag0013151.1.exon3exon
Lag0013151.1.exon4Lag0013151.1.exon4exon
Lag0013151.1.exon5Lag0013151.1.exon5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0013151.1cds.Lag0013151.1CDS
cds.Lag0013151.1cds.Lag0013151.1_2CDS
cds.Lag0013151.1cds.Lag0013151.1_3CDS
cds.Lag0013151.1cds.Lag0013151.1_4CDS
cds.Lag0013151.1cds.Lag0013151.1_5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0013151.1Lag0013151.1-proteinpolypeptide