Lag0007248.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007248.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	ScvUqRz_1244_HRSCAF_2115: 44480 .. 45229 (-)
Sequence length	750
RNA-Seq Expression	Lag0007248.1
Synteny	Lag0007248.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCATTCTGACGTTACGGCAGGGCAACGTACGTGCTTCGGGCAGAACCGTAAAATCCCCCCCGGTTTGCAAGACAATTTGGTTTTGACTAATGAATTCCGGCACCCGGTCACGACGTCAATCGAGCGCGTCATCTTTAACCTTTCGGAACTGGCGGGGTACTGGGCACATATGATGAGAAAGGGCACCGGGGCTCCTTTCGTGATAATGCCGGATGGCAGAGAGGGCAAGATGGTCTTGGAGTATGTCCGATGGTGGCATCAACTGACGTTTTCTGACTTCTCGCAAGGAATCAACAAGCTGTTGACATTCAAAGAGCAGCAACTCCCTGATCAAGAAAGAGTTGGGAGTCGAAGTCCTCCTTCTCCTGAACCCACATATGGACCCATTCCCGAGCAGGGGCAGCCACCCAGATCATCGCAACATCGGAAAGGTCACCAGCCCAGCCTTACGAAAAAGGGGCAAACCCGGACCATGAAAGGAAAGGGAGGTTCAGCACCCGTCAGCCAGCATGCATCCCCCATCAGGGAGGAAAGAAGAAGTCCCATCATTTCTTCAGCACCGTTCTCGGCTCAACGGATGGTGACTCGAAGTATGAGGGCCCGCCAAACTCAACCGGCTCGCTCACATCTGCGTTCAAGAGTCGTAAGCCGAAACGGCAGCATCAGAGTTTACAGCTTCAGCTCCACCGGCTACACAGGAATCGCCAGCATCACGAGCACCATCTGCAGCACTCAAGGCACCTGA

mRNA sequence

ATGCGGCATTCTGACGTTACGGCAGGGCAACGTACGTGCTTCGGGCAGAACCGTAAAATCCCCCCCGGTTTGCAAGACAATTTGGTTTTGACTAATGAATTCCGGCACCCGGTCACGACGTCAATCGAGCGCGTCATCTTTAACCTTTCGGAACTGGCGGGGTACTGGGCACATATGATGAGAAAGGGCACCGGGGCTCCTTTCGTGATAATGCCGGATGGCAGAGAGGGCAAGATGGTCTTGGAGTATGTCCGATGGTGGCATCAACTGACGTTTTCTGACTTCTCGCAAGGAATCAACAAGCTGTTGACATTCAAAGAGCAGCAACTCCCTGATCAAGAAAGAGTTGGGAGTCGAAGTCCTCCTTCTCCTGAACCCACATATGGACCCATTCCCGAGCAGGGGCAGCCACCCAGATCATCGCAACATCGGAAAGGTCACCAGCCCAGCCTTACGAAAAAGGGGCAAACCCGGACCATGAAAGGAAAGGGAGGTTCAGCACCCGTCAGCCAGCATGCATCCCCCATCAGGGAGGAAAGAAGAAGTCCCATCATTTCTTCAGCACCGTTCTCGGCTCAACGGATGGTGACTCGAAGTATGAGGGCCCGCCAAACTCAACCGGCTCGCTCACATCTGCGTTCAAGAGTCGTAAGCCGAAACGGCAGCATCAGAGTTTACAGCTTCAGCTCCACCGGCTACACAGGAATCGCCAGCATCACGAGCACCATCTGCAGCACTCAAGGCACCTGA

Coding sequence (CDS)

ATGCGGCATTCTGACGTTACGGCAGGGCAACGTACGTGCTTCGGGCAGAACCGTAAAATCCCCCCCGGTTTGCAAGACAATTTGGTTTTGACTAATGAATTCCGGCACCCGGTCACGACGTCAATCGAGCGCGTCATCTTTAACCTTTCGGAACTGGCGGGGTACTGGGCACATATGATGAGAAAGGGCACCGGGGCTCCTTTCGTGATAATGCCGGATGGCAGAGAGGGCAAGATGGTCTTGGAGTATGTCCGATGGTGGCATCAACTGACGTTTTCTGACTTCTCGCAAGGAATCAACAAGCTGTTGACATTCAAAGAGCAGCAACTCCCTGATCAAGAAAGAGTTGGGAGTCGAAGTCCTCCTTCTCCTGAACCCACATATGGACCCATTCCCGAGCAGGGGCAGCCACCCAGATCATCGCAACATCGGAAAGGTCACCAGCCCAGCCTTACGAAAAAGGGGCAAACCCGGACCATGAAAGGAAAGGGAGGTTCAGCACCCGTCAGCCAGCATGCATCCCCCATCAGGGAGGAAAGAAGAAGTCCCATCATTTCTTCAGCACCGTTCTCGGCTCAACGGATGGTGACTCGAAGTATGAGGGCCCGCCAAACTCAACCGGCTCGCTCACATCTGCGTTCAAGAGTCGTAAGCCGAAACGGCAGCATCAGAGTTTACAGCTTCAGCTCCACCGGCTACACAGGAATCGCCAGCATCACGAGCACCATCTGCAGCACTCAAGGCACCTGA

Protein sequence

MRHSDVTAGQRTCFGQNRKIPPGLQDNLVLTNEFRHPVTTSIERVIFNLSELAGYWAHMMRKGTGAPFVIMPDGREGKMVLEYVRWWHQLTFSDFSQGINKLLTFKEQQLPDQERVGSRSPPSPEPTYGPIPEQGQPPRSSQHRKGHQPSLTKKGQTRTMKGKGGSAPVSQHASPIREERRSPIISSAPFSAQRMVTRSMRARQTQPARSHLRSRVVSRNGSIRVYSFSSTGYTGIASITSTICSTQGT

Homology

[Close]

BLAST of Lag0007248.1 vs. NCBI nr
Match: EEF27291.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-38
Identity = 96/120 (80.00%), Postives = 100/120 (83.33%), Query Frame = 0


Query: 88  HQLTFSDFSQGINKLLTFKEQQLPDQERVGSRSPPSPEPTYGPIPEQGQPPRSSQHRKGH 147
           HQLTFS FSQGINKLLTFKEQQLPDQERV SRSPP PEPTYG IPEQ QP RSSQHRKGH
Sbjct: 6   HQLTFSYFSQGINKLLTFKEQQLPDQERVESRSPPPPEPTYGLIPEQRQPSRSSQHRKGH 65

Query: 148 QPSLTKKGQTRTMKGKGGSAPVSQHASPIREERRSPIISSAPFSAQRMVTRSMRARQTQP 207
           QP   ++ QTRTMK KGGSAPVSQHA  IREERRSPIISSAP SAQRMVTR+     + P
Sbjct: 66  QP---RQKQTRTMKVKGGSAPVSQHAFSIREERRSPIISSAPSSAQRMVTRTSEFTASAP 122

[Close]

BLAST of Lag0007248.1 vs. NCBI nr
Match: EEF44036.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 159.5 bits (402), Expect = 3.9e-35
Identity = 99/136 (72.79%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 82  EYVRW-W------HQLTFSDFSQGINKLLTFKEQQLPDQERVGSRSPPSPEPTYGPIPEQ 141
           E  RW W      HQLTFS FSQGINKLLTFKEQQL DQERV SRSPP PEPTYG IPEQ
Sbjct: 3   ERARWSWSMSDGGHQLTFSYFSQGINKLLTFKEQQLLDQERVESRSPPPPEPTYGLIPEQ 62

Query: 142 GQPPRSSQHRKGHQPSLTKKGQTRTMKGKGGSAPVSQHASPIREERRSPIISSAPFSAQR 201
            QP  SSQH+KGHQP   ++ QTRTMK KGGSAPVSQHA  I+EERR+ IISS+P SAQR
Sbjct: 63  RQPSISSQHQKGHQP---RQKQTRTMKVKGGSAPVSQHAFSIKEERRT-IISSSPSSAQR 122

Query: 202 MVTRSMRARQTQPARS 211
           MVTRSM ARQT    S
Sbjct: 123 MVTRSMWARQTNSTGS 134

[Close]

BLAST of Lag0007248.1 vs. NCBI nr
Match: CAN64513.1 (hypothetical protein VITISV_004352 [Vitis vinifera])

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-17
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 99  INKLLTFKEQQLPDQERVGSRSPPSPEPTYGPIPEQGQPPRSSQHRKGHQPS 151
           +++LLTFKEQQLPDQERVGSRSPP PEPTYGPIPEQGQPPRSSQHRKGHQP+
Sbjct: 187 VDQLLTFKEQQLPDQERVGSRSPPPPEPTYGPIPEQGQPPRSSQHRKGHQPA 238

[Close]

BLAST of Lag0007248.1 vs. NCBI nr
Match: EEF23948.1 (conserved hypothetical protein, partial [Ricinus communis])

HSP 1 Score: 92.4 bits (228), Expect = 5.8e-15
Identity = 48/54 (88.89%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 88  HQLTFSDFSQGINKLLTFKEQQLPDQERVGSRSPPSPEPTYGPIPEQGQPPRSS 142
           HQLTFS FSQGINKLLTFKEQQLPDQERV SRSPP PEPTYG IPEQ QP RSS
Sbjct: 6   HQLTFSYFSQGINKLLTFKEQQLPDQERVESRSPPPPEPTYGLIPEQRQPSRSS 59

[Close]

BLAST of Lag0007248.1 vs. ExPASy TrEMBL
Match: B9TA22 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2094780 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 96/120 (80.00%), Postives = 100/120 (83.33%), Query Frame = 0


Query: 88  HQLTFSDFSQGINKLLTFKEQQLPDQERVGSRSPPSPEPTYGPIPEQGQPPRSSQHRKGH 147
           HQLTFS FSQGINKLLTFKEQQLPDQERV SRSPP PEPTYG IPEQ QP RSSQHRKGH
Sbjct: 6   HQLTFSYFSQGINKLLTFKEQQLPDQERVESRSPPPPEPTYGLIPEQRQPSRSSQHRKGH 65

Query: 148 QPSLTKKGQTRTMKGKGGSAPVSQHASPIREERRSPIISSAPFSAQRMVTRSMRARQTQP 207
           QP   ++ QTRTMK KGGSAPVSQHA  IREERRSPIISSAP SAQRMVTR+     + P
Sbjct: 66  QP---RQKQTRTMKVKGGSAPVSQHAFSIREERRSPIISSAPSSAQRMVTRTSEFTASAP 122

[Close]

BLAST of Lag0007248.1 vs. ExPASy TrEMBL
Match: B9RX07 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0815280 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.9e-35
Identity = 99/136 (72.79%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 82  EYVRW-W------HQLTFSDFSQGINKLLTFKEQQLPDQERVGSRSPPSPEPTYGPIPEQ 141
           E  RW W      HQLTFS FSQGINKLLTFKEQQL DQERV SRSPP PEPTYG IPEQ
Sbjct: 3   ERARWSWSMSDGGHQLTFSYFSQGINKLLTFKEQQLLDQERVESRSPPPPEPTYGLIPEQ 62

Query: 142 GQPPRSSQHRKGHQPSLTKKGQTRTMKGKGGSAPVSQHASPIREERRSPIISSAPFSAQR 201
            QP  SSQH+KGHQP   ++ QTRTMK KGGSAPVSQHA  I+EERR+ IISS+P SAQR
Sbjct: 63  RQPSISSQHQKGHQP---RQKQTRTMKVKGGSAPVSQHAFSIKEERRT-IISSSPSSAQR 122

Query: 202 MVTRSMRARQTQPARS 211
           MVTRSM ARQT    S
Sbjct: 123 MVTRSMWARQTNSTGS 134

[Close]

BLAST of Lag0007248.1 vs. ExPASy TrEMBL
Match: A5AFS6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004352 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 99  INKLLTFKEQQLPDQERVGSRSPPSPEPTYGPIPEQGQPPRSSQHRKGHQPS 151
           +++LLTFKEQQLPDQERVGSRSPP PEPTYGPIPEQGQPPRSSQHRKGHQP+
Sbjct: 187 VDQLLTFKEQQLPDQERVGSRSPPPPEPTYGPIPEQGQPPRSSQHRKGHQPA 238

[Close]

BLAST of Lag0007248.1 vs. ExPASy TrEMBL
Match: B9TJL5 (Uncharacterized protein (Fragment) OS=Ricinus communis OX=3988 GN=RCOM_1990360 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-15
Identity = 48/54 (88.89%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 88  HQLTFSDFSQGINKLLTFKEQQLPDQERVGSRSPPSPEPTYGPIPEQGQPPRSS 142
           HQLTFS FSQGINKLLTFKEQQLPDQERV SRSPP PEPTYG IPEQ QP RSS
Sbjct: 6   HQLTFSYFSQGINKLLTFKEQQLPDQERVESRSPPPPEPTYGLIPEQRQPSRSS 59

The following BLAST results are available for this feature:

BLAST of Lag0007248.1 vs. NCBI nr


Match Name	E-value	Identity	Description
EEF27291.1	2.9e-38	80.00	conserved hypothetical protein [Ricinus communis]	[more]
EEF44036.1	3.9e-35	72.79	conserved hypothetical protein [Ricinus communis]	[more]
CAN64513.1	4.7e-17	90.38	hypothetical protein VITISV_004352 [Vitis vinifera]	[more]
EEF23948.1	5.8e-15	88.89	conserved hypothetical protein, partial [Ricinus communis]	[more]

BLAST of Lag0007248.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0007248.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B9TA22	1.4e-38	80.00	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2094780 PE=4 SV=1	[more]
B9RX07	1.9e-35	72.79	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0815280 PE=4 SV=1	[more]
A5AFS6	2.3e-17	90.38	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004352 PE=4 SV=1	[more]
B9TJL5	2.8e-15	88.89	Uncharacterized protein (Fragment) OS=Ricinus communis OX=3988 GN=RCOM_1990360 P...	[more]

BLAST of Lag0007248.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..188
None	No IPR available	PANTHER	PTHR34456:SF12	MITOVIRUS RNA-DEPENDENT RNA POLYMERASE	coord: 87..208
IPR008686	RNA-dependent RNA polymerase, mitoviral	PANTHER	PTHR34456	FAMILY NOT NAMED	coord: 87..208

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0007248	Lag0007248	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0007248.1.exon1	Lag0007248.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0007248.1	cds.Lag0007248.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0007248.1	Lag0007248.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion