Lag0002623.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002623.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	zinc finger protein GIS3-like
Location	chr4: 44320326 .. 44320838 (-)
Sequence length	513
RNA-Seq Expression	Lag0002623.1
Synteny	Lag0002623.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAATCAAAACCCCTCCTCCATTCTAAAGCTGTTCGGGTTCCCACTGGTCGAACACGACGACCTTCCGACGGAGACGCCCGACGGCAGCGGCGCCGACCCCAACTCCGACGACGACAGGAAGTTCCGGTGCCAATTCTGCCGCCGTGTTTTCGCCAACTCGCAGGCCCTCGGCGGCCACCAGAATGCGCACAAGAGAGAGCGCCAAAGGGCCAAACGCGCCCTTTATTTCCACGCCTCCGACCACCGCTTCGCCGCCGCACTCCGACCGGCGCCGCTTTACTCCAGCGTTTTCTCGGGCAACATTGGCGGCGGCGGTGGTTCTAGATTTCTGCCTCGGAGCGGTAACGGCTACTTTGCGGCGGCGTACGGCGGCGTATCGGCGGCTTCAGGGCGGTGGATGTTTGGGAATTCGGGTGAAGGGTGTAAATTGGGAGGTGAAAAGGGATCATCAACAGATCATGTGGGTGTTGTTGATCTTCATCTTAAACTTTCTCCATCTGGTTCATGA

mRNA sequence

ATGTCCAATCAAAACCCCTCCTCCATTCTAAAGCTGTTCGGGTTCCCACTGGTCGAACACGACGACCTTCCGACGGAGACGCCCGACGGCAGCGGCGCCGACCCCAACTCCGACGACGACAGGAAGTTCCGGTGCCAATTCTGCCGCCGTGTTTTCGCCAACTCGCAGGCCCTCGGCGGCCACCAGAATGCGCACAAGAGAGAGCGCCAAAGGGCCAAACGCGCCCTTTATTTCCACGCCTCCGACCACCGCTTCGCCGCCGCACTCCGACCGGCGCCGCTTTACTCCAGCGTTTTCTCGGGCAACATTGGCGGCGGCGGTGGTTCTAGATTTCTGCCTCGGAGCGGTAACGGCTACTTTGCGGCGGCGTACGGCGGCGTATCGGCGGCTTCAGGGCGGTGGATGTTTGGGAATTCGGGTGAAGGGTGTAAATTGGGAGGTGAAAAGGGATCATCAACAGATCATGTGGGTGTTGTTGATCTTCATCTTAAACTTTCTCCATCTGGTTCATGA

Coding sequence (CDS)

ATGTCCAATCAAAACCCCTCCTCCATTCTAAAGCTGTTCGGGTTCCCACTGGTCGAACACGACGACCTTCCGACGGAGACGCCCGACGGCAGCGGCGCCGACCCCAACTCCGACGACGACAGGAAGTTCCGGTGCCAATTCTGCCGCCGTGTTTTCGCCAACTCGCAGGCCCTCGGCGGCCACCAGAATGCGCACAAGAGAGAGCGCCAAAGGGCCAAACGCGCCCTTTATTTCCACGCCTCCGACCACCGCTTCGCCGCCGCACTCCGACCGGCGCCGCTTTACTCCAGCGTTTTCTCGGGCAACATTGGCGGCGGCGGTGGTTCTAGATTTCTGCCTCGGAGCGGTAACGGCTACTTTGCGGCGGCGTACGGCGGCGTATCGGCGGCTTCAGGGCGGTGGATGTTTGGGAATTCGGGTGAAGGGTGTAAATTGGGAGGTGAAAAGGGATCATCAACAGATCATGTGGGTGTTGTTGATCTTCATCTTAAACTTTCTCCATCTGGTTCATGA

Protein sequence

MSNQNPSSILKLFGFPLVEHDDLPTETPDGSGADPNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHASDHRFAAALRPAPLYSSVFSGNIGGGGGSRFLPRSGNGYFAAAYGGVSAASGRWMFGNSGEGCKLGGEKGSSTDHVGVVDLHLKLSPSGS

Homology

[Close]

BLAST of Lag0002623.1 vs. NCBI nr
Match: XP_023514545.1 (zinc finger protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.3 bits (682), Expect = 9.0e-68
Identity = 143/173 (82.66%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPTETPDGSGA-DPNSDDDRKFRCQFCRRVFANSQALG 60
           MSNQNPSSILKLFG PLVEHDDLP  TPDG G  D NSD DRKFRCQFC RVFANSQALG
Sbjct: 1   MSNQNPSSILKLFGVPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60

Query: 61  GHQNAHKRERQRAKRALYFHASDHRFAAALRPAPLYSSVFSGNIGGGGGS---RFLPRSG 120
           GHQNAHKRERQRAKRALYFHASDH  AAALRP P YSSVF  NIGGGGG    RF+PRS 
Sbjct: 61  GHQNAHKRERQRAKRALYFHASDHHLAAALRPLPFYSSVFPANIGGGGGHRGYRFVPRSD 120

Query: 121 NGYFAAAYGGVSAASGRWMFGNSGEGCKLGGEKGSSTDHVGVVDLHLKLSPSG 170
           NGYF AAYGGVS  SGRWMFGNSGE    GGEKG STD VGVVDLHLKLSPSG
Sbjct: 121 NGYFTAAYGGVSVGSGRWMFGNSGE----GGEKG-STDDVGVVDLHLKLSPSG 168

[Close]

BLAST of Lag0002623.1 vs. NCBI nr
Match: XP_023004876.1 (zinc finger protein GIS3-like [Cucurbita maxima])

HSP 1 Score: 265.0 bits (676), Expect = 4.4e-67
Identity = 142/173 (82.08%), Postives = 145/173 (83.82%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPTETPDGSGA-DPNSDDDRKFRCQFCRRVFANSQALG 60
           MSNQNPS+ILKLFGFPLVEHDDLP  TPDG G  D NSD DRKFRCQFC RVFANSQALG
Sbjct: 1   MSNQNPSTILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60

Query: 61  GHQNAHKRERQRAKRALYFHASDHRFAAALRPAPLYSSVFSGNIGGGGGS---RFLPRSG 120
           GHQNAHKRERQRAKRALYFHASDH  AAALRP P YSSVF  +IGGGGG    RFLPRS 
Sbjct: 61  GHQNAHKRERQRAKRALYFHASDHHLAAALRPPPFYSSVFPAHIGGGGGHRGYRFLPRSD 120

Query: 121 NGYFAAAYGGVSAASGRWMFGNSGEGCKLGGEKGSSTDHVGVVDLHLKLSPSG 170
           +GYF AAYGGVSA SGRWMFGNSGE    GGEKG STD V VVDLHLKLSPSG
Sbjct: 121 HGYFTAAYGGVSAGSGRWMFGNSGE----GGEKG-STDDVDVVDLHLKLSPSG 168

[Close]

BLAST of Lag0002623.1 vs. NCBI nr
Match: KAG7025578.1 (Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.7 bits (670), Expect = 2.2e-66
Identity = 145/178 (81.46%), Postives = 145/178 (81.46%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPTETPDGSGA-DPNSDDDRKFRCQFCRRVFANSQALG 60
           MSNQNPSSILKLFGFPLVEHDDLP  TPDG G  D NSD DRKFRCQFC RVFANSQALG
Sbjct: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60

Query: 61  GHQNAHKRERQRAKRALYFHASDHRFAA-------ALRPAPLYSSVFSGNIGGG-GGSRF 120
           GHQNAHKRERQRAKRALYFHASDH  AA       ALRP P YSSVF  NIGGG  G RF
Sbjct: 61  GHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANIGGGHRGYRF 120

Query: 121 LPRSGNGYFAAAYGGVSAASGRWMFGNSGEGCKLGGEKGSSTDHVGVVDLHLKLSPSG 170
           LPRS NGYF AAYGGVSA SGRWMFGNSGE    GGEKG STD VGVVDLHLKLSPSG
Sbjct: 121 LPRSENGYFTAAYGGVSAGSGRWMFGNSGE----GGEKG-STDDVGVVDLHLKLSPSG 173

[Close]

BLAST of Lag0002623.1 vs. NCBI nr
Match: XP_008451655.1 (PREDICTED: zinc finger protein 6-like [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 1.4e-60
Identity = 141/185 (76.22%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPTETPD--GSGADP--NSDDDRKFRCQFCRRVFANSQ 60
           MSN NPSSILKLFGFPLVEHDD P ETPD  G GAD   NSDDDRKFRCQFCRRVFANSQ
Sbjct: 1   MSNHNPSSILKLFGFPLVEHDDNPPETPDGVGGGADTTINSDDDRKFRCQFCRRVFANSQ 60

Query: 61  ALGGHQNAHKRERQRAKRALYFHASDHRFAAALRPAPLYSSVFSGNI---GGGGGSRFLP 120
           ALGGHQNAHKRERQRAKRALYFH      AAALRP  LYSSVF  N    GGGGGSR LP
Sbjct: 61  ALGGHQNAHKRERQRAKRALYFH------AAALRPPSLYSSVFPSNFGGDGGGGGSRILP 120

Query: 121 RSGNGYFA--AAYGGVSAASGRWMFGNSGE------GCKLGGEKGSSTDHVGVVDLHLKL 171
           R+GNGYFA  AAYGGVSA+SGRWMFGNS E      GCKLGGEKG        VDLHLKL
Sbjct: 121 RNGNGYFAETAAYGGVSASSGRWMFGNSSEGKMENSGCKLGGEKGL------CVDLHLKL 173

[Close]

BLAST of Lag0002623.1 vs. NCBI nr
Match: KAA0046676.1 (zinc finger protein 6-like [Cucumis melo var. makuwa] >TYK18211.1 zinc finger protein 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-60
Identity = 141/188 (75.00%), Postives = 143/188 (76.06%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPTETPD--GSGADP--NSDDDRKFRCQFCRRVFANSQ 60
           MSN NPSSILKLFGFPLVEHDD P ETPD  G GAD   NSDDDRKFRCQFCRRVFANSQ
Sbjct: 1   MSNHNPSSILKLFGFPLVEHDDNPPETPDGVGGGADTTINSDDDRKFRCQFCRRVFANSQ 60

Query: 61  ALGGHQNAHKRERQRAKRALYFHASDHRFAAALRPAPLYSSVFSGNI------GGGGGSR 120
           ALGGHQNAHKRERQRAKRALYFH      AAALRP  LYSSVF  N       GGGGGSR
Sbjct: 61  ALGGHQNAHKRERQRAKRALYFH------AAALRPPSLYSSVFPSNFGGDGGGGGGGGSR 120

Query: 121 FLPRSGNGYFA--AAYGGVSAASGRWMFGNSGE------GCKLGGEKGSSTDHVGVVDLH 171
            LPR+GNGYFA  AAYGGVSA+SGRWMFGNS E      GCKLGGEKG        VDLH
Sbjct: 121 ILPRNGNGYFAETAAYGGVSASSGRWMFGNSSEGKMENSGCKLGGEKGL------CVDLH 176

[Close]

BLAST of Lag0002623.1 vs. ExPASy Swiss-Prot
Match: Q39265 (Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 7   SSILKLFGFPLVEHDDLPTETPDGSGADPNSDDDRKFRCQFCRRVFANSQALGGHQNAHK 66
           +S LKLFG  L+E   +  ++ +      +  + RK+ CQ+C R FANSQALGGHQNAHK
Sbjct: 5   TSSLKLFGINLLETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHK 64

Query: 67  RERQRAKRALY-----------FHASDHRFAAALRPAP 94
           +ERQ  KRA             FH   +   +A  P P
Sbjct: 65  KERQLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLP 102

[Close]

BLAST of Lag0002623.1 vs. ExPASy Swiss-Prot
Match: Q9FG05 (Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-09
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 10  LKLFGFPL-VEHDDLPTETPDGSGADPNSDD--DRKFRCQFCRRVFANSQALGGHQNAHK 69
           ++LFGF     H++  ++       +   DD  +++F+C +C R F  SQALGGHQNAHK
Sbjct: 19  IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 70  RERQRAKR-------ALYFHASDHRFAAA 89
           RERQ+ KR       A +FH   +  AA+
Sbjct: 79  RERQQTKRFNLHSNAAAFFHRQQNHIAAS 107

[Close]

BLAST of Lag0002623.1 vs. ExPASy Swiss-Prot
Match: Q39264 (Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-08
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 2  SNQNPSSILKLFGFPLVEHDDLPTETPDGSGADPNSDDD----RKFRCQFCRRVFANSQA 61
          S  +    +KLFGF L+     P  T   S +   +       ++  CQ+C + FANSQA
Sbjct: 15 SGSSSDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQA 74

Query: 62 LGGHQNAHKRERQRAKR 75
          LGGHQNAHK+ER + KR
Sbjct: 75 LGGHQNAHKKERLKKKR 91

[Close]

BLAST of Lag0002623.1 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.3e-08
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 39  DDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYF---------------HASDH 98
           D R F C +C+R F +SQALGGHQNAHKRER  AKR  Y+               H S  
Sbjct: 64  DPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVS 123

[Close]

BLAST of Lag0002623.1 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 35/93 (37.63%), Postives = 43/93 (46.24%), Query Frame = 0


Query: 17 LVEHDDLPTETPDGSGADPNSDDD--------------------------------RKFR 76
          + E DD   ETP   G + +S+ D                                R F 
Sbjct: 1  MTESDDASRETPASRGGEASSNQDLSKPESNHVSLDLKLNDTFNDDTKSTKCEANPRVFS 60

Query: 77 CQFCRRVFANSQALGGHQNAHKRERQRAKRALY 78
          C +CRR F +SQALGGHQNAHKRER  AKRA++
Sbjct: 61 CNYCRRKFYSSQALGGHQNAHKRERTMAKRAMH 93

The following BLAST results are available for this feature:

BLAST of Lag0002623.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514545.1	9.0e-68	82.66	zinc finger protein 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004876.1	4.4e-67	82.08	zinc finger protein GIS3-like [Cucurbita maxima]	[more]
KAG7025578.1	2.2e-66	81.46	Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008451655.1	1.4e-60	76.22	PREDICTED: zinc finger protein 6-like [Cucumis melo]	[more]
KAA0046676.1	3.1e-60	75.00	zinc finger protein 6-like [Cucumis melo var. makuwa] >TYK18211.1 zinc finger pr...	[more]

BLAST of Lag0002623.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39265	1.2e-11	40.82	Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1	[more]
Q9FG05	7.5e-09	39.33	Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1	[more]
Q39264	2.8e-08	41.56	Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1	[more]
Q42485	6.3e-08	46.67	Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1	[more]
Q39266	1.4e-07	37.63	Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 33..86 e-value: 8.8E-6 score: 27.4
None	No IPR available	PANTHER	PTHR46353:SF11	ZINC FINGER PROTEIN 6-LIKE	coord: 1..170
IPR044299	Zinc finger protein GIS3/ZFP5/ZFP6	PANTHER	PTHR46353	ZINC FINGER PROTEIN 5	coord: 1..170
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 45..65
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 43..70 score: 11.447647
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 40..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0002623	Lag0002623	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0002623.1.exon1	Lag0002623.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0002623.1	cds.Lag0002623.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0002623.1	Lag0002623.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0009736	cytokinin-activated signaling pathway
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding