Lag0002498.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002498.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	tRNA pseudouridine synthase
Location	chr4: 43359156 .. 43362622 (-)
Sequence length	1233
RNA-Seq Expression	Lag0002498.1
Synteny	Lag0002498.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGAAAACCAGAAGCATAGGCTAGAATACAGTTCCGACTCATCACCTCAAAGGCCGTTGAAAATTGGAAAGATCACGGACGAAGTTCTCGGCAGCGACACGGAGGAAGCAGAAGCCATGAACCGTAAACCTGGAATCCAACGCTATCTAGTTGCAGTCGAGTATATAGGAACTCGTTTTTCAGGGTCTCAGAAGCAGCCCAATTGCCGTACGGTGGTTGGCGTGCTGGAGGTACTTGCCAATTTTTCTCTACACTGCATATCTTTCTTATCAAAGATGTTTTGAGAATTTGTTACCCAAGGACTCGGAAGATGAACTTTTCCAAGTTATATAGTTCCTTTTTTAAAATAATCATTGGCGATGAATATGAAATATCTAGACTGGTATGTTGCATCAAGTAACATTTATGAAGAATCTTTATTGTTTGACACTTTGTATCAGTTCCAAGTTACGGTAATGCCATTGACTTAAGTCCAAGTTCTATTTTTGCCTTTATCTTCATTAAAACCATTTGAAAAGTAAGATTTGTTTTTGAACAATGGATCTCCTGCGTTACACTGTGTGGTTCGTTTCATTCAAAATGATTACTTTACATTTGTCAGGAAGCGTTTCAGAAATTCATCGGTCAATCAGTTCCAGTGTTTTGTTCTAGCAGAACAGTAAGTGTACTTCTGGATATTGGTTCCTTTTTGCCATATATAAATCAATTTTGTTGTTGTTATTAATTTGTTATGTGTACTCATAGGATAATATTAAACCAGATGAGAAACTTAAATTGAAAAGTATTTTGGAGACCTATATCTCCCAAGGTTCCACGACTTTTATCTTGTTGATTCAGATTCTTCAGTGCTCTGGTAGTTTTCTTCCACTAGGTTTGATGTGTGAAGAGAGAAAGATATGTAATTGTAACTGATAGTGATAGTTTGACTATTGGCTTGCCGCTGGTAAAATTCTTGGACTTGTGTTGATTTGAGGTATATGGTCTTACCTTTCCAAATCGATTTTTAAAACAAATCCATTGAATTTTTTTAGGATAAGTTGTTCGTCTAGCTTGTTTGTAGCAGACTGCAGTGCATCTTGCATCATATTCGTCTGTTCTGAAGCATGCATGGTAGAAGGGGATCCATGATTGAACTGCTTTTTTGGTTGTATTGATTGCTTAGCAAAAGAAAATACAATTTTTATCTACTCGAAATTTATGGACCAACCTTATTCTTATAAATTGTTTTAGAAAAAATCTGCACTTTCTGGCATTTTCTGTGAATTATGCATCTTCTAGTTTTGTTGTGAAGACCAAGTATTTTCTTGTGCAACTATAACGCTTGGATTTTTTTTCTTTTGCTTTCTATGAGCTCTTTGACTCTTTGTATCATTGTCATCCATGTTTCCATGCACTTTATTACTTTTCTTGCTAACATATGTATGTCAGGTAATTCCGTACATGTTATGACTTTCATTCTTTTTTCAACCAAGGATGCTGGAGTCCATGCCTTATCAAATGTTTGTCATGTTGATGTTGAGCGCATAAGCAAAAGAAAGCCTGGAGAAGTGGTTTGTCCCTTTATAATAGAATACCAGTATCCCTCTCTCCTCTCAATATGTACACAACTAGATGGGTGAACTTTATCTAAAAACATTAGTTCACTCATTGACTTTAGTGTCCTTAGAAATGCTACTTAACTTTGCCACAAGGATGCTAACTTTCCAACTATCATGCAGTTAACTCCACATGAACCGCAAGTCGTTCGTAGGGCTGTGAATCATTTCTTACAGGTTTGGTTTCCCTCAGACCAATCACTTTTTTGAGCTACTGCTGCTCTCAATTTCCCACGCTTTGATCGGTTGATTCATTTGCTAATAAACATAGCTCAATTATGTATACTCGACCAAGAGATTGAATCCCCCCACTCCACATATTATTAAAAAAAAACTGTTGCTTCATTTTAAAGTGAACAAGGTTACATGCAATAGTCTTGTTAAAATTGCATTTTTTCAAAAAAAAAAAAAATGTCTGGTTAAAATTGCCTTTTTCCAGTTTATAAATTTTATCTTCCTTTCTAAATTTGCAAGAACCTTAGAACTGTGCTAAGGAGAGTTCTTCCCTTTTACCATTACTATTGTTCAGGGGTTACAGATAAGCGAGCACCTTAAGAGAAAACTCCACTTTTTCCAGCTGGAGCCGTTGTTTTTTTTTCTGTAACAAAGAAAATGAGGAAACTTATCTGTGTTGGTTTTGATTTCAGAAACAGGAAGGTGATGTTACGGTAGTTGATGTTCGAAGTGTTCCTAATGATTTTCATGCTAGATATAAAGCTCAAGAGCGTACGTGAGTATCATCTATCAGTGCAGTAGTAGTTGATACTGTTGTCATATAATAGATAGTAGAATTGGTTATAAAGGTCATACTAGAGCGATTTGAATGTGATGGGTGTTAGAATAATTTTTTGTAGCTCGTGAAATATTTTCAGCTACTTTTATCGGTTAGTTTCTGGTCCAGAAACTTTGTCAAGTTTTGAGAAGGATCGGGCATGGCACGTGCCCGAGACATTGAATATTGAGGCGATGCAGGTATGAACAAATAGCGATGCAATGCTGGACATCATGTAGTTTTCTAATTACATTCTGGAAACTGATGCAACATTATTGGTATGTTTGAATTCAGGGGGCATGCAAAGTGCTTGTTGGGCATCATGATTTTAGTTCCTTCAGGGCAGCTGGTTGTCAGGTCGTTTAATACTAAAATTATTCATGTTCTCTCTGGTTTTTATTCAATAGGCAGGTTATTATACATTTTGTTTGTAATGGAAGCTAGGGCTAGAGCATAGGGTTTCGTGTAATGTACATAAATTAGTTTAGACGTGCAGTGCAGGCAAACTCGCCAATCAGAACTCTGGATGAACTAGACGTTTGTGAGGTGGTTTCAACGCCTTATTTTCCAACAGAAATGGAGCGAAAACAAAGGCAAGGTAAAGAAGAAACCAGGAACGAAGTGCCACATTCTGAAACATGTGAGGTTGGATTTGGGATCAGGAGAAGGCATCGTTGTCTTGTGGTGACAGCACGAGCACGCTCTTTTCTCTATCATCAGGTATAGCTTAACAGTAGGAGACTGCTTGTTTTCTTGTTAAGGGGTCTGAGATTGATTGGTCATTGCTCAGGTGAGGCTGATGGTTGGAGTTCTTAAAGCGGTCGGCACCGGAGATCTAACAGTGGGAGATGGTGGGTGATTAGATACCAAGATATGTATAATGATTCATAACAAGAATAGTAATTCTAGTTCTTATTTTTGTTTTTCAAAATGAATAGAACATCGCTGTTGATAATAATTTTGGTATGTGTTATTTGCTGCAGTGGAAAGAATCCTGGAAGCGAAGAATGTGAGTTCAGCAAGTCCGATGGCTCCTGCATGCGGACTCTACCTGGGACATGTCAAATATGATCTACCACCTCCAGAGCCCCACTGA

mRNA sequence

ATGACGGAAAACCAGAAGCATAGGCTAGAATACAGTTCCGACTCATCACCTCAAAGGCCGTTGAAAATTGGAAAGATCACGGACGAAGTTCTCGGCAGCGACACGGAGGAAGCAGAAGCCATGAACCGTAAACCTGGAATCCAACGCTATCTAGTTGCAGTCGAGTATATAGGAACTCGTTTTTCAGGGTCTCAGAAGCAGCCCAATTGCCGTACGGTGGTTGGCGTGCTGGAGGAAGCGTTTCAGAAATTCATCGGTCAATCAGTTCCAGTGTTTTGTTCTAGCAGAACAGATAATATTAAACCAGATGAGAAACTTAAATTGAAAAGTATTTTGGAGACCTATATCTCCCAAGGTTCCACGACTTTTATCTTGTTGATTCAGATTCTTCAGTGCTCTGGTAGTTTTCTTCCACTAGGTAATTCCGTACATGTTATGACTTTCATTCTTTTTTCAACCAAGGATGCTGGAGTCCATGCCTTATCAAATGTTTGTCATGTTGATGTTGAGCGCATAAGCAAAAGAAAGCCTGGAGAAGTGTTAACTCCACATGAACCGCAAGTCGTTCGTAGGGCTGTGAATCATTTCTTACAGAAACAGGAAGGTGATGTTACGGTAGTTGATGTTCGAAGTGTTCCTAATGATTTTCATGCTAGATATAAAGCTCAAGAGCGTACCTACTTTTATCGGTTAGTTTCTGGTCCAGAAACTTTGTCAAGTTTTGAGAAGGATCGGGCATGGCACGTGCCCGAGACATTGAATATTGAGGCGATGCAGGGGGCATGCAAAGTGCTTGTTGGGCATCATGATTTTAGTTCCTTCAGGGCAGCTGGTTGTCAGGCAAACTCGCCAATCAGAACTCTGGATGAACTAGACGTTTGTGAGGTGGTTTCAACGCCTTATTTTCCAACAGAAATGGAGCGAAAACAAAGGCAAGGTAAAGAAGAAACCAGGAACGAAGTGCCACATTCTGAAACATGTGAGGTTGGATTTGGGATCAGGAGAAGGCATCGTTGTCTTGTGGTGACAGCACGAGCACGCTCTTTTCTCTATCATCAGGTGAGGCTGATGGTTGGAGTTCTTAAAGCGGTCGGCACCGGAGATCTAACAGTGGGAGATGTGGAAAGAATCCTGGAAGCGAAGAATGTGAGTTCAGCAAGTCCGATGGCTCCTGCATGCGGACTCTACCTGGGACATGTCAAATATGATCTACCACCTCCAGAGCCCCACTGA

Coding sequence (CDS)

ATGACGGAAAACCAGAAGCATAGGCTAGAATACAGTTCCGACTCATCACCTCAAAGGCCGTTGAAAATTGGAAAGATCACGGACGAAGTTCTCGGCAGCGACACGGAGGAAGCAGAAGCCATGAACCGTAAACCTGGAATCCAACGCTATCTAGTTGCAGTCGAGTATATAGGAACTCGTTTTTCAGGGTCTCAGAAGCAGCCCAATTGCCGTACGGTGGTTGGCGTGCTGGAGGAAGCGTTTCAGAAATTCATCGGTCAATCAGTTCCAGTGTTTTGTTCTAGCAGAACAGATAATATTAAACCAGATGAGAAACTTAAATTGAAAAGTATTTTGGAGACCTATATCTCCCAAGGTTCCACGACTTTTATCTTGTTGATTCAGATTCTTCAGTGCTCTGGTAGTTTTCTTCCACTAGGTAATTCCGTACATGTTATGACTTTCATTCTTTTTTCAACCAAGGATGCTGGAGTCCATGCCTTATCAAATGTTTGTCATGTTGATGTTGAGCGCATAAGCAAAAGAAAGCCTGGAGAAGTGTTAACTCCACATGAACCGCAAGTCGTTCGTAGGGCTGTGAATCATTTCTTACAGAAACAGGAAGGTGATGTTACGGTAGTTGATGTTCGAAGTGTTCCTAATGATTTTCATGCTAGATATAAAGCTCAAGAGCGTACCTACTTTTATCGGTTAGTTTCTGGTCCAGAAACTTTGTCAAGTTTTGAGAAGGATCGGGCATGGCACGTGCCCGAGACATTGAATATTGAGGCGATGCAGGGGGCATGCAAAGTGCTTGTTGGGCATCATGATTTTAGTTCCTTCAGGGCAGCTGGTTGTCAGGCAAACTCGCCAATCAGAACTCTGGATGAACTAGACGTTTGTGAGGTGGTTTCAACGCCTTATTTTCCAACAGAAATGGAGCGAAAACAAAGGCAAGGTAAAGAAGAAACCAGGAACGAAGTGCCACATTCTGAAACATGTGAGGTTGGATTTGGGATCAGGAGAAGGCATCGTTGTCTTGTGGTGACAGCACGAGCACGCTCTTTTCTCTATCATCAGGTGAGGCTGATGGTTGGAGTTCTTAAAGCGGTCGGCACCGGAGATCTAACAGTGGGAGATGTGGAAAGAATCCTGGAAGCGAAGAATGTGAGTTCAGCAAGTCCGATGGCTCCTGCATGCGGACTCTACCTGGGACATGTCAAATATGATCTACCACCTCCAGAGCCCCACTGA

Protein sequence

MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTRFSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGSTTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEVLTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSSFEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTPYFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPEPH

Homology

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BLAST of Lag0002498.1 vs. NCBI nr
Match: XP_023524389.1 (uncharacterized protein LOC111788293 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 622.1 bits (1603), Expect = 3.5e-174
Identity = 319/407 (78.38%), Postives = 330/407 (81.08%), Query Frame = 0


Query: 1   MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTR 60
           MTENQKHRLE+SSDSSPQRPLKIGK T+E L  D EEAE+MNR PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGS 120
           FSGSQ+QPNCRTVVGVLEEAF+KFIGQSV VFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEV 180
                                             DAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 121 ----------------------------------DAGVHALSNVCHVDVERISKRKPGEV 180

Query: 181 LTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSS 240
           L PHEP VVRRAVNHFLQK +GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPETLSS
Sbjct: 181 LPPHEPGVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSS 240

Query: 241 FEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300
           F+KDR WHVPE LNI AMQ ACKVLVGHHDFSSFRAAGCQANSP+RTLDELDVCEVVSTP
Sbjct: 241 FDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTP 300

Query: 301 YFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGV 360
           YFP+ MERKQRQGKEE  NEV HSE+ EVGFGIRRRHRC VVTARARSFLYHQVRLMVGV
Sbjct: 301 YFPSSMERKQRQGKEECENEVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGV 350

Query: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPP 408
           LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPP
Sbjct: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPP 350

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BLAST of Lag0002498.1 vs. NCBI nr
Match: XP_022956590.1 (uncharacterized protein LOC111458281 [Cucurbita moschata])

HSP 1 Score: 621.3 bits (1601), Expect = 5.9e-174
Identity = 319/409 (78.00%), Postives = 330/409 (80.68%), Query Frame = 0


Query: 1   MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTR 60
           MTENQKHRLE+SSDSSPQRPLKIGK T+E L  D EEAE+MNR PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGS 120
           FSGSQ+QPNCRTVVGVLEEAF+KFIGQSV VFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEV 180
                                             DAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 121 ----------------------------------DAGVHALSNVCHVDVERISKRKPGEV 180

Query: 181 LTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSS 240
           L PHEP VVRRAVNHFLQK +GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPETLSS
Sbjct: 181 LPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSS 240

Query: 241 FEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300
           F+KDR WHVPE LNI AMQ ACKVLVGHHDFSSFRAAGCQANSP+RTLDELDVCEVVSTP
Sbjct: 241 FDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTP 300

Query: 301 YFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGV 360
           YFP+ MERKQRQGKEE  N V HSE+ EVGFGIRRRHRC VVTARARSFLYHQVRLMVGV
Sbjct: 301 YFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGV 352

Query: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPEP 410
           LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPP P
Sbjct: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPPP 352

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BLAST of Lag0002498.1 vs. NCBI nr
Match: XP_022998153.1 (uncharacterized protein LOC111492882 [Cucurbita maxima])

HSP 1 Score: 621.3 bits (1601), Expect = 5.9e-174
Identity = 318/409 (77.75%), Postives = 330/409 (80.68%), Query Frame = 0


Query: 1   MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTR 60
           MTENQKHRLE+SSDSSPQRPLKIGK T+E L  D EEAE+MNR PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGS 120
           FSGSQ+QPNCRTVVGVLEEAF+KFIGQSV VFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEV 180
                                             DAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 121 ----------------------------------DAGVHALSNVCHVDVERISKRKPGEV 180

Query: 181 LTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSS 240
           L PHEP VVRRAVNHFLQK +GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPETLSS
Sbjct: 181 LPPHEPGVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSS 240

Query: 241 FEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300
           F+KDR WHVPE LNI AMQ ACKVLVGHHDFSSFRAAGCQANSP+RTLDELDVCEV+STP
Sbjct: 241 FDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVISTP 300

Query: 301 YFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGV 360
           YFP+ MERKQRQGKEE  NEV HSE+ EVGFGIRRRHRC VVTARARSFLYHQVRLMVGV
Sbjct: 301 YFPSSMERKQRQGKEEGENEVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGV 352

Query: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPEP 410
           LK VGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPP P
Sbjct: 361 LKVVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPLP 352

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BLAST of Lag0002498.1 vs. NCBI nr
Match: XP_038877867.1 (tRNA pseudouridine synthase A isoform X2 [Benincasa hispida])

HSP 1 Score: 617.5 bits (1591), Expect = 8.5e-173
Identity = 321/410 (78.29%), Postives = 326/410 (79.51%), Query Frame = 0


Query: 1   MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTR 60
           MTENQKH LE+S DSSPQRPLKIGK TDEVL    EEAE MNR PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLEFSIDSSPQRPLKIGKTTDEVLNRHEEEAETMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGS 120
           FSGSQ+QPNCRTVVG LEEAFQKFIGQ V VFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRT----------------------- 120

Query: 121 TTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEV 180
                                             DAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 121 ----------------------------------DAGVHALSNVCHVDVERISKRKPGEV 180

Query: 181 LTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSS 240
           L PHEP VV RAVNHFLQK EGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPE LSS
Sbjct: 181 LPPHEPGVVHRAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSS 240

Query: 241 FEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300
           FEKDRAWHV ETLNI AMQ ACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP
Sbjct: 241 FEKDRAWHVSETLNIGAMQDACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300

Query: 301 YFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGV 360
           YFPT MERKQRQGKE   +EVPHSETCEVGFGIRRRHRC VVTARARSFLYHQVRLMVGV
Sbjct: 301 YFPTSMERKQRQGKEGD-SEVPHSETCEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGV 351

Query: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPEPH 411
           LKAVGTGDLTVGDVERILEAKNV+SASPMAPACGLYLGHV+YDL PP PH
Sbjct: 361 LKAVGTGDLTVGDVERILEAKNVNSASPMAPACGLYLGHVRYDL-PPAPH 351

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BLAST of Lag0002498.1 vs. NCBI nr
Match: XP_008445970.1 (PREDICTED: tRNA pseudouridine synthase A isoform X1 [Cucumis melo] >KAA0034150.1 tRNA pseudouridine synthase A isoform X1 [Cucumis melo var. makuwa] >TYK15769.1 tRNA pseudouridine synthase A isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 617.5 bits (1591), Expect = 8.5e-173
Identity = 319/410 (77.80%), Postives = 324/410 (79.02%), Query Frame = 0


Query: 1   MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTR 60
           MTENQKH LE S DSS QRPLKIGK TD+V   D EEAE MN KPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLELSIDSSSQRPLKIGKTTDQVFHGDEEEAETMNPKPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGS 120
           FSGSQ+QPNCRTVVG LEEAFQKFIGQ V VFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRT----------------------- 120

Query: 121 TTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEV 180
                                             DAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 121 ----------------------------------DAGVHALSNVCHVDVERISKRKPGEV 180

Query: 181 LTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSS 240
           L PHEP VV +AVNHFLQK EGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPE LSS
Sbjct: 181 LPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSS 240

Query: 241 FEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300
           FEKDRAWHVPETLNI AMQ ACKVLVGHHDFSSFRAAGCQANSPIRTLDEL+VCEV STP
Sbjct: 241 FEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTP 300

Query: 301 YFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGV 360
           YFPT MERKQRQGKEE+ NE PHSETCEVGFGIRRRHRC VVTARARSFLYHQVRLMVGV
Sbjct: 301 YFPTSMERKQRQGKEESENEEPHSETCEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGV 352

Query: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPEPH 411
           LKAVGTGDLTVGDVERILEAKNVSSA PMAPACGLYLGHVKYDL PP PH
Sbjct: 361 LKAVGTGDLTVGDVERILEAKNVSSARPMAPACGLYLGHVKYDL-PPAPH 352

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BLAST of Lag0002498.1 vs. ExPASy Swiss-Prot
Match: B6IPI0 (tRNA pseudouridine synthase A OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=truA PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.9e-38
Identity = 120/356 (33.71%), Postives = 153/356 (42.98%), Query Frame = 0


Query: 47  IQRYLVAVEYIGTRFSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKL 106
           +QR+ + +EY G  F G Q+Q N  +V   LEEA  +F  ++V VFC+ RT         
Sbjct: 1   MQRWKLTLEYDGRPFVGWQRQDNGPSVQQALEEAIYRFTQETVTVFCAGRT--------- 60

Query: 107 KLKSILETYISQGSTTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCH 166
                                                           DAGVHAL+ V  
Sbjct: 61  ------------------------------------------------DAGVHALAMVAS 120

Query: 167 VDVERISKRKPGEVLTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERT 226
           VD+ R +               V+ A+N  L+     V V+ V  V  DFHAR+    R 
Sbjct: 121 VDLAREA-----------TADKVQAALNFHLKPH--PVAVLRVEPVAPDFHARFSCLGRA 180

Query: 227 YFYRLVSGPETLSSFEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIR 286
           Y YR+++     ++ E  R WHV   L+ EAM  A + LVG HDFSSFRA+ CQA SP++
Sbjct: 181 YLYRILN-RRAPAALEAGRVWHVQGGLDAEAMHEAAQRLVGQHDFSSFRASLCQAKSPVK 240

Query: 287 TLDELDVCEVVSTPYFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARA 346
           TL +L V  V                  EE R                       + ARA
Sbjct: 241 TLSDLSVARV-----------------GEEVR-----------------------IVARA 245

Query: 347 RSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKY 403
           RSFL+HQVR MVG LK VG G  T  DV R L A+N S+A P APA GLY     Y
Sbjct: 301 RSFLHHQVRNMVGTLKLVGEGRWTADDVSRALAARNRSAAGPTAPAAGLYFTEAWY 245

[Close]

BLAST of Lag0002498.1 vs. ExPASy Swiss-Prot
Match: A7IKI9 (tRNA pseudouridine synthase A OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) OX=78245 GN=truA PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-37
Identity = 113/354 (31.92%), Postives = 155/354 (43.79%), Query Frame = 0


Query: 49  RYLVAVEYIGTRFSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKL 108
           RY + +EY GT ++G Q Q + +TV G L +AF++F G+ V V  + RT           
Sbjct: 3   RYKLTIEYDGTPYAGWQIQADQQTVQGALAQAFKRFCGEDVHVAGAGRT----------- 62

Query: 109 KSILETYISQGSTTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVD 168
                                                         DAGVHA   V HVD
Sbjct: 63  ----------------------------------------------DAGVHATGQVAHVD 122

Query: 169 VERISKRKPGEVLTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYF 228
           + R                 VR A+    Q +   + V+    VP+ F AR+ A +R Y 
Sbjct: 123 LSR-----------HWRSDTVRDAMT--AQLRPHPIAVLSAEEVPDSFDARFSATKRHYL 182

Query: 229 YRLVSGPETLSSFEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTL 288
           YR+++    L + ++DRAW +P+ L+ +AM  A + L+G HDFS+FRAA CQA SP++TL
Sbjct: 183 YRIINRRPDL-ALDRDRAWRIPQKLDAQAMHEAAQRLLGKHDFSTFRAAECQAASPLKTL 242

Query: 289 DELDVCEVVSTPYFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARS 348
           D+LDV                 R G E                        + V   ARS
Sbjct: 243 DQLDV----------------SRSGDE------------------------IRVITSARS 245

Query: 349 FLYHQVRLMVGVLKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKY 403
           FL+HQVR MVG L  VG G  +  D+E  L+A + +   PMAPA GLYL  V Y
Sbjct: 303 FLHHQVRSMVGSLMRVGEGRWSADDLEAALKAADRTRCGPMAPAAGLYLAAVSY 245

[Close]

BLAST of Lag0002498.1 vs. ExPASy Swiss-Prot
Match: A9ILJ7 (tRNA pseudouridine synthase A OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=truA PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.4e-37
Identity = 107/358 (29.89%), Postives = 161/358 (44.97%), Query Frame = 0


Query: 47  IQRYLVAVEYIGTRFSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKL 106
           + R+ + +EY G+ ++G Q+Q    T+ G LE+A  +F GQ + +  + RT         
Sbjct: 1   MSRFKLTLEYDGSNYAGWQRQAKLHTIQGALEQAIFRFSGQQLTITTAGRT--------- 60

Query: 107 KLKSILETYISQGSTTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCH 166
                                                           DAGVHA   V H
Sbjct: 61  ------------------------------------------------DAGVHATGQVAH 120

Query: 167 VDVERISKRKPGEVLTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERT 226
           VD     K  P        P  VR A+N  L++Q   +++++V +VP+DF AR+ A +R 
Sbjct: 121 VD---FIKNWP--------PHTVRDALNALLRQQSEAISILNVENVPDDFDARFSAIKRH 180

Query: 227 YFYRLVS--GPETLSSFEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSP 286
           Y +++++   P  L++    R W +P+ LN +AM  A + LVG HDF++FR+A CQA SP
Sbjct: 181 YLFKILNRRSPPALNA---KRVWWIPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQAKSP 240

Query: 287 IRTLDELDVCEVVSTPYFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTA 346
           IRTL+ LD+                Q++G+E                        + + A
Sbjct: 241 IRTLERLDI----------------QKEGEE------------------------IFIYA 247

Query: 347 RARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKY 403
           +ARSFL+HQ+R   G L  VG G  T  D+E  L AK+      +AP  GLYL  V+Y
Sbjct: 301 KARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGVVAPPSGLYLTKVEY 247

[Close]

BLAST of Lag0002498.1 vs. ExPASy Swiss-Prot
Match: Q6G547 (tRNA pseudouridine synthase A OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=truA PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-36
Identity = 108/356 (30.34%), Postives = 158/356 (44.38%), Query Frame = 0


Query: 49  RYLVAVEYIGTRFSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKL 108
           R+ + +EY G+ ++G Q+Q   RT+   LE+A   F GQ + +  + RT           
Sbjct: 3   RFKLTLEYDGSNYAGWQRQAELRTIQSALEQALFHFSGQQLTITTAGRT----------- 62

Query: 109 KSILETYISQGSTTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVD 168
                                                         DAGVHA   V HVD
Sbjct: 63  ----------------------------------------------DAGVHATGQVAHVD 122

Query: 169 VERISKRKPGEVLTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYF 228
            E+                 VR A+N  LQKQ  ++ ++ V++VP+ F AR+ A +R Y 
Sbjct: 123 FEK-----------NWRTHTVRDALNAHLQKQGDNIAILHVQNVPDSFDARFSAIKRHYL 182

Query: 229 YRLVS--GPETLSSFEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIR 288
           +++++   P  L++    R W +P+ LN +AM  A + LVG HDF++FR+A CQA SPIR
Sbjct: 183 FKILNRRSPPALNT---KRVWWIPKPLNAQAMHEAAQKLVGKHDFTTFRSAHCQAKSPIR 242

Query: 289 TLDELDVCEVVSTPYFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARA 348
           TL+ LDV                QR+G+E                        + + A+A
Sbjct: 243 TLERLDV----------------QREGEE------------------------IFLYAQA 247

Query: 349 RSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKY 403
           RSFL+HQ+R   G L  VG G  T  D+E  L AK+ +    +AP  GLYL  V+Y
Sbjct: 303 RSFLHHQIRSFAGSLMEVGIGRWTTQDLEAALHAKDRTRCGMVAPPSGLYLTKVEY 247

[Close]

BLAST of Lag0002498.1 vs. ExPASy Swiss-Prot
Match: A1UUB6 (tRNA pseudouridine synthase A OS=Bartonella bacilliformis (strain ATCC 35685 / NCTC 12138 / KC583) OX=360095 GN=truA PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-35
Identity = 109/356 (30.62%), Postives = 157/356 (44.10%), Query Frame = 0


Query: 49  RYLVAVEYIGTRFSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKL 108
           R+ + +EY G+ ++G Q+Q   RTV G +E+A   F GQ + +  + RT           
Sbjct: 3   RFKLTLEYDGSNYAGWQRQAELRTVQGAVEQAIFHFSGQQLTITTAGRT----------- 62

Query: 109 KSILETYISQGSTTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVD 168
                                                         DAGVHA   V HVD
Sbjct: 63  ----------------------------------------------DAGVHATGQVAHVD 122

Query: 169 VERISKRKPGEVLTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYF 228
            E     K   V T H       A+N  L++Q  ++ +++V ++P+ F AR  A +R Y 
Sbjct: 123 FE-----KDWHVNTIH------NALNAHLRQQGDNIAILNVENIPDSFDARLSAVKRHYL 182

Query: 229 YRLVS--GPETLSSFEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIR 288
           +++++   P  L++    R W +P  LN +AM  A + LVG HDF++FR+A CQA SPIR
Sbjct: 183 FKILNRRAPPALNA---KRVWWLPRPLNADAMHKAAQKLVGKHDFTTFRSAHCQAKSPIR 242

Query: 289 TLDELDVCEVVSTPYFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARA 348
           TL+ LDV                QR+G+E                        + + ARA
Sbjct: 243 TLECLDV----------------QREGEE------------------------IFLYARA 247

Query: 349 RSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKY 403
           RSFL+HQ+R   G L  VG G  T  D+E  L AK+ +    +AP  GLYL  V Y
Sbjct: 303 RSFLHHQIRSFAGSLMEVGIGRWTAQDLEEALHAKDRARCGMVAPPSGLYLTQVDY 247

[Close]

BLAST of Lag0002498.1 vs. ExPASy TrEMBL
Match: A0A6J1KFZ8 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111492882 PE=3 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 2.9e-174
Identity = 318/409 (77.75%), Postives = 330/409 (80.68%), Query Frame = 0


Query: 1   MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTR 60
           MTENQKHRLE+SSDSSPQRPLKIGK T+E L  D EEAE+MNR PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGS 120
           FSGSQ+QPNCRTVVGVLEEAF+KFIGQSV VFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEV 180
                                             DAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 121 ----------------------------------DAGVHALSNVCHVDVERISKRKPGEV 180

Query: 181 LTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSS 240
           L PHEP VVRRAVNHFLQK +GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPETLSS
Sbjct: 181 LPPHEPGVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSS 240

Query: 241 FEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300
           F+KDR WHVPE LNI AMQ ACKVLVGHHDFSSFRAAGCQANSP+RTLDELDVCEV+STP
Sbjct: 241 FDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVISTP 300

Query: 301 YFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGV 360
           YFP+ MERKQRQGKEE  NEV HSE+ EVGFGIRRRHRC VVTARARSFLYHQVRLMVGV
Sbjct: 301 YFPSSMERKQRQGKEEGENEVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGV 352

Query: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPEP 410
           LK VGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPP P
Sbjct: 361 LKVVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPLP 352

[Close]

BLAST of Lag0002498.1 vs. ExPASy TrEMBL
Match: A0A6J1GY72 (tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111458281 PE=3 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 2.9e-174
Identity = 319/409 (78.00%), Postives = 330/409 (80.68%), Query Frame = 0


Query: 1   MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTR 60
           MTENQKHRLE+SSDSSPQRPLKIGK T+E L  D EEAE+MNR PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGS 120
           FSGSQ+QPNCRTVVGVLEEAF+KFIGQSV VFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEV 180
                                             DAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 121 ----------------------------------DAGVHALSNVCHVDVERISKRKPGEV 180

Query: 181 LTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSS 240
           L PHEP VVRRAVNHFLQK +GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPETLSS
Sbjct: 181 LPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSS 240

Query: 241 FEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300
           F+KDR WHVPE LNI AMQ ACKVLVGHHDFSSFRAAGCQANSP+RTLDELDVCEVVSTP
Sbjct: 241 FDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTP 300

Query: 301 YFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGV 360
           YFP+ MERKQRQGKEE  N V HSE+ EVGFGIRRRHRC VVTARARSFLYHQVRLMVGV
Sbjct: 301 YFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGV 352

Query: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPEP 410
           LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPP P
Sbjct: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPPP 352

[Close]

BLAST of Lag0002498.1 vs. ExPASy TrEMBL
Match: A0A5D3CZZ6 (tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002730 PE=3 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 4.1e-173
Identity = 319/410 (77.80%), Postives = 324/410 (79.02%), Query Frame = 0


Query: 1   MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTR 60
           MTENQKH LE S DSS QRPLKIGK TD+V   D EEAE MN KPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLELSIDSSSQRPLKIGKTTDQVFHGDEEEAETMNPKPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGS 120
           FSGSQ+QPNCRTVVG LEEAFQKFIGQ V VFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRT----------------------- 120

Query: 121 TTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEV 180
                                             DAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 121 ----------------------------------DAGVHALSNVCHVDVERISKRKPGEV 180

Query: 181 LTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSS 240
           L PHEP VV +AVNHFLQK EGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPE LSS
Sbjct: 181 LPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSS 240

Query: 241 FEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300
           FEKDRAWHVPETLNI AMQ ACKVLVGHHDFSSFRAAGCQANSPIRTLDEL+VCEV STP
Sbjct: 241 FEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTP 300

Query: 301 YFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGV 360
           YFPT MERKQRQGKEE+ NE PHSETCEVGFGIRRRHRC VVTARARSFLYHQVRLMVGV
Sbjct: 301 YFPTSMERKQRQGKEESENEEPHSETCEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGV 352

Query: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPEPH 411
           LKAVGTGDLTVGDVERILEAKNVSSA PMAPACGLYLGHVKYDL PP PH
Sbjct: 361 LKAVGTGDLTVGDVERILEAKNVSSARPMAPACGLYLGHVKYDL-PPAPH 352

[Close]

BLAST of Lag0002498.1 vs. ExPASy TrEMBL
Match: A0A1S3BDG9 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 4.1e-173
Identity = 319/410 (77.80%), Postives = 324/410 (79.02%), Query Frame = 0


Query: 1   MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTR 60
           MTENQKH LE S DSS QRPLKIGK TD+V   D EEAE MN KPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLELSIDSSSQRPLKIGKTTDQVFHGDEEEAETMNPKPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGS 120
           FSGSQ+QPNCRTVVG LEEAFQKFIGQ V VFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRT----------------------- 120

Query: 121 TTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEV 180
                                             DAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 121 ----------------------------------DAGVHALSNVCHVDVERISKRKPGEV 180

Query: 181 LTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSS 240
           L PHEP VV +AVNHFLQK EGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPE LSS
Sbjct: 181 LPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSS 240

Query: 241 FEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300
           FEKDRAWHVPETLNI AMQ ACKVLVGHHDFSSFRAAGCQANSPIRTLDEL+VCEV STP
Sbjct: 241 FEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTP 300

Query: 301 YFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGV 360
           YFPT MERKQRQGKEE+ NE PHSETCEVGFGIRRRHRC VVTARARSFLYHQVRLMVGV
Sbjct: 301 YFPTSMERKQRQGKEESENEEPHSETCEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGV 352

Query: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPEPH 411
           LKAVGTGDLTVGDVERILEAKNVSSA PMAPACGLYLGHVKYDL PP PH
Sbjct: 361 LKAVGTGDLTVGDVERILEAKNVSSARPMAPACGLYLGHVKYDL-PPAPH 352

[Close]

BLAST of Lag0002498.1 vs. ExPASy TrEMBL
Match: A0A1S3BDY4 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1)

HSP 1 Score: 611.3 bits (1575), Expect = 3.0e-171
Identity = 318/410 (77.56%), Postives = 323/410 (78.78%), Query Frame = 0


Query: 1   MTENQKHRLEYSSDSSPQRPLKIGKITDEVLGSDTEEAEAMNRKPGIQRYLVAVEYIGTR 60
           MTENQKH LE S DSS QRPLKIGK TD+V   D EEAE MN KPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLELSIDSSSQRPLKIGKTTDQVFHGDEEEAETMNPKPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGS 120
           FSGSQ+QPNCRTVVG LEEAFQKFIGQ V VFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRT----------------------- 120

Query: 121 TTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEV 180
                                             DAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 121 ----------------------------------DAGVHALSNVCHVDVERISKRKPGEV 180

Query: 181 LTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSS 240
           L PHEP VV +AVNHFLQK EGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPE LSS
Sbjct: 181 LPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSS 240

Query: 241 FEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDVCEVVSTP 300
           FEKDRAWHVPETLNI AMQ ACKVLVGHHDFSSFRAAGCQANSPIRTLDEL+VCEV STP
Sbjct: 241 FEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTP 300

Query: 301 YFPTEMERKQRQGKEETRNEVPHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGV 360
           YFPT MERKQRQGKEE+ NE PHSETCEVGFGIRRRHRC VVTARARSFLYHQVRLMVGV
Sbjct: 301 YFPTSMERKQRQGKEESENEEPHSETCEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGV 351

Query: 361 LKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPEPH 411
           LKAVGTGDLTVGD ERILEAKNVSSA PMAPACGLYLGHVKYDL PP PH
Sbjct: 361 LKAVGTGDLTVGD-ERILEAKNVSSARPMAPACGLYLGHVKYDL-PPAPH 351

[Close]

BLAST of Lag0002498.1 vs. TAIR 10
Match: AT1G09800.1 (Pseudouridine synthase family protein )

HSP 1 Score: 422.9 bits (1086), Expect = 2.9e-118
Identity = 237/431 (54.99%), Postives = 278/431 (64.50%), Query Frame = 0


Query: 1   MTENQKHRLE-YSSDSSPQRPLKIGKI-------TDEVLG-SDTEEAEAMNRKPGIQRYL 60
           M++N KH L+  +S+ S +R  K+ +I       ++E  G +D E    +N  P +QRYL
Sbjct: 1   MSDNLKHPLDCTASEESLERLSKVARIEGFSDEESEEQQGLADLESMNPVN--PRVQRYL 60

Query: 61  VAVEYIGTRFSGSQKQPNCRTVVGVLEEAFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSI 120
           VA+EYIGTRFSGSQ+Q   RTVVGVL+EAF KFIGQ V +FCSSRT              
Sbjct: 61  VAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRT-------------- 120

Query: 121 LETYISQGSTTFILLIQILQCSGSFLPLGNSVHVMTFILFSTKDAGVHALSNVCHVDVER 180
                                                      DAGVHALSNVCHVDVER
Sbjct: 121 -------------------------------------------DAGVHALSNVCHVDVER 180

Query: 181 ISKRKPGEVLTPHEPQVVRRAVNHFLQKQEGDVTVVDVRSVPNDFHARYKAQERTYFYRL 240
           ISKRKPGEVL PHEP VV+RAVNHFLQ+++GDV V+DVR VP+++HARYKAQERTYFYRL
Sbjct: 181 ISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFYRL 240

Query: 241 VSGPETLSSFEKDRAWHVPETLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDEL 300
           +SG + LS  EKDR WHVPE LN+  MQ AC+VLVG HDFSSFRAAGCQA SP+R+LDEL
Sbjct: 241 LSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSPMRSLDEL 300

Query: 301 DVCEVVSTPYFPTEMER---KQRQGKEETRNEVPHSETCEV--------------GFGIR 360
           ++ EV STPYFP+  ER       G     +  P SET  V               FG R
Sbjct: 301 NITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVGEVEGSTEGDSFGRR 360

Query: 361 RRHRCLVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEAKNVSSASPMAPACG 406
           RRHRC VVTAR+R FLYHQVRL+VG LK VGTG+LTV DVERILEAK VS+A PMAPA G
Sbjct: 361 RRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASG 372

[Close]

BLAST of Lag0002498.1 vs. TAIR 10
Match: AT1G34150.1 (Pseudouridine synthase family protein )

HSP 1 Score: 50.1 bits (118), Expect = 5.1e-06
Identity = 45/180 (25.00%), Postives = 68/180 (37.78%), Query Frame = 0


Query: 203 DVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSSFEKDRAWHVPETLNIEAMQGAC 262
           D+ V+     P DFHAR+    R Y Y                 W   + LN+ AM  A 
Sbjct: 198 DIRVIGWSPAPIDFHARFSCYAREYKYFF---------------WR--QNLNLSAMDFAG 257

Query: 263 KVLVGHHDFSSFRAAGCQANSPIRTLDELDV-CEVVSTPYFPTEMERKQRQGKEETRNEV 322
           K  +G HDF +F    C+       +D  +V C      +F     +   +G +      
Sbjct: 258 KKFIGEHDFRNF----CK-------MDVANVHCYTRRVTFFEVSPCQNSHEGDQ------ 317

Query: 323 PHSETCEVGFGIRRRHRCLVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEAK 382
                                T R  +FL+HQ+R MV VL  +G G  +V  ++ +L+ K
Sbjct: 318 -----------------LCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTK 326

[Close]

BLAST of Lag0002498.1 vs. TAIR 10
Match: AT5G35400.1 (Pseudouridine synthase family protein )

HSP 1 Score: 47.4 bits (111), Expect = 3.3e-05
Identity = 94/412 (22.82%), Postives = 142/412 (34.47%), Query Frame = 0


Query: 26  ITDEVLGSDTEEAEAMNRKPGIQ------RYLVAVEYIGTRFSGSQKQPNCRTVVGVLEE 85
           IT+E+L     E E   RK G         + + + Y G  F G QKQP+  TV GV+E+
Sbjct: 67  ITEEMLLE--SEPETSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEK 126

Query: 86  AFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGSTTFILLIQILQCSGSFLPL 145
           +   F+ +             +  + LK K                      C     PL
Sbjct: 127 SLGGFVDE-------------RKAQLLKKK----------------------CK----PL 186

Query: 146 GNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEVLTPHEPQVVRRAVNHFLQK 205
              V     ++    D GV AL+ VC     R             EP  +  A+N   + 
Sbjct: 187 EGRV-----LVAGRTDKGVSALNQVCSFYTWR----------KDIEPIAIEDAIN---KD 246

Query: 206 QEGDVTVVDVRSVPNDFHARYKAQERTYFY--------RLVSGPETLSSF------EKDR 265
             G + VV +  V   FH  + A+ R Y Y         L    E   +F      +K R
Sbjct: 247 ASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDENKKKQR 306

Query: 266 AWHVPE------------TLNIEAMQGACKVLVGHHDFSSFRAAGCQANSPIRTLDELDV 325
              + E             L IE    A +V+    DFS          S +  L +   
Sbjct: 307 NGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSV---------SKVDQLLQHLQ 366

Query: 326 CEVVSTPYFPTEMERKQRQGKEETRNEVPHSETCEVGFGIR---RRHRCLVVTARARSFL 385
            +V+S   F  + +  + +G   T   + H+   E+           R + V   A  FL
Sbjct: 367 GKVLSYKMFARDTKAARNEG-PPTECFMYHARAAEIRLSSSDCVEGRRVMCVELVANRFL 409

Query: 386 YHQVRLMVGVLKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKY 403
              VR++V               + ++LEA    + +P AP+ GL L  V Y
Sbjct: 427 RKMVRVLVATSIREAAAGAEDDALLKLLEASCRRATAPPAPSEGLCLFDVGY 409

[Close]

BLAST of Lag0002498.1 vs. TAIR 10
Match: AT5G35400.2 (Pseudouridine synthase family protein )

HSP 1 Score: 43.9 bits (102), Expect = 3.6e-04
Identity = 52/210 (24.76%), Postives = 75/210 (35.71%), Query Frame = 0


Query: 26  ITDEVLGSDTEEAEAMNRKPGIQ------RYLVAVEYIGTRFSGSQKQPNCRTVVGVLEE 85
           IT+E+L     E E   RK G         + + + Y G  F G QKQP+  TV GV+E+
Sbjct: 67  ITEEMLLE--SEPETSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEK 126

Query: 86  AFQKFIGQSVPVFCSSRTDNIKPDEKLKLKSILETYISQGSTTFILLIQILQCSGSFLPL 145
           +   F+ +             +  + LK K                      C     PL
Sbjct: 127 SLGGFVDE-------------RKAQLLKKK----------------------CK----PL 186

Query: 146 GNSVHVMTFILFSTKDAGVHALSNVCHVDVERISKRKPGEVLTPHEPQVVRRAVNHFLQK 205
              V     ++    D GV AL+ VC     R             EP  +  A+N   + 
Sbjct: 187 EGRV-----LVAGRTDKGVSALNQVCSFYTWR----------KDIEPIAIEDAIN---KD 217

Query: 206 QEGDVTVVDVRSVPNDFHARYKAQERTYFY 230
             G + VV +  V   FH  + A+ R Y Y
Sbjct: 247 ASGKLRVVSISKVSRSFHPNFSAKWRRYLY 217

The following BLAST results are available for this feature:

BLAST of Lag0002498.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524389.1	3.5e-174	78.38	uncharacterized protein LOC111788293 [Cucurbita pepo subsp. pepo]	[more]
XP_022956590.1	5.9e-174	78.00	uncharacterized protein LOC111458281 [Cucurbita moschata]	[more]
XP_022998153.1	5.9e-174	77.75	uncharacterized protein LOC111492882 [Cucurbita maxima]	[more]
XP_038877867.1	8.5e-173	78.29	tRNA pseudouridine synthase A isoform X2 [Benincasa hispida]	[more]
XP_008445970.1	8.5e-173	77.80	PREDICTED: tRNA pseudouridine synthase A isoform X1 [Cucumis melo] >KAA0034150.1...	[more]

BLAST of Lag0002498.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6IPI0	4.9e-38	33.71	tRNA pseudouridine synthase A OS=Rhodospirillum centenum (strain ATCC 51521 / SW...	[more]
A7IKI9	1.9e-37	31.92	tRNA pseudouridine synthase A OS=Xanthobacter autotrophicus (strain ATCC BAA-115...	[more]
A9ILJ7	2.4e-37	29.89	tRNA pseudouridine synthase A OS=Bartonella tribocorum (strain CIP 105476 / IBS ...	[more]
Q6G547	1.2e-36	30.34	tRNA pseudouridine synthase A OS=Bartonella henselae (strain ATCC 49882 / DSM 28...	[more]
A1UUB6	1.3e-35	30.62	tRNA pseudouridine synthase A OS=Bartonella bacilliformis (strain ATCC 35685 / N...	[more]

BLAST of Lag0002498.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFZ8	2.9e-174	77.75	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111492882 PE=3 SV=...	[more]
A0A6J1GY72	2.9e-174	78.00	tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111458281 PE=3 S...	[more]
A0A5D3CZZ6	4.1e-173	77.80	tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BDG9	4.1e-173	77.80	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1	[more]
A0A1S3BDY4	3.0e-171	77.56	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1	[more]

BLAST of Lag0002498.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09800.1	2.9e-118	54.99	Pseudouridine synthase family protein	[more]
AT1G34150.1	5.1e-06	25.00	Pseudouridine synthase family protein	[more]
AT5G35400.1	3.3e-05	22.82	Pseudouridine synthase family protein	[more]
AT5G35400.2	3.6e-04	24.76	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	3.30.70.660		coord: 223..401 e-value: 5.6E-40 score: 138.3
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 261..403 e-value: 3.3E-31 score: 108.0
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 45..100 e-value: 8.1E-12 score: 47.3 coord: 114..222 e-value: 2.2E-9 score: 39.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11142:SF0	TRNA PSEUDOURIDINE SYNTHASE-LIKE 1	coord: 145..403 coord: 33..98
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 145..403 coord: 33..98
IPR001406	Pseudouridine synthase I, TruA	HAMAP	MF_00171	TruA	coord: 48..402 score: 27.209576
IPR001406	Pseudouridine synthase I, TruA	CDD	cd02570	PseudoU_synth_EcTruA	coord: 54..402 e-value: 3.05825E-97 score: 288.603
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 155..403
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 47..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0002498	Lag0002498	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0002498.1.exon11	Lag0002498.1.exon11	exon
Lag0002498.1.exon10	Lag0002498.1.exon10	exon
Lag0002498.1.exon9	Lag0002498.1.exon9	exon
Lag0002498.1.exon8	Lag0002498.1.exon8	exon
Lag0002498.1.exon7	Lag0002498.1.exon7	exon
Lag0002498.1.exon6	Lag0002498.1.exon6	exon
Lag0002498.1.exon5	Lag0002498.1.exon5	exon
Lag0002498.1.exon4	Lag0002498.1.exon4	exon
Lag0002498.1.exon3	Lag0002498.1.exon3	exon
Lag0002498.1.exon2	Lag0002498.1.exon2	exon
Lag0002498.1.exon1	Lag0002498.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0002498.1	cds.Lag0002498.1_11	CDS
cds.Lag0002498.1	cds.Lag0002498.1_10	CDS
cds.Lag0002498.1	cds.Lag0002498.1_9	CDS
cds.Lag0002498.1	cds.Lag0002498.1_8	CDS
cds.Lag0002498.1	cds.Lag0002498.1_7	CDS
cds.Lag0002498.1	cds.Lag0002498.1_6	CDS
cds.Lag0002498.1	cds.Lag0002498.1_5	CDS
cds.Lag0002498.1	cds.Lag0002498.1_4	CDS
cds.Lag0002498.1	cds.Lag0002498.1_3	CDS
cds.Lag0002498.1	cds.Lag0002498.1_2	CDS
cds.Lag0002498.1	cds.Lag0002498.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0002498.1	Lag0002498.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0031119	tRNA pseudouridine synthesis
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0106029	tRNA pseudouridine synthase activity