Lag0000780.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0000780.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 16237402 .. 16239862 (-)
Sequence length684
RNA-Seq ExpressionLag0000780.1
SyntenyLag0000780.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGGTGAATTCAAAGCCTCCACACCCTCCATTTGAATTTTTTTTTTTTATAGAGTCAATTTCTTGATCTCTGTGTCCATCATTTTATTTCGTTCCACACAAGTGAATAATAGTTTTTAAAATATAATTTGAAATATATGAACCTCTTAACGACGATATGTTCAATATATATATATATTTTTTTTTTGGAAAAATACACTTTTGGTCACTAAGGTTTGGGTTAGGTTTCATTTTGGTCCCTGAGTTTTCAAACTCAACAATTTAGTCCCTGAAGTTTGATTTTAGTTTCATTTTGGTCCCTCCATCCAATCTTCCGTTAATAATTAACGGATTGCAGACGTGGCAAATTTTTTTATTAATTTTTTTTTTAATTTTTTTAAAATATAAATATAATAAAATAATAACAATATTATTACTTTACATATTTTTTTTATTTATTTCCCCTCTCTCCCTTCTTCTTCACCTAACTCATCCCTCTTCTTCTTCGCCTAACTCCGACAGGTGCTTCTTCTTCAACACCGGTCGCCGATGTGTTTTTTTTTTCCTGTTTTCCTTTCTTTCCTCTCTTTTCTTCTCCTTTTATCTCCATTTTCTTTTTTTCCTCTTATTCTTCGGCAAAGCAACGCACAGATCTGGGCGAAGCAGTGCACGAATCCCTCCCTCTTGCTCGTGTTGGTCGCCGGCAACAAGAAACCCATAAGAAAAATCGTGACGACGAAGCGAAACCCACAAGAAAAATTGTCGGGAACCTCGTTCTAGACGAGACCCGCTGTCGTCCGACGAGATCTGAGTCTCCACGACGTCCGATGCACTTCCCCAACTCAAATCTTGAAGTTTCTAATTTCTGGCAAGACACTTCGTCCCGACGAGATCCGCGAACAAAGTCGAACTACCCACGAACCGGCGAGCACTGCAAACAAATTAGCCAACCGCAAGCCACGATGAGGTTCAGATCTGAACGCAGCCAACGTGTTCTGGTCATTGTCCGAAAAGGAGAGGAAAAATACATAGAGATCGGGTGAGAGGGGAAAAATTGTAGCAGCCAGTTTTTTTTTGAAAAAAAAAAGAGAGGAAGGGAATGGGCTAATGCCAGGTCAAGACGGAAAAGGAAAAAAGGGGGGGAAACTTTCCCCCCAAAATCGGTCAACTGACCGTATTTAAAAAAAAATCTCTGAAGCTTCTCTCTCTCTCTCTCACCCGATACCCTCTCTCCCTCTCTCGGCAATCTCCCTCTCTCTCATACTCTCCCTCCACCCGACGCACGCCGCCACCTCCACTGACACTCGACGCCACCGCACGCCGCAAGCCGTCGCCGTCGGTAAACGTCTCTCATCTCTCTCTCTCTCCCAGTTTTTTCTCTCTCGTCTCTTTCTCCCTCGATCTCACTCTCTCTCACGCCCATCCCCTCCCTTCTCTGTCTCATGTTGTAGCAGCGTCGGTGCGCGCGTTTAGCATTGTTTCCCGGTAGTAACACTGTAGGCACAGACAGCAGCGAGGAGGGACCGTTTTTTTGTATTTTCGGGTGTTTTAGGTGAGTTCTCGCATTGGGTAAGTTGGTTTGAGGCTTATGTAGGTTAGTTCTTGCATTTAAACGATTACCCATTCACTTCTTCTCCTGTTCAGCAAGTGTACCCATTCAATTACGGCGATTCAAGCAGTGGGTCTTCGCGTTTCAGCGTGTTTGAGCAATTTCGGCTTTGGGTAAGTGAACTAAGTTAAGTTTTGAATGATTTAATTGGGTTAAAGGAGTACCCATTGATTTTGGCATGTGGTTGCAAGGTTCTCTTAGCTTTTGGGGATTTAATCGTCAATTTGGAGCGTTATTGGATCATTGGACACCAAGCTAAAGGTTGAGTTTGGGTAAGTTTTTGGAAGTTGAACCTTCTCTAAATTAATGGGTTTCTAGTTGAATGCTTGGATTAGAGTCCCTATTTGATTGAGAGTTTCGTTCCTTGTTGTAGCTTGCTTAAGAGCCTTGGAGTTAAGAAATTTCTTGAAGGTTGATCCAATATCTTCTTCACTAAGGTAAGTAGCCCTTTGGAATAAAACTTTGTGCTTTAAAACTCATTAAAGTTGAGTGTGACTTATAATAGCATGAGTTGGATTCAATCCTTAAGTTGCCCTTGGAATTTAAGTAGCTAGTTGGATTCAAATTCCATGTTTTAAATGCATTGTATGGTAGCTGAACATGGTAGGTAATTCGCTGCGTTAGCAAGAAATGTTTATGCATTAAAATAATTGTTTGCTCCAAGCCTGAATTGGTATTAAAAATTTGGATTGAGATTGAGATGTTATGTATATGGTTGTTGTGTACTTGTGTTGTATGATGGGTGAAAGTGCTGGACTGTTTTATATTATAAGTTGACTGGTATTGTCTGTGGACAACGGGGAGTTTGTGTTGTATCTCTGTTTAGGAGTGTTGCTGTCGCCTTCATTCTTGTTCTTGAGATTGTTTGA

mRNA sequence

ATGCAACGCACAGATCTGGGCGAAGCAGTGCACGAATCCCTCCCTCTTGCTCGTGTTGGTCGCCGGCAACAAGAAACCCATAAGAAAAATCGTGACGACGAAGCGAAACCCACAAGAAAAATTGTCGGGAACCTCGTTCTAGACGAGACCCGCTGTCGTCCGACGAGATCTGAGTCTCCACGACGTCCGATGCACTTCCCCAACTCAAATCTTGAAGTTTCTAATTTCTGGCAAGACACTTCGTCCCGACGAGATCCGCGAACAAAGTCGAACTACCCACGAACCGGCGAGCACTGCAAACAAATTAGCCAACCGCAAGCCACGATGAGGTTCAGATCTGAACGCAGCCAACGTGTTCTGGCACAGACAGCAGCGAGGAGGGACCGTTTTTTTGTATTTTCGGGTGTTTTAGGTGAGTTCTCGCATTGGCAAGTGTACCCATTCAATTACGGCGATTCAAGCAGTGGGTCTTCGCGTTTCAGCGTGTTTGAGCAATTTCGGCTTTGGGTTCTCTTAGCTTTTGGGGATTTAATCGTCAATTTGGAGCGTTATTGGATCATTGGACACCAAGCTAAAGCTTGCTTAAGAGCCTTGGAGTTAAGAAATTTCTTGAAGGTTGATCCAATATCTTCTTCACTAAGGAGTGTTGCTGTCGCCTTCATTCTTGTTCTTGAGATTGTTTGA

Coding sequence (CDS)

ATGCAACGCACAGATCTGGGCGAAGCAGTGCACGAATCCCTCCCTCTTGCTCGTGTTGGTCGCCGGCAACAAGAAACCCATAAGAAAAATCGTGACGACGAAGCGAAACCCACAAGAAAAATTGTCGGGAACCTCGTTCTAGACGAGACCCGCTGTCGTCCGACGAGATCTGAGTCTCCACGACGTCCGATGCACTTCCCCAACTCAAATCTTGAAGTTTCTAATTTCTGGCAAGACACTTCGTCCCGACGAGATCCGCGAACAAAGTCGAACTACCCACGAACCGGCGAGCACTGCAAACAAATTAGCCAACCGCAAGCCACGATGAGGTTCAGATCTGAACGCAGCCAACGTGTTCTGGCACAGACAGCAGCGAGGAGGGACCGTTTTTTTGTATTTTCGGGTGTTTTAGGTGAGTTCTCGCATTGGCAAGTGTACCCATTCAATTACGGCGATTCAAGCAGTGGGTCTTCGCGTTTCAGCGTGTTTGAGCAATTTCGGCTTTGGGTTCTCTTAGCTTTTGGGGATTTAATCGTCAATTTGGAGCGTTATTGGATCATTGGACACCAAGCTAAAGCTTGCTTAAGAGCCTTGGAGTTAAGAAATTTCTTGAAGGTTGATCCAATATCTTCTTCACTAAGGAGTGTTGCTGTCGCCTTCATTCTTGTTCTTGAGATTGTTTGA

Protein sequence

MQRTDLGEAVHESLPLARVGRRQQETHKKNRDDEAKPTRKIVGNLVLDETRCRPTRSESPRRPMHFPNSNLEVSNFWQDTSSRRDPRTKSNYPRTGEHCKQISQPQATMRFRSERSQRVLAQTAARRDRFFVFSGVLGEFSHWQVYPFNYGDSSSGSSRFSVFEQFRLWVLLAFGDLIVNLERYWIIGHQAKACLRALELRNFLKVDPISSSLRSVAVAFILVLEIV
Homology
The following BLAST results are available for this feature:
BLAST of Lag0000780.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0000780.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0000780.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0000780.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0000780Lag0000780gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0000780.1.exon7Lag0000780.1.exon7exon
Lag0000780.1.exon6Lag0000780.1.exon6exon
Lag0000780.1.exon5Lag0000780.1.exon5exon
Lag0000780.1.exon4Lag0000780.1.exon4exon
Lag0000780.1.exon3Lag0000780.1.exon3exon
Lag0000780.1.exon2Lag0000780.1.exon2exon
Lag0000780.1.exon1Lag0000780.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0000780.1cds.Lag0000780.1_7CDS
cds.Lag0000780.1cds.Lag0000780.1_6CDS
cds.Lag0000780.1cds.Lag0000780.1_5CDS
cds.Lag0000780.1cds.Lag0000780.1_4CDS
cds.Lag0000780.1cds.Lag0000780.1_3CDS
cds.Lag0000780.1cds.Lag0000780.1_2CDS
cds.Lag0000780.1cds.Lag0000780.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0000780.1Lag0000780.1-proteinpolypeptide