IVF0024412.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0024412.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr06: 23756233 .. 23756555 (-)
Sequence length192
RNA-Seq ExpressionIVF0024412.1
SyntenyIVF0024412.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGAACATTTGCAACCCTCTTGGTTGATCTTCAGAGAAGTGAGAAATTATATGGTGAGTAGTTGATAAATGTAATAATTTTCCAAGTGATTTTGCCAATTGTATTTTACACAAATGTCAACTATCCAACATCTGTAACATAGTACACAGATTCATTCAGAAGCAGAGATGAACATTGAGAGAAAAATATGTTGGCCTTTGATGGTCTACTGAGAATTTAGGCTGTGAGGGATCCATATGGTTTATTAGGGTATATATGGGCCAGACCTGTTGAAAGGATTCGGCCATCTTACATTTTAGGTTTCATTGTAGCCAATTAA

mRNA sequence

ATGACAGAACATTTGCAACCCTCTTGGTTGATCTTCAGAGAAGTGAGAAATTATATGATTCATTCAGAAGCAGAGATGAACATTGAGAGAAAAATATGTTGGGATCCATATGGTTTATTAGGGTATATATGGGCCAGACCTGTTGAAAGGATTCGGCCATCTTACATTTTAGGTTTCATTGTAGCCAATTAA

Coding sequence (CDS)

ATGACAGAACATTTGCAACCCTCTTGGTTGATCTTCAGAGAAGTGAGAAATTATATGATTCATTCAGAAGCAGAGATGAACATTGAGAGAAAAATATGTTGGGATCCATATGGTTTATTAGGGTATATATGGGCCAGACCTGTTGAAAGGATTCGGCCATCTTACATTTTAGGTTTCATTGTAGCCAATTAA

Protein sequence

MTEHLQPSWLIFREVRNYMIHSEAEMNIERKICWDPYGLLGYIWARPVERIRPSYILGFIVAN
Homology
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BLAST of IVF0024412.1 vs. ExPASy TrEMBL
Match: A0A0A0L206 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G044500 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 58/70 (82.86%), Postives = 60/70 (85.71%), Query Frame = 0 

Query: 1  MTEHLQPSWLIFREVRNYMIHSEAEMNIERKICW-------DPYGLLGYIWARPVERIRP 60
          MTEHLQPSWLIFREVRNYMIHSEAEMN ERKIC        DPYGLLGYIWA+PVERI+P
Sbjct: 1  MTEHLQPSWLIFREVRNYMIHSEAEMNTERKICLLRIQAVRDPYGLLGYIWAKPVERIQP 60

Query: 61 SYILGFIVAN 64
           YILGFIVAN
Sbjct: 61 PYILGFIVAN 70

The following BLAST results are available for this feature:
BLAST of IVF0024412.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0024412.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2066.4e-2582.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G044500 PE=4 SV=1[more]
BLAST of IVF0024412.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of IVF0024412.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0024412IVF0024412gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0024412.1-exonIVF0024412.1-exon-chr06:23756233..23756323exon
IVF0024412.1-exonIVF0024412.1-exon-chr06:23756359..23756402exon
IVF0024412.1-exonIVF0024412.1-exon-chr06:23756499..23756555exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0024412.1-cdsIVF0024412.1-cds-chr06:23756233..23756323CDS
IVF0024412.1-cdsIVF0024412.1-cds-chr06:23756359..23756402CDS
IVF0024412.1-cdsIVF0024412.1-cds-chr06:23756499..23756555CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0024412.1IVF0024412.1-proteinpolypeptide