IVF0024294.2 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGATTTTAACTTCTTCTAGCGCTCTTTCTTCTCCGGCGATTCCTCTCCTCCTTGTTTCCCTCACCTCCGTTTCAATGGAGGGGCTTAAGGTTTCCGATGCCAATATGGTTGTTTACGTTCACCCGTCAAAAAGTAAGAAGGTTTCGCAAGCGGTGCTTCGAGAGCTCGGCGCTATGCTTCTAAAGTAAGTCAAACTTCTTTTAGGCTTTCAACAGTTGTAGTGTCTAGTCTCTTGCAATTATAAGTTTTCCAGTTATTGACGGCGTTGGTTTGTTGAATTACTTGATTGGGGATACTATTTGTTAGTGGCAGAGTTGGACTAGCACAAATATGAAGTTAAGTCGCGTTACTAACACTGAATTTAGCCTTCAGAAATAGACGATTTTTGTTTGTTTCTGCGTTTCTATCAAGTAGATTTTGTTTTCTGGCTTGCTATTCTGAATGGACGAAATAAACATTTGGGTTGTGCTGTTTATGAACTCAGAATGTAAGATTTTGTTCTTGATTTTTGGGGAAAAATTAATTCATTTAGGAAATATTAAATATTTTTCATTCTCTTTGAACTCAAAGGCTTGAAGTTTAAACTTCTAGTGATTGTCATTGCTGCTTCTTTTGCTTCATTTAATCAACATTCAAGTTCATTTTTGTGGTCGATACCTATAAACTTGGGTCGTTAACTGCATTTTTTAATATTGCGTTCATTCTGTAGGTTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTACGAGGCCAAAATTATTGATAAAAATGCAAAGATTCTATCTGGAGTGCATCCTTATTTTGGCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTCCATGATTCTCATTGTATGTGAAGGAGTTTCATTTGTGATCTGGTCTCTCCCTTGTTTCCACTTGGAAAACAACACATCTAGAATCAAGTTGTTAATTATCAAGCTTGCATTTTAACATTCTTAGGGTACTTCATTGCATTATGATGGTAGACATATTAAATTGACTAATAGGAGGCCAAATGTTTTATTCCTCTTGTCCATGCTTTGTTGATAGTTTTCTTATCACTTCAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACATATGAAGACATTCGCGACGAATTCAAGCATAGAACAGTATGTTTTGTGCATTGTACTTGTGAATTCCTACCTTTCCCATTGATACACAGATCAGAAGGAAGTTTTCATTATCTTGTCTTGATTGTTTTGTGCATTGATTCTGACTTAGAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGGTTAGGTTTTTCCCTTTGATTATGCTTATCCCATAACATATAAGTCGAAAGTTAATCTTGAAGTTTTCGTCCAAATAATTGAAGAGCTGGAGTACCATGCTCATAGCTGATCGACAGCTCACCATAGGCTATTAATATTTCCCTATTCTTGATCTTCAGTTATGCAAATACCTTGATTATGTAAAAAGTGATTCATTCAACCTTGCAGTTTTGATGAGGAAATATTACATATATCTGGATCTCTAGTTCCATCTCATACAGGGAGCATCCATTGGTTGGAGAAGAATTCGGTTGAGGGTTCAGTAAGTATGAGGTGAGAAACTAAATTCTAAGAAGTTTTGAGCTATAATCCCCAAATGTCTTAATCTATTTTTTTTTCTCCCCTTAATTTTGCAGCAGTAAAAAGAAGATGAGAGAAAACGAGGGTGGGGTAATGTTGCAAGATACTGTTGGCACTGATGTAAATGCAGTTATCTTGAACGACCATCAGCCGAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGAAGGCTACTAGTTGTCGTATAACATAGATCATTTTTGTATCAGGTAACTTTTGCCATACTTCTCAATAGGATAGCTAAACTCTTGCTCTCTCAATTCATGCCTAAAATCTACATTAGCCACAAATTTAGCTGGAAAGTATATTTGAATTTGATTGTATATCTAGGGTGATGATGATTCAAACTTCTAAAGCAGAGATCCTCATTGTTTTAGTAAGAAAGAATTGGGAGATGCACCTTGCTGTTGGAAAACCACCTCCACTAAGATATCGACAACTTTTATATATCAGGGTGTGGACAAATGCAGCTCCTCGTTTTTGTAACATTATGAAGTTATAGCTCAAATCCATGTATTATGGGCTTAGGCCCAATGGACCTCGGTGAGTGAACGATATTTTACAGCCCAAATCTTGTGTCCAATATTGCATTTGGTAGGAAGTTTAATAACAGATGTCAACCGCCTAGACTTTGCTGAATATCGTCTTAAGATTTAGAACATTACATTTCTTAATTTCTTTCAAAAATCACGCACACACAAACAAACACTACACCACCAAACCGTTGGTTTATCAATCATTGTAATGAGGATATGATTTTGGGTTTGCAAGTACATTCCATTTGCACCGTTGACTCATGATTGCCACTG AAGATTTTAACTTCTTCTAGCGCTCTTTCTTCTCCGGCGATTCCTCTCCTCCTTGTTTCCCTCACCTCCGTTTCAATGGAGGGGCTTAAGGTTTCCGATGCCAATATGGTTGTTTACGTTCACCCGTCAAAAAGTAAGAAGGTTTCGCAAGCGGTGCTTCGAGAGCTCGGCGCTATGCTTCTAAAGTTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTACGAGGCCAAAATTATTGATAAAAATGCAAAGATTCTATCTGGAGTGCATCCTTATTTTGGCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACATATGAAGACATTCGCGACGAATTCAAGCATAGAACAAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTACATATATCTGGATCTCTAGTTCCATCTCATACAGGGAGCATCCATTGGTTGGAGAAGAATTCGGTTGAGGGTTCAGTAAGTATGAGCAGTAAAAAGAAGATGAGAGAAAACGAGGGTGGGGTAATGTTGCAAGATACTGTTGGCACTGATGTAAATGCAGTTATCTTGAACGACCATCAGCCGAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGAAGGCTACTAGTTGTCGTATAACATAGATCATTTTTGTATCAGTAAGAAAGAATTGGGAGATGCACCTTGCTGTTGGAAAACCACCTCCACTAAGATATCGACAACTTTTATATATCAGGGTGTGGACAAATGCAGCTCCTCGTTTTTGTAACATTATGAAGTTATAGCTCAAATCCATGTATTATGGGCTTAGGCCCAATGGACCTCGGTGAGTGAACGATATTTTACAGCCCAAATCTTGTGTCCAATATTGCATTTGGTAGGAAGTTTAATAACAGATGTCAACCGCCTAGACTTTGCTGAATATCGTCTTAAGATTTAGAACATTACATTTCTTAATTTCTTTCAAAAATCACGCACACACAAACAAACACTACACCACCAAACCGTTGGTTTATCAATCATTGTAATGAGGATATGATTTTGGGTTTGCAAGTACATTCCATTTGCACCGTTGACTCATGATTGCCACTG ATGGAGGGGCTTAAGGTTTCCGATGCCAATATGGTTGTTTACGTTCACCCGTCAAAAAGTAAGAAGGTTTCGCAAGCGGTGCTTCGAGAGCTCGGCGCTATGCTTCTAAAGTTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTACGAGGCCAAAATTATTGATAAAAATGCAAAGATTCTATCTGGAGTGCATCCTTATTTTGGCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACATATGAAGACATTCGCGACGAATTCAAGCATAGAACAAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTACATATATCTGGATCTCTAGTTCCATCTCATACAGGGAGCATCCATTGGTTGGAGAAGAATTCGGTTGAGGGTTCAGTAAGTATGAGCAGTAAAAAGAAGATGAGAGAAAACGAGGGTGGGGTAATGTTGCAAGATACTGTTGGCACTGATGTAAATGCAGTTATCTTGAACGACCATCAGCCGAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGA MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEFKHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSVEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVILNDHQPKTKKQKTTRIS Homology
BLAST of IVF0024294.2 vs. ExPASy Swiss-Prot
Match: O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 1.4e-05 Identity = 38/163 (23.31%), Postives = 82/163 (50.31%), Query Frame = 0
BLAST of IVF0024294.2 vs. ExPASy TrEMBL
Match: A0A1S4E5I5 (uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1) HSP 1 Score: 448.0 bits (1151), Expect = 2.4e-122 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
BLAST of IVF0024294.2 vs. ExPASy TrEMBL
Match: A0A5D3E6A0 (Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008220 PE=4 SV=1) HSP 1 Score: 448.0 bits (1151), Expect = 2.4e-122 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
BLAST of IVF0024294.2 vs. ExPASy TrEMBL
Match: A0A1S3CRF8 (uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1) HSP 1 Score: 442.2 bits (1136), Expect = 1.3e-120 Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0
BLAST of IVF0024294.2 vs. ExPASy TrEMBL
Match: A0A0A0LGG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1) HSP 1 Score: 426.0 bits (1094), Expect = 9.9e-116 Identity = 222/232 (95.69%), Postives = 227/232 (97.84%), Query Frame = 0
BLAST of IVF0024294.2 vs. ExPASy TrEMBL
Match: A0A6J1D5Y9 (uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016757 PE=4 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 4.9e-107 Identity = 205/232 (88.36%), Postives = 219/232 (94.40%), Query Frame = 0
BLAST of IVF0024294.2 vs. NCBI nr
Match: XP_008466499.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_016903501.1 PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >KAA0063270.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa] >TYK31504.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa]) HSP 1 Score: 450 bits (1158), Expect = 2.10e-159 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
BLAST of IVF0024294.2 vs. NCBI nr
Match: XP_008466500.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X2 [Cucumis melo]) HSP 1 Score: 444 bits (1142), Expect = 5.58e-157 Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0
BLAST of IVF0024294.2 vs. NCBI nr
Match: XP_011652444.1 (uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737671.1 uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737672.1 uncharacterized protein LOC101216589 [Cucumis sativus] >KGN60019.1 hypothetical protein Csa_001209 [Cucumis sativus]) HSP 1 Score: 428 bits (1100), Expect = 1.46e-150 Identity = 222/232 (95.69%), Postives = 227/232 (97.84%), Query Frame = 0
BLAST of IVF0024294.2 vs. NCBI nr
Match: XP_038898978.1 (uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida]) HSP 1 Score: 415 bits (1067), Expect = 1.62e-145 Identity = 216/232 (93.10%), Postives = 224/232 (96.55%), Query Frame = 0
BLAST of IVF0024294.2 vs. NCBI nr
Match: XP_022148351.1 (uncharacterized protein LOC111016757 [Momordica charantia] >XP_022149084.1 uncharacterized protein LOC111016757 [Momordica charantia]) HSP 1 Score: 399 bits (1026), Expect = 2.88e-139 Identity = 205/232 (88.36%), Postives = 219/232 (94.40%), Query Frame = 0
BLAST of IVF0024294.2 vs. TAIR 10
Match: AT1G75670.1 (DNA-directed RNA polymerases ) HSP 1 Score: 229.2 bits (583), Expect = 3.4e-60 Identity = 105/182 (57.69%), Postives = 146/182 (80.22%), Query Frame = 0
BLAST of IVF0024294.2 vs. TAIR 10
Match: AT1G75670.2 (DNA-directed RNA polymerases ) HSP 1 Score: 229.2 bits (583), Expect = 3.4e-60 Identity = 105/182 (57.69%), Postives = 146/182 (80.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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