IVF0024201.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTCACACACACAAACACCATACATACCCTCATCTCTCTGTTTTCAACAATTTTGAAAAAACGCCATGAGAACTCACCAACCAAAGCTTAAAACTCAACTCTTCTCTTGCGGATTCTTCCGCCATTGTACTCGCTCTGTCTTAAGCCCCACCGCCTCTCATTCCCCTGCTCTCCCTTCCCTTCCCTCCGCCTCCGACCAACCACCACCACCACCGCCGCCGCCCTCCCGCCGTCCACCCCTTCCCGATTCCGAATCCTCTTCCTCCTCTGCTTCTCAAAGCTTCACTCAATGGAGATTCCCACTTCCACATTCACCCATTTTTACACAACAACCTTCAATTTCAGACCCTCCTTCTACTTTCTCCATTCCCCTTCCGATCCTCTCCCCCCACCCATCTCTGCATCAGCCCTACAAGAAATCCTCCAAGTTGCACAGCTCCAACTCTGTTCCGCTTCAGATTCCGACCGCCTCGCCGCTCTCCAACTCCTCGAACGCTCCTTGGTTCCAAACCCATCTCTAGACTCCGACTGTACTCCCGAATTGATGCGCGGTTTAATCGAAAGTTTCAACATTAAAACCGGTTCCAAACCGGCCACCAAAATTCTATTGGCACTTTGTTTGGCAGAGGGTAATCGTCACGTTGCAGTGGAGGCAGGGGCGGTCGGCGCAGTGATAGAATCTCTGCCAGAGATGGAAGACGCGGCTGCCGAGCGAGCACTTGCGTCGCTCGAACTTATGTGTACGGTTGCTGAAGGAGCAGCAGAGGTTAGAGCTCACGCTCTTTCGGTGCCAGCTATGGTTACAATGATGGGAAGAATGGCAGCTAGAGGGAAGGAATCGGCCATAAGTGTGCTTGGGGTTATTTACGACAATGGGGTCTCGTCGGAAGCTAAGTCCGCAGTGACGGCGCCGCCAGAGGAGGTTGCGCGTGCGGTTGTTTTAGCGCTGCAGGGTGATAGTAGTGTGAGGGGAAGAAGAAAAGGGGCGAGACTTCTTAAGACACTGCAAGAGCAGCAAGACGAATTCTTCACTGCAGCCCTATAGATCCGGCGACTGTGGTCGGCCGGAGTTGATCGTTGAAGTGTGTTTAGTGTTAACCAATCCATAATTTTGAGATGACTAATACAGTTTGAATGGTTTTTGGTTAGACAAATAATTCAACTCTTATGGGG ATTTCACACACACAAACACCATACATACCCTCATCTCTCTGTTTTCAACAATTTTGAAAAAACGCCATGAGAACTCACCAACCAAAGCTTAAAACTCAACTCTTCTCTTGCGGATTCTTCCGCCATTGTACTCGCTCTGTCTTAAGCCCCACCGCCTCTCATTCCCCTGCTCTCCCTTCCCTTCCCTCCGCCTCCGACCAACCACCACCACCACCGCCGCCGCCCTCCCGCCGTCCACCCCTTCCCGATTCCGAATCCTCTTCCTCCTCTGCTTCTCAAAGCTTCACTCAATGGAGATTCCCACTTCCACATTCACCCATTTTTACACAACAACCTTCAATTTCAGACCCTCCTTCTACTTTCTCCATTCCCCTTCCGATCCTCTCCCCCCACCCATCTCTGCATCAGCCCTACAAGAAATCCTCCAAGTTGCACAGCTCCAACTCTGTTCCGCTTCAGATTCCGACCGCCTCGCCGCTCTCCAACTCCTCGAACGCTCCTTGGTTCCAAACCCATCTCTAGACTCCGACTGTACTCCCGAATTGATGCGCGGTTTAATCGAAAGTTTCAACATTAAAACCGGTTCCAAACCGGCCACCAAAATTCTATTGGCACTTTGTTTGGCAGAGGGTAATCGTCACGTTGCAGTGGAGGCAGGGGCGGTCGGCGCAGTGATAGAATCTCTGCCAGAGATGGAAGACGCGGCTGCCGAGCGAGCACTTGCGTCGCTCGAACTTATGTGTACGGTTGCTGAAGGAGCAGCAGAGGTTAGAGCTCACGCTCTTTCGGTGCCAGCTATGGTTACAATGATGGGAAGAATGGCAGCTAGAGGGAAGGAATCGGCCATAAGTGTGCTTGGGGTTATTTACGACAATGGGGTCTCGTCGGAAGCTAAGTCCGCAGTGACGGCGCCGCCAGAGGAGGTTGCGCGTGCGGTTGTTTTAGCGCTGCAGGGTGATAGTAGTGTGAGGGGAAGAAGAAAAGGGGCGAGACTTCTTAAGACACTGCAAGAGCAGCAAGACGAATTCTTCACTGCAGCCCTATAGATCCGGCGACTGTGGTCGGCCGGAGTTGATCGTTGAAGTGTGTTTAGTGTTAACCAATCCATAATTTTGAGATGACTAATACAGTTTGAATGGTTTTTGGTTAGACAAATAATTCAACTCTTATGGGG ATGGAGATTCCCACTTCCACATTCACCCATTTTTACACAACAACCTTCAATTTCAGACCCTCCTTCTACTTTCTCCATTCCCCTTCCGATCCTCTCCCCCCACCCATCTCTGCATCAGCCCTACAAGAAATCCTCCAAGTTGCACAGCTCCAACTCTGTTCCGCTTCAGATTCCGACCGCCTCGCCGCTCTCCAACTCCTCGAACGCTCCTTGGTTCCAAACCCATCTCTAGACTCCGACTGTACTCCCGAATTGATGCGCGGTTTAATCGAAAGTTTCAACATTAAAACCGGTTCCAAACCGGCCACCAAAATTCTATTGGCACTTTGTTTGGCAGAGGGTAATCGTCACGTTGCAGTGGAGGCAGGGGCGGTCGGCGCAGTGATAGAATCTCTGCCAGAGATGGAAGACGCGGCTGCCGAGCGAGCACTTGCGTCGCTCGAACTTATGTGTACGGTTGCTGAAGGAGCAGCAGAGGTTAGAGCTCACGCTCTTTCGGTGCCAGCTATGGTTACAATGATGGGAAGAATGGCAGCTAGAGGGAAGGAATCGGCCATAAGTGTGCTTGGGGTTATTTACGACAATGGGGTCTCGTCGGAAGCTAAGTCCGCAGTGACGGCGCCGCCAGAGGAGGTTGCGCGTGCGGTTGTTTTAGCGCTGCAGGGTGATAGTAGTGTGAGGGGAAGAAGAAAAGGGGCGAGACTTCTTAAGACACTGCAAGAGCAGCAAGACGAATTCTTCACTGCAGCCCTATAG MEIPTSTFTHFYTTTFNFRPSFYFLHSPSDPLPPPISASALQEILQVAQLQLCSASDSDRLAALQLLERSLVPNPSLDSDCTPELMRGLIESFNIKTGSKPATKILLALCLAEGNRHVAVEAGAVGAVIESLPEMEDAAAERALASLELMCTVAEGAAEVRAHALSVPAMVTMMGRMAARGKESAISVLGVIYDNGVSSEAKSAVTAPPEEVARAVVLALQGDSSVRGRRKGARLLKTLQEQQDEFFTAAL Homology
BLAST of IVF0024201.1 vs. ExPASy Swiss-Prot
Match: Q9FXA4 (U-box domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=PUB26 PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.1e-11 Identity = 61/199 (30.65%), Postives = 99/199 (49.75%), Query Frame = 0
BLAST of IVF0024201.1 vs. ExPASy Swiss-Prot
Match: Q9LT79 (U-box domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=PUB25 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09 Identity = 51/164 (31.10%), Postives = 85/164 (51.83%), Query Frame = 0
BLAST of IVF0024201.1 vs. ExPASy Swiss-Prot
Match: Q84TG3 (E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04 Identity = 41/138 (29.71%), Postives = 67/138 (48.55%), Query Frame = 0
BLAST of IVF0024201.1 vs. ExPASy TrEMBL
Match: A0A5A7T6P9 (U-box domain-containing protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004980 PE=4 SV=1) HSP 1 Score: 409.8 bits (1052), Expect = 8.0e-111 Identity = 226/232 (97.41%), Postives = 226/232 (97.41%), Query Frame = 0
BLAST of IVF0024201.1 vs. ExPASy TrEMBL
Match: A0A1S3CQB5 (U-box domain-containing protein 26 OS=Cucumis melo OX=3656 GN=LOC103503597 PE=4 SV=1) HSP 1 Score: 409.8 bits (1052), Expect = 8.0e-111 Identity = 226/232 (97.41%), Postives = 226/232 (97.41%), Query Frame = 0
BLAST of IVF0024201.1 vs. ExPASy TrEMBL
Match: A0A0A0LEW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895740 PE=4 SV=1) HSP 1 Score: 387.5 bits (994), Expect = 4.2e-104 Identity = 217/233 (93.13%), Postives = 222/233 (95.28%), Query Frame = 0
BLAST of IVF0024201.1 vs. ExPASy TrEMBL
Match: A0A6J1C9H2 (U-box domain-containing protein 26 OS=Momordica charantia OX=3673 GN=LOC111009618 PE=4 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 7.5e-93 Identity = 193/225 (85.78%), Postives = 205/225 (91.11%), Query Frame = 0
BLAST of IVF0024201.1 vs. ExPASy TrEMBL
Match: A0A6J1IJ47 (U-box domain-containing protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111476752 PE=4 SV=1) HSP 1 Score: 344.7 bits (883), Expect = 3.2e-91 Identity = 189/223 (84.75%), Postives = 203/223 (91.03%), Query Frame = 0
BLAST of IVF0024201.1 vs. NCBI nr
Match: XP_008466051.1 (PREDICTED: U-box domain-containing protein 26 [Cucumis melo] >KAA0038613.1 U-box domain-containing protein 26 [Cucumis melo var. makuwa] >TYK31212.1 U-box domain-containing protein 26 [Cucumis melo var. makuwa]) HSP 1 Score: 413 bits (1061), Expect = 8.41e-143 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
BLAST of IVF0024201.1 vs. NCBI nr
Match: XP_004136217.1 (U-box domain-containing protein 26 [Cucumis sativus] >KGN60328.1 hypothetical protein Csa_001353 [Cucumis sativus]) HSP 1 Score: 390 bits (1003), Expect = 5.22e-134 Identity = 215/225 (95.56%), Postives = 220/225 (97.78%), Query Frame = 0
BLAST of IVF0024201.1 vs. NCBI nr
Match: XP_038897160.1 (U-box domain-containing protein 26 [Benincasa hispida]) HSP 1 Score: 387 bits (993), Expect = 1.79e-132 Identity = 211/224 (94.20%), Postives = 217/224 (96.88%), Query Frame = 0
BLAST of IVF0024201.1 vs. NCBI nr
Match: XP_022138450.1 (U-box domain-containing protein 26 [Momordica charantia]) HSP 1 Score: 353 bits (907), Expect = 2.35e-119 Identity = 191/217 (88.02%), Postives = 203/217 (93.55%), Query Frame = 0
BLAST of IVF0024201.1 vs. NCBI nr
Match: XP_022976320.1 (U-box domain-containing protein 26 [Cucurbita maxima]) HSP 1 Score: 347 bits (891), Expect = 6.12e-117 Identity = 189/223 (84.75%), Postives = 203/223 (91.03%), Query Frame = 0
BLAST of IVF0024201.1 vs. TAIR 10
Match: AT5G11550.1 (ARM repeat superfamily protein ) HSP 1 Score: 222.6 bits (566), Expect = 3.5e-58 Identity = 130/221 (58.82%), Postives = 160/221 (72.40%), Query Frame = 0
BLAST of IVF0024201.1 vs. TAIR 10
Match: AT1G49780.1 (plant U-box 26 ) HSP 1 Score: 70.1 bits (170), Expect = 2.9e-12 Identity = 61/199 (30.65%), Postives = 99/199 (49.75%), Query Frame = 0
BLAST of IVF0024201.1 vs. TAIR 10
Match: AT3G19380.1 (plant U-box 25 ) HSP 1 Score: 64.3 bits (155), Expect = 1.6e-10 Identity = 51/164 (31.10%), Postives = 85/164 (51.83%), Query Frame = 0
BLAST of IVF0024201.1 vs. TAIR 10
Match: AT2G35930.1 (plant U-box 23 ) HSP 1 Score: 48.1 bits (113), Expect = 1.2e-05 Identity = 41/138 (29.71%), Postives = 67/138 (48.55%), Query Frame = 0
BLAST of IVF0024201.1 vs. TAIR 10
Match: AT4G16490.1 (ARM repeat superfamily protein ) HSP 1 Score: 44.3 bits (103), Expect = 1.7e-04 Identity = 43/148 (29.05%), Postives = 68/148 (45.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|