IVF0022288.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0022288.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr05: 6318066 .. 6318590 (+)
Sequence length	411
RNA-Seq Expression	IVF0022288.1
Synteny	IVF0022288.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAAGAAGGAATTGTGCTTGGGAACAAGATCTCCCATGTGGGATTAGAAGTAGACCCCGCAAAGATTAATATGGTAAGTAAATTGCCACCACCTTCAAATGTCAAGCCTTTGAGAAGCTTTTTGGGTTAAGTAGGATTTTACAGAAGATTCATTGGAGGATTTTCCCAGATCACCAAACCTCTCAATAACCTGCTATGCATCAATCAACCCTTTGACTTTGATGAGGAATGCAATTAAGCGTTTCAAACTATAAAAGACGCGTTGACCTCAACATCTATCCTTATCACGCCAAATTGGTCACAACCATTTGAACTTATGTGTGACACGAGTCATGTGGCAGTAAGGGCTATGCTGGGTCAAAAGAAGGATAAAATGATCCACCCTATCTACTATGCGAGCAAAACCCTTAACGAAGCTCAAGAGAATTATACTACCACTAAGAAGGAGCTGCTCGCAGTAGTATTTGCGATAGAAAAGTTTAGGAGCTACATTGTAGGCTCCAAAGTTAGAGCATTCTGA

mRNA sequence

ATGGTTAAAGAAGGAATTGTGCTTGGGAACAAGATCTCCCATGTGGGATTAGAAGTAGACCCCGCAAAGATTAATATGGTAAGTAAATTGCCACCACCTTCAAATGTCAAGCCTTTGAGAAGCTTTTTGGCGTTTCAAACTATAAAAGACGCGTTGACCTCAACATCTATCCTTATCACGCCAAATTGGTCACAACCATTTGAACTTATGTGTGACACGAGTCATGTGGCAGTAAGGGCTATGCTGGGTCAAAAGAAGGATAAAATGATCCACCCTATCTACTATGCGAGCAAAACCCTTAACGAAGCTCAAGAGAATTATACTACCACTAAGAAGGAGCTGCTCGCAGTAGTATTTGCGATAGAAAAGTTTAGGAGCTACATTGTAGGCTCCAAAGTTAGAGCATTCTGA

Coding sequence (CDS)

ATGGTTAAAGAAGGAATTGTGCTTGGGAACAAGATCTCCCATGTGGGATTAGAAGTAGACCCCGCAAAGATTAATATGGTAAGTAAATTGCCACCACCTTCAAATGTCAAGCCTTTGAGAAGCTTTTTGGCGTTTCAAACTATAAAAGACGCGTTGACCTCAACATCTATCCTTATCACGCCAAATTGGTCACAACCATTTGAACTTATGTGTGACACGAGTCATGTGGCAGTAAGGGCTATGCTGGGTCAAAAGAAGGATAAAATGATCCACCCTATCTACTATGCGAGCAAAACCCTTAACGAAGCTCAAGAGAATTATACTACCACTAAGAAGGAGCTGCTCGCAGTAGTATTTGCGATAGAAAAGTTTAGGAGCTACATTGTAGGCTCCAAAGTTAGAGCATTCTGA

Protein sequence

MVKEGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFLAFQTIKDALTSTSILITPNWSQPFELMCDTSHVAVRAMLGQKKDKMIHPIYYASKTLNEAQENYTTTKKELLAVVFAIEKFRSYIVGSKVRAF

Homology

[Close]

BLAST of IVF0022288.1 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-15
Identity = 48/173 (27.75%), Postives = 83/173 (47.98%), Query Frame = 0


Query: 8   LGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFL------------------------ 67
           LG  ++  G++ DP K+  +S++PPP++VK L+ FL                        
Sbjct: 327 LGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLT 386

Query: 68  -------------------------AFQTIKDALTSTSILITPNWSQPFELMCDTSHVAV 127
                                    +F  +K  L S+ IL  P +++PF L  D S+ A+
Sbjct: 387 RGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAI 446

Query: 128 RAMLGQKKDKMIHPIYYASKTLNEAQENYTTTKKELLAVVFAIEKFRSYIVGS 132
            A+L Q       PI Y S++LN+ +ENY T +KE+LA++++++  R+Y+ G+
Sbjct: 447 GAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGA 499

[Close]

BLAST of IVF0022288.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.8e-13
Identity = 50/167 (29.94%), Postives = 82/167 (49.10%), Query Frame = 0


Query: 3   KEGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFL------------------- 62
           +E   LG+ ++  G++ +P KI  + K P P+  K +++FL                   
Sbjct: 406 QETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKP 465

Query: 63  --------------------AFQTIKDALTSTSILITPNWSQPFELMCDTSHVAVRAMLG 122
                               AF+ +K  ++   IL  P++++ F L  D S VA+ A+L 
Sbjct: 466 MTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLS 525

Query: 123 QKKDKMIHPIYYASKTLNEAQENYTTTKKELLAVVFAIEKFRSYIVG 131
           Q      HP+ Y S+TLNE + NY+T +KELLA+V+A + FR Y++G
Sbjct: 526 QDG----HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLG 568

[Close]

BLAST of IVF0022288.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-11
Identity = 47/167 (28.14%), Postives = 79/167 (47.31%), Query Frame = 0


Query: 3   KEGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFL------------------- 62
           KE   LG+ ++  G++ +P K+  +   P P+  K +R+FL                   
Sbjct: 405 KEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKP 464

Query: 63  --------------------AFQTIKDALTSTSILITPNWSQPFELMCDTSHVAVRAMLG 122
                               AF+ +K  +    IL  P++ + F L  D S++A+ A+L 
Sbjct: 465 MTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLS 524

Query: 123 QKKDKMIHPIYYASKTLNEAQENYTTTKKELLAVVFAIEKFRSYIVG 131
           Q      HPI + S+TLN+ + NY+  +KELLA+V+A + FR Y++G
Sbjct: 525 QNG----HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLG 567

[Close]

BLAST of IVF0022288.1 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09
Identity = 45/175 (25.71%), Postives = 78/175 (44.57%), Query Frame = 0


Query: 8   LGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFL------------------------ 67
           LG  +S  G + DP K+  + + P P  V  +RSFL                        
Sbjct: 386 LGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDIL 445

Query: 68  -------------------------AFQTIKDALTSTSILIT-PNWSQPFELMCDTSHVA 127
                                    AFQ +++ L S  +++  P++ +PF+L  D S   
Sbjct: 446 KGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASG 505

Query: 128 VRAMLGQKKDKMIHPIYYASKTLNEAQENYTTTKKELLAVVFAIEKFRSYIVGSK 133
           + A+L Q+      PI   S+TL + ++NY T ++ELLA+V+A+ K ++++ GS+
Sbjct: 506 IGAVLSQEG----RPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSR 556

[Close]

BLAST of IVF0022288.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 44  AFQTIKDALTSTSILITPNWSQPFELMCDTSHVAVRAMLGQK-KDKMIHPIYYASKTLNE 103
           A + IK  L S  +L   ++S+   L  D S VAV A+L QK  D   +P+ Y S  +++
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744

Query: 104 AQENYTTTKKELLAVVFAIEKFRSYI 129
           AQ NY+ + KE+LA++ +++ +R Y+
Sbjct: 745 AQLNYSVSDKEMLAIIKSLKHWRHYL 770

[Close]

BLAST of IVF0022288.1 vs. ExPASy TrEMBL
Match: A0A5D3DS34 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001700 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.9e-43
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 4   EGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFLAF-----QTIKD----ALTS 63
           EGIVLG+KIS++GLEVDPAKI++VSKLPPPSNVKPLRSFL +     + IK     A   
Sbjct: 3   EGIVLGHKISNMGLEVDPAKIDVVSKLPPPSNVKPLRSFLGYVEFYRRFIKGFSQIAKPL 62

Query: 64  TSILITPNWSQPFELMCDTSHVAVRAMLGQKKDKMIHPIYYASKTLNEAQENYTTTKKEL 123
           +S+L+ P+WSQPFELMCD S V V  M GQKKDK+  PIYYA KTLNEA+ENYTT +KEL
Sbjct: 63  SSVLVAPDWSQPFELMCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKEL 122

Query: 124 LAVVFAIEKFRSYIVGSKV 134
           LA+VFAIEKFRSYIVGSKV
Sbjct: 123 LAIVFAIEKFRSYIVGSKV 141

[Close]

BLAST of IVF0022288.1 vs. ExPASy TrEMBL
Match: A0A5N6PFF2 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_11117 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 91/141 (64.54%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MVKEGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFL---------AFQTIKDA 60
           MV EGIVLG+KIS  G+EVD AKI  +SKLPPP+NV+ +RSFL         AF+ +K+ 
Sbjct: 117 MVTEGIVLGHKISQDGIEVDRAKIETISKLPPPTNVRAVRSFLGHAGEECMRAFEFLKEK 176

Query: 61  LTSTSILITPNWSQPFELMCDTSHVAVRAMLGQKKDKMIHPIYYASKTLNEAQENYTTTK 120
           L S+ ILI P+WS PFELMCD S  AV A+LGQ+KDK  HPIYYASKTL++AQ+NYTTT+
Sbjct: 177 LVSSPILIAPDWSLPFELMCDASDFAVGAVLGQRKDKHFHPIYYASKTLDDAQKNYTTTE 236

Query: 121 KELLAVVFAIEKFRSYIVGSK 133
           KELLAVV+A +KFRSY+V SK
Sbjct: 237 KELLAVVYAFDKFRSYLVLSK 257

[Close]

BLAST of IVF0022288.1 vs. ExPASy TrEMBL
Match: A0A5N6NFE7 (Reverse transcriptase OS=Mikania micrantha OX=192012 GN=E3N88_24212 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 94/170 (55.29%), Postives = 111/170 (65.29%), Query Frame = 0


Query: 1    MVKEGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFL----------------- 60
            MVKEGIVLG+KIS VG+EVD AKI  +SKLPPP+NVK +RSFL                 
Sbjct: 873  MVKEGIVLGHKISRVGIEVDKAKIETISKLPPPTNVKSIRSFLGHAGFYRRFIKDFSKIS 932

Query: 61   ---------------------AFQTIKDALTSTSILITPNWSQPFELMCDTSHVAVRAML 120
                                 AF+ +K+ L    ILI P+WS PFELMCD S  AV A+L
Sbjct: 933  RPMTQLLEKDAPFVFSEECLRAFELLKEKLVDAPILIAPDWSSPFELMCDASDFAVGAVL 992

Query: 121  GQKKDKMIHPIYYASKTLNEAQENYTTTKKELLAVVFAIEKFRSYIVGSK 133
            GQ++DK  HPIYYASKTLN+AQE+YTTT+KELLAVVFA +KFRSY+V SK
Sbjct: 993  GQRRDKHFHPIYYASKTLNDAQEHYTTTEKELLAVVFAFDKFRSYLVLSK 1042

[Close]

BLAST of IVF0022288.1 vs. ExPASy TrEMBL
Match: A0A5N6LN29 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_40523 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.6e-39
Identity = 92/168 (54.76%), Postives = 112/168 (66.67%), Query Frame = 0


Query: 1   MVKEGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFL----------------- 60
           MVKEGI+LG+KIS  G+EVD AKI  +SKLPPP+NVK +RSFL                 
Sbjct: 172 MVKEGIMLGHKISRAGIEVDKAKIETISKLPPPTNVKSIRSFLAGFYRRFIKDFSKISRP 231

Query: 61  -------------------AFQTIKDALTSTSILITPNWSQPFELMCDTSHVAVRAMLGQ 120
                              AF+ +K+ L +  ILI P+WS PFELMCD S+ AV A+LGQ
Sbjct: 232 MTQLLEKDAPFVFSEECLRAFELLKEKLVNALILIAPDWSSPFELMCDASNFAVGAVLGQ 291

Query: 121 KKDKMIHPIYYASKTLNEAQENYTTTKKELLAVVFAIEKFRSYIVGSK 133
           +++K  HPIYYASKTLN+AQE+YTTTKKELLAVVFA +KFRSY+V SK
Sbjct: 292 RREKHFHPIYYASKTLNDAQEHYTTTKKELLAVVFAFDKFRSYLVLSK 339

[Close]

BLAST of IVF0022288.1 vs. ExPASy TrEMBL
Match: A0A5N6NFS2 (Integrase catalytic domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_23359 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.4e-39
Identity = 93/170 (54.71%), Postives = 110/170 (64.71%), Query Frame = 0


Query: 1   MVKEGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFL----------------- 60
           MVKEGIVLG+KIS  G+EVD AKI  +SKLPPP+NVK +RSFL                 
Sbjct: 329 MVKEGIVLGHKISRAGIEVDKAKIETISKLPPPANVKSIRSFLGHAGFYRWFIKDFSKIS 388

Query: 61  ---------------------AFQTIKDALTSTSILITPNWSQPFELMCDTSHVAVRAML 120
                                AF+ +K+ L    ILI P+WS PFELMCD S  AV A+L
Sbjct: 389 RPMAQLLEKDAPFVFSEECLRAFELLKEKLVDAPILIAPDWSSPFELMCDASDFAVGAVL 448

Query: 121 GQKKDKMIHPIYYASKTLNEAQENYTTTKKELLAVVFAIEKFRSYIVGSK 133
           GQ++DK  HPIYYASKTLN+AQE+YTTT+KELLAVVFA +KFRSY+V SK
Sbjct: 449 GQRRDKHFHPIYYASKTLNDAQEHYTTTEKELLAVVFAFDKFRSYLVLSK 498

[Close]

BLAST of IVF0022288.1 vs. NCBI nr
Match: TYK26567.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (471), Expect = 2.18e-57
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 4   EGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFLAF-----QTIKD----ALTS 63
           EGIVLG+KIS++GLEVDPAKI++VSKLPPPSNVKPLRSFL +     + IK     A   
Sbjct: 3   EGIVLGHKISNMGLEVDPAKIDVVSKLPPPSNVKPLRSFLGYVEFYRRFIKGFSQIAKPL 62

Query: 64  TSILITPNWSQPFELMCDTSHVAVRAMLGQKKDKMIHPIYYASKTLNEAQENYTTTKKEL 123
           +S+L+ P+WSQPFELMCD S V V  M GQKKDK+  PIYYA KTLNEA+ENYTT +KEL
Sbjct: 63  SSVLVAPDWSQPFELMCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKEL 122

Query: 124 LAVVFAIEKFRSYIVGSKV 133
           LA+VFAIEKFRSYIVGSKV
Sbjct: 123 LAIVFAIEKFRSYIVGSKV 141

[Close]

BLAST of IVF0022288.1 vs. NCBI nr
Match: KAD6119846.1 (hypothetical protein E3N88_11117 [Mikania micrantha])

HSP 1 Score: 178 bits (451), Expect = 2.18e-52
Identity = 91/141 (64.54%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MVKEGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFL---------AFQTIKDA 60
           MV EGIVLG+KIS  G+EVD AKI  +SKLPPP+NV+ +RSFL         AF+ +K+ 
Sbjct: 117 MVTEGIVLGHKISQDGIEVDRAKIETISKLPPPTNVRAVRSFLGHAGEECMRAFEFLKEK 176

Query: 61  LTSTSILITPNWSQPFELMCDTSHVAVRAMLGQKKDKMIHPIYYASKTLNEAQENYTTTK 120
           L S+ ILI P+WS PFELMCD S  AV A+LGQ+KDK  HPIYYASKTL++AQ+NYTTT+
Sbjct: 177 LVSSPILIAPDWSLPFELMCDASDFAVGAVLGQRKDKHFHPIYYASKTLDDAQKNYTTTE 236

Query: 121 KELLAVVFAIEKFRSYIVGSK 132
           KELLAVV+A +KFRSY+V SK
Sbjct: 237 KELLAVVYAFDKFRSYLVLSK 257

[Close]

BLAST of IVF0022288.1 vs. NCBI nr
Match: KAA0062414.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (428), Expect = 3.32e-51
Identity = 88/130 (67.69%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 4   EGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFLAFQTIKDALTSTSILITPNW 63
           EGIVLG+KIS++GLEVDPAKI++                 AFQT+KD LTSTS+L+ P+W
Sbjct: 3   EGIVLGHKISNMGLEVDPAKIDV-----------------AFQTLKDVLTSTSVLVAPDW 62

Query: 64  SQPFELMCDTSHVAVRAMLGQKKDKMIHPIYYASKTLNEAQENYTTTKKELLAVVFAIEK 123
           SQPFELMCD S V V  M GQKKDK+  PIYYA KTLNEA+ENYTT +KELLA+VFAIEK
Sbjct: 63  SQPFELMCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEK 115

Query: 124 FRSYIVGSKV 133
           FRSYIVGSKV
Sbjct: 123 FRSYIVGSKV 115

[Close]

BLAST of IVF0022288.1 vs. NCBI nr
Match: GFB79506.1 (reverse transcriptase domain-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 171 bits (432), Expect = 1.12e-49
Identity = 85/134 (63.43%), Postives = 106/134 (79.10%), Query Frame = 0


Query: 1   MVKEGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFL--AFQTIKDALTSTSIL 60
           MVKEGIVLG+KIS  G+EVD AKI ++SKLP P+ VK +RS L  AF+T+KD LT   IL
Sbjct: 80  MVKEGIVLGHKISKKGIEVDKAKIEVISKLPHPTTVKGIRSLLGHAFRTLKDKLTKAPIL 139

Query: 61  ITPNWSQPFELMCDTSHVAVRAMLGQKKDKMIHPIYYASKTLNEAQENYTTTKKELLAVV 120
           I PNW QPFELMCD S  AV A+LGQ+ +K   PI+YASKT+N+A+ NYTTT+KE+LAVV
Sbjct: 140 IAPNWDQPFELMCDASDYAVGAILGQRINKHFRPIHYASKTMNQAETNYTTTEKEMLAVV 199

Query: 121 FAIEKFRSYIVGSK 132
           +A E FRSY++ +K
Sbjct: 200 YAFENFRSYLIMNK 213

[Close]

BLAST of IVF0022288.1 vs. NCBI nr
Match: KAA0060859.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 3.41e-49
Identity = 89/130 (68.46%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 1   MVKEGIVLGNKISHVGLEVDPAKINMVSKLPPPSNVKPLRSFLAFQTIKDALTSTSILIT 60
           MV+EGIVL +KIS   +EVDP KI++ SKLP PS+V        FQT+KDALTS  ILIT
Sbjct: 1   MVREGIVLRHKISSARIEVDPTKIDVASKLPLPSDV--------FQTLKDALTSVPILIT 60

Query: 61  PNWSQPFELMCDTSHVAVRAMLGQKKDKMIHPIYYASKTLNEAQENYTTTKKELLAVVFA 120
           P+WSQPFEL+CD     V AMLG KKDK+I+ IYYASKTLNEAQ+NYTTTKKELLAVVF+
Sbjct: 61  PDWSQPFELICDR----VMAMLGPKKDKVIYLIYYASKTLNEAQKNYTTTKKELLAVVFS 118

Query: 121 IEKFRSYIVG 130
           I+KFRSYI+ 
Sbjct: 121 IDKFRSYIIA 118

The following BLAST results are available for this feature:

BLAST of IVF0022288.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8I7P9	4.3e-15	27.75	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P04323	6.8e-13	29.94	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	4.9e-11	28.14	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10401	2.7e-09	25.71	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q9UR07	1.3e-06	36.05	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of IVF0022288.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DS34	3.9e-43	70.50	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5N6PFF2	1.1e-40	64.54	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_11117 PE=4 SV=1	[more]
A0A5N6NFE7	1.2e-39	55.29	Reverse transcriptase OS=Mikania micrantha OX=192012 GN=E3N88_24212 PE=4 SV=1	[more]
A0A5N6LN29	2.6e-39	54.76	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_40523 PE=4 SV=1	[more]
A0A5N6NFS2	3.4e-39	54.71	Integrase catalytic domain-containing protein OS=Mikania micrantha OX=192012 GN=...	[more]

BLAST of IVF0022288.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26567.1	2.18e-57	70.50	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAD6119846.1	2.18e-52	64.54	hypothetical protein E3N88_11117 [Mikania micrantha]	[more]
KAA0062414.1	3.32e-51	67.69	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
GFB79506.1	1.12e-49	63.43	reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]	[more]
KAA0060859.1	3.41e-49	68.46	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]

BLAST of IVF0022288.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.370		coord: 63..135 e-value: 2.1E-11 score: 45.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 43..131
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 43..131
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 44..133 e-value: 5.8E-30 score: 103.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..133

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0022288	IVF0022288	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0022288.1-exon	IVF0022288.1-exon-chr05:6318066..6318195	exon
IVF0022288.1-exon	IVF0022288.1-exon-chr05:6318310..6318590	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0022288.1-cds	IVF0022288.1-cds-chr05:6318066..6318195	CDS
IVF0022288.1-cds	IVF0022288.1-cds-chr05:6318310..6318590	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0022288.1	IVF0022288.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity