IVF0021094.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0021094.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr01: 26487338 .. 26487547 (-)
Sequence length165
RNA-Seq ExpressionIVF0021094.1
SyntenyIVF0021094.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTAAGGAAGGATACAAGTCACCGGTTGAGCAAGTCGTTGAAGGGCCAACGACAAGAGGACGCACTGCACGACGTTCCCTATCGTGGAAGACGATGGCGACATAGAAGAAGGTCGAAGAGCATCTTACTAAGTTGGAGGAGGGATTGGAGGAGATGCAGGCCGAAGTCAACAAGATGAGCGGGTTGATGGAAGAGTTAGTCTAA

mRNA sequence

ATGGCATCTAAGGAAGGATACAAGTCACCGGTTGAGCAAGTCGTTGAAGGGCCAACGACAAGAGGACGCACTGCACGACAGCATCTTACTAAGTTGGAGGAGGGATTGGAGGAGATGCAGGCCGAAGTCAACAAGATGAGCGGGTTGATGGAAGAGTTAGTCTAA

Coding sequence (CDS)

ATGGCATCTAAGGAAGGATACAAGTCACCGGTTGAGCAAGTCGTTGAAGGGCCAACGACAAGAGGACGCACTGCACGACAGCATCTTACTAAGTTGGAGGAGGGATTGGAGGAGATGCAGGCCGAAGTCAACAAGATGAGCGGGTTGATGGAAGAGTTAGTCTAA

Protein sequence

MASKEGYKSPVEQVVEGPTTRGRTARQHLTKLEEGLEEMQAEVNKMSGLMEELV
Homology
BLAST of IVF0021094.1 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-04
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGR---------------TARQH----LTKLEEGLEEMQA 55
          M+++EG+ SPVEQV+EGP TRGR                 R+H    LT LE+G+E++Q 
Sbjct: 1  MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

BLAST of IVF0021094.1 vs. ExPASy TrEMBL
Match: A0A5A7SPK5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00950 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-04
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 1   MASKEGYKSPVEQVVEGPTTRGR---------------TARQH----LTKLEEGLEEMQA 55
           M++KEG+ SPVEQV+EGP TRGR                 R+H    LT LE+G+E++Q 
Sbjct: 57  MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGLAVREHVDTRLTNLEQGMEDVQL 116

BLAST of IVF0021094.1 vs. ExPASy TrEMBL
Match: A0A5D3E2T1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00690 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-04
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGR---------------TARQH----LTKLEEGLEEMQA 55
          M++KEG+ SPVEQV+EGP TRGR                 R+H    LT LE+G+E++Q 
Sbjct: 1  MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGLAVREHVDTRLTNLEQGMEDVQL 60

BLAST of IVF0021094.1 vs. ExPASy TrEMBL
Match: A0A5D3D3V4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004150 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-04
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 1   MASKEGYKSPVEQVVEGPTTRGR---------------TARQH----LTKLEEGLEEMQA 55
           M+++EG+ SPVEQV+EGP TRGR               T R+H    LT LE+G+E++Q 
Sbjct: 91  MSAEEGHTSPVEQVIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQL 150

BLAST of IVF0021094.1 vs. ExPASy TrEMBL
Match: A0A5A7TFP3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006290 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-04
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 1   MASKEGYKSPVEQVVEGPTTRGR---------------TARQH----LTKLEEGLEEMQA 55
           M+++EG+ SPVEQV+EGP TRGR               T R+H    LT LE+G+E++Q 
Sbjct: 154 MSAEEGHTSPVEQVIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQL 213

BLAST of IVF0021094.1 vs. NCBI nr
Match: KAE8637433.1 (hypothetical protein CSA_004611, partial [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 4.56e-07
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGRTAR-------------------QHLTKLEEGLEEMQA 54
          MAS+EGY+SPVEQVVEGPTTRGR A+                   +    LE  LEE+Q 
Sbjct: 1  MASREGYESPVEQVVEGPTTRGRAAQRSPSRQNKATTSTTRDVVEERFATLEGKLEEVQE 60

BLAST of IVF0021094.1 vs. NCBI nr
Match: TYK30387.1 (uncharacterized protein E5676_scaffold575G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 2.01e-06
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGR---------------TARQH----LTKLEEGLEEMQA 54
          M++KEG+ SPVEQV+EGP TRGR                 R+H    LT LE+G+E++Q 
Sbjct: 1  MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGLAVREHVDTRLTNLEQGMEDVQL 60

BLAST of IVF0021094.1 vs. NCBI nr
Match: KAA0032830.1 (uncharacterized protein E6C27_scaffold708G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 2.15e-06
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 1   MASKEGYKSPVEQVVEGPTTRGR---------------TARQH----LTKLEEGLEEMQA 54
           M++KEG+ SPVEQV+EGP TRGR                 R+H    LT LE+G+E++Q 
Sbjct: 57  MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGLAVREHVDTRLTNLEQGMEDVQL 116

BLAST of IVF0021094.1 vs. NCBI nr
Match: KAA0040659.1 (uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 2.21e-06
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGR---------------TARQH----LTKLEEGLEEMQA 54
          M+++EG+ SPVEQV+EGP TRGR                 R+H    LT LE+G+E++Q 
Sbjct: 1  MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

BLAST of IVF0021094.1 vs. NCBI nr
Match: TYK18079.1 (uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 3.01e-06
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 1   MASKEGYKSPVEQVVEGPTTRGR---------------TARQH----LTKLEEGLEEMQA 54
           M+++EG+ SPVEQV+EGP TRGR               T R+H    LT LE+G+E++Q 
Sbjct: 91  MSAEEGHTSPVEQVIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQL 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7THC03.1e-0442.47Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7SPK53.1e-0443.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E2T13.1e-0443.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D3V44.1e-0443.84Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TFP34.1e-0443.84Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
KAE8637433.14.56e-0746.58hypothetical protein CSA_004611, partial [Cucumis sativus][more]
TYK30387.12.01e-0643.84uncharacterized protein E5676_scaffold575G00690 [Cucumis melo var. makuwa][more]
KAA0032830.12.15e-0643.84uncharacterized protein E6C27_scaffold708G00950 [Cucumis melo var. makuwa][more]
KAA0040659.12.21e-0642.47uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa][more]
TYK18079.13.01e-0643.84uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 29..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0021094IVF0021094gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0021094.1-exonIVF0021094.1-exon-chr01:26487338..26487423exon
IVF0021094.1-exonIVF0021094.1-exon-chr01:26487469..26487547exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0021094.1-cdsIVF0021094.1-cds-chr01:26487338..26487423CDS
IVF0021094.1-cdsIVF0021094.1-cds-chr01:26487469..26487547CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0021094.1IVF0021094.1-proteinpolypeptide