IVF0020529.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0020529.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pol protein
Location	chr06: 16140869 .. 16141108 (-)
Sequence length	240
RNA-Seq Expression	IVF0020529.2
Synteny	IVF0020529.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTGGAAATTGATGAAAACTTGAGCTATACCGAACAGCCCGTTGAGATACTGGCTAGAGAGGTGAAAACGTTGAGGAATAAGGAAATCCCTCTGGTTAAAGTCTTATGGCGGAATCACCGGATAGAAGAGGCTACGTGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGGGTAA

mRNA sequence

ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTGGAAATTGATGAAAACTTGAGCTATACCGAACAGCCCGTTGAGATACTGGCTAGAGAGGTGAAAACGTTGAGGAATAAGGAAATCCCTCTGGTTAAAGTCTTATGGCGGAATCACCGGATAGAAGAGGCTACGTGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGGGTAA

Coding sequence (CDS)

ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTGGAAATTGATGAAAACTTGAGCTATACCGAACAGCCCGTTGAGATACTGGCTAGAGAGGTGAAAACGTTGAGGAATAAGGAAATCCCTCTGGTTAAAGTCTTATGGCGGAATCACCGGATAGAAGAGGCTACGTGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGGGTAA

Protein sequence

MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEEATWEREDDMRSRYPELFEG

Homology

[Close]

BLAST of IVF0020529.2 vs. ExPASy TrEMBL
Match: A0A5A7T8G8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00730 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1    MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 60
            MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVE+LAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 1196 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1255

Query: 61   ATWEREDDMRSRYPELFEG 80
            ATWEREDDMRSRYPELFEG
Sbjct: 1256 ATWEREDDMRSRYPELFEG 1274

[Close]

BLAST of IVF0020529.2 vs. ExPASy TrEMBL
Match: A0A5A7UZZ4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00810 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-37
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 60
           MLRKYVPDPSHVVDYEPLEIDEN+SYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE
Sbjct: 474 MLRKYVPDPSHVVDYEPLEIDENMSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 533

Query: 61  ATWEREDDMRSRYPELFEG 80
           ATWEREDDMRSRYPELFEG
Sbjct: 534 ATWEREDDMRSRYPELFEG 552

[Close]

BLAST of IVF0020529.2 vs. ExPASy TrEMBL
Match: A0A5A7SSB3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28300G00010 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.1e-37
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVE+LAREVKTLRNKEIPLVKVLW+NHR+EE
Sbjct: 190 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWQNHRVEE 249

Query: 61  ATWEREDDMRSRYPELFEG 80
           ATWEREDDMRSRYPELFEG
Sbjct: 250 ATWEREDDMRSRYPELFEG 268

[Close]

BLAST of IVF0020529.2 vs. ExPASy TrEMBL
Match: A0A5A7UDB1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00190 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1    MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 60
            MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVE+LAREVKTLR+KEIPLVKVLWRNHR+EE
Sbjct: 1384 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRSKEIPLVKVLWRNHRVEE 1443

Query: 61   ATWEREDDMRSRYPELFEG 80
            ATWEREDDMRSRYPELFEG
Sbjct: 1444 ATWEREDDMRSRYPELFEG 1462

[Close]

BLAST of IVF0020529.2 vs. ExPASy TrEMBL
Match: A0A5A7TGX4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00100 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1    MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 60
            MLRKYVPDPSHVVDYEPLEIDENLSY EQPVE+LAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 1474 MLRKYVPDPSHVVDYEPLEIDENLSYAEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1533

Query: 61   ATWEREDDMRSRYPELFEG 80
            ATWEREDDMRSRYPELFEG
Sbjct: 1534 ATWEREDDMRSRYPELFEG 1552

[Close]

BLAST of IVF0020529.2 vs. NCBI nr
Match: KAA0043066.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (400), Expect = 9.54e-49
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1  MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 60
          MLRKYVPDPSHVVDYEPLEIDENLSY EQPVE+LAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 1  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60

Query: 61 ATWEREDDMRSRYPELFEG 79
          ATWEREDDMR RYPELFEG
Sbjct: 61 ATWEREDDMRFRYPELFEG 79

[Close]

BLAST of IVF0020529.2 vs. NCBI nr
Match: KAA0059496.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 2.15e-48
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE
Sbjct: 84  MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 143

Query: 61  ATWEREDDMRSRYPELFEG 79
           ATWEREDDMRSRYPEL EG
Sbjct: 144 ATWEREDDMRSRYPELSEG 162

[Close]

BLAST of IVF0020529.2 vs. NCBI nr
Match: KAA0054732.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 2.15e-48
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVE+LAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 84  MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 143

Query: 61  ATWEREDDMRSRYPELFE 78
           ATWEREDDMRSRYPELFE
Sbjct: 144 ATWEREDDMRSRYPELFE 161

[Close]

BLAST of IVF0020529.2 vs. NCBI nr
Match: KAA0053367.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 2.15e-48
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVE+LAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 84  MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 143

Query: 61  ATWEREDDMRSRYPELFE 78
           ATWEREDDMRSRYPELFE
Sbjct: 144 ATWEREDDMRSRYPELFE 161

[Close]

BLAST of IVF0020529.2 vs. NCBI nr
Match: KAA0059750.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (402), Expect = 2.20e-48
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSY EQP+E+LAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPIEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWEREDDMRSRYPELFEG 79
           ATWEREDDMRSRYP+LFEG
Sbjct: 111 ATWEREDDMRSRYPDLFEG 129

The following BLAST results are available for this feature:

BLAST of IVF0020529.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020529.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T8G8	3.1e-37	97.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]
A0A5A7UZZ4	3.1e-37	98.73	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00810 PE...	[more]
A0A5A7SSB3	9.1e-37	96.20	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28300G00010 ...	[more]
A0A5A7UDB1	1.2e-36	96.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10...	[more]
A0A5A7TGX4	1.2e-36	96.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]

BLAST of IVF0020529.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043066.1	9.54e-49	94.94	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059496.1	2.15e-48	98.73	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054732.1	2.15e-48	97.44	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053367.1	2.15e-48	97.44	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059750.1	2.20e-48	93.67	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0020529.2 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..77
None	No IPR available	PANTHER	PTHR46148:SF33	OS05G0296332 PROTEIN	coord: 1..77
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 7..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0020529	IVF0020529	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0020529.2-exon	IVF0020529.2-exon-chr06:16140869..16141108	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0020529.2-cds	IVF0020529.2-cds-chr06:16140869..16141108	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0020529.2	IVF0020529.2-protein	polypeptide