IVF0015221.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACATATTGTGACGACATTGACGACGTAGACGAGGGAGACTCTGCATACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCTGAATCGATGTTCACTGATTGGCAGTTGCGTAATGCTTAG ATGACATATTGTGACGACATTGACGACGTAGACGAGGGAGACTCTGCATACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCTGAATCGATGTTCACTGATTGGCAGTTGCGTAATGCTTAG ATGACATATTGTGACGACATTGACGACGTAGACGAGGGAGACTCTGCATACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCTGAATCGATGTTCACTGATTGGCAGTTGCGTAATGCTTAG MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA Homology
BLAST of IVF0015221.1 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 1.8e-23 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of IVF0015221.1 vs. ExPASy TrEMBL
Match: A0A5A7VK86 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001570 PE=3 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21 Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0
BLAST of IVF0015221.1 vs. ExPASy TrEMBL
Match: A0A5D3CUG9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00180 PE=3 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21 Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0
BLAST of IVF0015221.1 vs. ExPASy TrEMBL
Match: A0A5A7TW41 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00210 PE=3 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21 Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0
BLAST of IVF0015221.1 vs. ExPASy TrEMBL
Match: A0A5A7SNH9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001990 PE=3 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 3.7e-21 Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0
BLAST of IVF0015221.1 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 118 bits (295), Expect = 1.91e-33 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of IVF0015221.1 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 108 bits (270), Expect = 5.32e-29 Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0
BLAST of IVF0015221.1 vs. NCBI nr
Match: XP_016899482.1 (PREDICTED: uncharacterized protein LOC107990543 [Cucumis melo]) HSP 1 Score: 110 bits (275), Expect = 1.11e-28 Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0
BLAST of IVF0015221.1 vs. NCBI nr
Match: TYK22655.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 105 bits (262), Expect = 2.09e-28 Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0
BLAST of IVF0015221.1 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 107 bits (266), Expect = 2.16e-28 Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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