IVF0015221 (gene) Melon (IVF77) v1

Overview


Name	IVF0015221
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr12: 19027279 .. 19027446 (-)
RNA-Seq Expression	IVF0015221
Synteny	IVF0015221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGTGACGACATTGACGACGTAGACGAGGGAGACTCTGCATACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCTGAATCGATGTTCACTGATTGGCAGTTGCGTAATGCTTAG

mRNA sequence

ATGACATATTGTGACGACATTGACGACGTAGACGAGGGAGACTCTGCATACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCTGAATCGATGTTCACTGATTGGCAGTTGCGTAATGCTTAG

Coding sequence (CDS)

ATGACATATTGTGACGACATTGACGACGTAGACGAGGGAGACTCTGCATACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCTGAATCGATGTTCACTGATTGGCAGTTGCGTAATGCTTAG

Protein sequence

MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA

Homology

[Close]

BLAST of IVF0015221 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 56
          MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0015221 vs. ExPASy TrEMBL
Match: A0A5A7VK86 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001570 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 56
           MTYC+D+DDVDEGDS YATTTASEDIHYIETTNEWSQWRDEL ESMFTDWQL NA
Sbjct: 246 MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 300

[Close]

BLAST of IVF0015221 vs. ExPASy TrEMBL
Match: A0A5D3CUG9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00180 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 56
           MTYC D+DDVDEGDS YATT ASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
Sbjct: 261 MTYCKDVDDVDEGDSTYATTIASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 315

[Close]

BLAST of IVF0015221 vs. ExPASy TrEMBL
Match: A0A5A7TW41 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00210 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 56
           MTYC D+DDVDEGDS YATT ASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
Sbjct: 261 MTYCKDVDDVDEGDSTYATTIASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 315

[Close]

BLAST of IVF0015221 vs. ExPASy TrEMBL
Match: A0A5A7SNH9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001990 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 56
           MTYCDD+ DVDEGDSAYATTTASEDIHYIET NEWSQWRDELAESMFTDW+LRNA
Sbjct: 246 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 300

[Close]

BLAST of IVF0015221 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 1.91e-33
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55
          MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0015221 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 5.32e-29
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55
           MTYCDDIDD DEGDS YATTTASEDI YIETTNEWSQWRD+LAESMFT+WQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

[Close]

BLAST of IVF0015221 vs. NCBI nr
Match: XP_016899482.1 (PREDICTED: uncharacterized protein LOC107990543 [Cucumis melo])

HSP 1 Score: 110 bits (275), Expect = 1.11e-28
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55
           MTYCDD+ DVDEGDSAYATTTASEDIHYIET NEWSQWRDELAESMFTDW+LRNA
Sbjct: 143 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 197

[Close]

BLAST of IVF0015221 vs. NCBI nr
Match: TYK22655.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 2.09e-28
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55
          MTYCDD+DD DE DS YATTTASEDI YIETTNEWSQWRDEL ESMFTDWQLRNA
Sbjct: 1  MTYCDDVDDGDEEDSMYATTTASEDIQYIETTNEWSQWRDELVESMFTDWQLRNA 55

[Close]

BLAST of IVF0015221 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 2.16e-28
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55
           MTYC+D+DD DEGDS YATTTASEDI YIETTNEWSQWRD+LAESMFTDWQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

The following BLAST results are available for this feature:

BLAST of IVF0015221 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDZ0	1.8e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VK86	2.2e-21	90.91	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CUG9	2.2e-21	92.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TW41	2.2e-21	92.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SNH9	3.7e-21	92.73	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of IVF0015221 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054051.1	1.91e-33	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p...	[more]
KAA0062284.1	5.32e-29	90.91	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_016899482.1	1.11e-28	92.73	PREDICTED: uncharacterized protein LOC107990543 [Cucumis melo]	[more]
TYK22655.1	2.09e-28	89.09	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05336.1	2.16e-28	87.27	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015221 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015221.1	IVF0015221.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding