IVF0014072.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0014072.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr01: 22036756 .. 22037005 (-)
Sequence length204
RNA-Seq ExpressionIVF0014072.1
SyntenyIVF0014072.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAACGAGAAGGTGATTTCTATAAGGCTACGTGAATGTGTTTTCGTAGCGCCACCTATGGTTGTTAGGGGATTTTAGGATTCAAAGAGGCTGTGATCAAAGATCTGAGAACCTAAGCCTAGGTGAGCATATAAATGGAGGATTGCGATATGGCTTTGGGCCTAGATTAACCCATGATGGGTGGCTCTATATGCACATAGGAGCAAATATGGAGGTTGTTATTGTGGTAGGTGCTAAGTATGTGTGA

mRNA sequence

ATGGTGAACGAGAAGGTGATTTCTATAAGGCTACGTGAATGTGTTTTCGTAGCGCCACCTATGGTTAACCTAAGCCTAGGTGAGCATATAAATGGAGGATTGCGATATGGCTTTGGGCCTAGATTAACCCATGATGGGTGGCTCTATATGCACATAGGAGCAAATATGGAGGTTGTTATTGTGGTAGGTGCTAAGTATGTGTGA

Coding sequence (CDS)

ATGGTGAACGAGAAGGTGATTTCTATAAGGCTACGTGAATGTGTTTTCGTAGCGCCACCTATGGTTAACCTAAGCCTAGGTGAGCATATAAATGGAGGATTGCGATATGGCTTTGGGCCTAGATTAACCCATGATGGGTGGCTCTATATGCACATAGGAGCAAATATGGAGGTTGTTATTGTGGTAGGTGCTAAGTATGTGTGA

Protein sequence

MVNEKVISIRLRECVFVAPPMVNLSLGEHINGGLRYGFGPRLTHDGWLYMHIGANMEVVIVVGAKYV
Homology
BLAST of IVF0014072.1 vs. ExPASy TrEMBL
Match: A0A5A7UUF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001110 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 1  MVNEKVISIRLRECVFVAPPMV---------------NLSLGEHINGGLRYGFGPRLTHD 60
          M+N+KVI +RL+ECV V P  V               NLSLGE ++GGLRYGFGP LTH 
Sbjct: 3  MMNKKVIFLRLQECVSVVPLKVVSGFGTERGYDWRSENLSLGEDMDGGLRYGFGPNLTHG 62

Query: 61 GWLYMHIGANMEVVIVVGAKYV 68
           WLY+HIGA+ME+V VV ++Y+
Sbjct: 63 QWLYVHIGADMEIVTVVVSRYL 84

BLAST of IVF0014072.1 vs. ExPASy TrEMBL
Match: A0A5D3DQP8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00840 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-07
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 0

Query: 23 NLSLGEHINGGLRYGFGPRLTHDGWLYMHIGANMEVVIVV 63
          NLSLGE ++GGLRYG GP L H  WLY+HIGA+M+VV +V
Sbjct: 57 NLSLGEDMDGGLRYGIGPSLIHGAWLYVHIGADMDVVTIV 96

BLAST of IVF0014072.1 vs. NCBI nr
Match: KAA0058838.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK11255.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 8.91e-20
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 1  MVNEKVISIRLRECVFVAPPMV---------------NLSLGEHINGGLRYGFGPRLTHD 60
          M+N+KVI +RL+ECV V P  V               NLSLGE ++GGLRYGFGP LTH 
Sbjct: 3  MMNKKVIFLRLQECVSVVPLKVVSGFGTERGYDWRSENLSLGEDMDGGLRYGFGPNLTHG 62

Query: 61 GWLYMHIGANMEVVIVVGAKY 66
           WLY+HIGA+ME+V VV ++Y
Sbjct: 63 QWLYVHIGADMEIVTVVVSRY 83

BLAST of IVF0014072.1 vs. NCBI nr
Match: TYK25868.1 (hypothetical protein E5676_scaffold436G00840 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.23e-10
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 0

Query: 23 NLSLGEHINGGLRYGFGPRLTHDGWLYMHIGANMEVVIVV 62
          NLSLGE ++GGLRYG GP L H  WLY+HIGA+M+VV +V
Sbjct: 57 NLSLGEDMDGGLRYGIGPSLIHGAWLYVHIGADMDVVTIV 96

BLAST of IVF0014072.1 vs. NCBI nr
Match: XP_031740114.1 (uncharacterized protein LOC105435219 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.38e-09
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0

Query: 23 NLSLGEHINGGLRYGFGPRLTHDGWLYMHIGAN 55
          NLSL E ++GGLRYGF P LTH GWLY+HIGA+
Sbjct: 66 NLSLSEDMDGGLRYGFRPSLTHCGWLYVHIGAD 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UUF74.1e-1453.66Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DQP82.9e-0767.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0058838.18.91e-2054.32retrotransposon protein [Cucumis melo var. makuwa] >TYK11255.1 retrotransposon p... [more]
TYK25868.11.23e-1067.50hypothetical protein E5676_scaffold436G00840 [Cucumis melo var. makuwa][more]
XP_031740114.12.38e-0972.73uncharacterized protein LOC105435219 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0014072IVF0014072gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0014072.1-exonIVF0014072.1-exon-chr01:22036756..22036893exon
IVF0014072.1-exonIVF0014072.1-exon-chr01:22036940..22037005exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0014072.1-cdsIVF0014072.1-cds-chr01:22036756..22036893CDS
IVF0014072.1-cdsIVF0014072.1-cds-chr01:22036940..22037005CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0014072.1IVF0014072.1-proteinpolypeptide