IVF0011754.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGGAAAGCCCAAATTTTGGTTAAACGTTCAATTGCTTCGTCGGTCTCCTCTCTTTTATCTCTCGCGTCTGCTGGATTCAGATCTAGAAGAAGGAACTTGGACGAAGAAGAGTAAAACCATGGCAGCACCAGATCATTTGTTCAATCTCAGAAATAATTTCTATTTGGGTGCGTATCAGGCAGCCATTAACAACAGTGATCTCCCCAATCTCTCCCCCGATGACGCAATCGAGAGGGATTCCATTGTTTTCCGCTCTTACATTGCCCTTGGCAGTTATCAGGTCTGTTCCCGCACATTACCCTGTCTGTAAGTATATTGATGCTTGGTTTGAATTTGTTTTGAAACTCTGTCCCTACTCTTTCAGCTAGCGATCAGCGAGATCGATTCATCCGCCCCGACGCCTCTTCAAGCCGTCAAATTGCTCGCTCTGTATCTGTCTGATCCCGGCAACAAGGTTTTATCCGTGGATCTAGACCCCTTTTTAGCTGATTACCTTAATTGGGATATAAATTATTTTTTGTAATTCTTAAAATTTCAATTATATCATTGGGTCACACATTTCTAAGCTATGTTACTTCATTTTATAAATTCAAACCATACTTGACACCGATCTAGAACGAACTACTTGAAATCTCAAGAATCTTTTACAGGGAATTCAAGGTTGATGACTCCATTTTATTGACTAGTAACGTCTGCTACCTTTTCATTTGGGGGGTGTGAGTGATGGTGGATGAGGGGAAAGCAATGCATAATCTCGCTAATGAACGGATAGAAGTTTTTAGTATTTCGTCATAGAAATCTGGGCATAATTGGATGAATATTAAAAAGTCATGTAACGTGTGAATAAGCTAAGCAGTTCAAACCAACCTAAAAGATTTCAGATTTTACCACTTGTACTGGACGATCGGGGTTCAGAAGAAAATGAAGACGTTTTTCTTCTTCATGAGGGCAGAGTAATTATAGTTTCTTTACCGATGAATTCATTGAATGTTGTAGGAATCTACCATCGCGAGTCTACAGGAATGGCTATCAGATCCAGCCATTGGAAACAATCCTACTTTGAGGCTAATTGCCGGAATCATATTCATGCATGAGCAAGATTATAATGAAGCCTTGAAACACACAAATGCTGGAGGAACCATGGAATTGTAAGTCTCGTTTTGAACGTTTTACCAGTATTCATAACTTTCATCGTTATGGTTTCAATGTTTAGATGCATTACGTAGGTTTGATTTTTTTTTCCTTTCCCTTGTTTTTCCCCCTCCCCATATTGGGGGGTACGTAGATTGCGAAGATATACAAATACTATTATTTATTTATTAAATATCTTATTTTTCTAGATATAAAACTTGTAACCACTCGACAGAACTGGTAATTTTAATTTAGTTCACTATTTAACTACAAACTGGCAATGGTAGACCAGTGTCGTATTTTACTCTCTTCCATGTAGCCACCATTCAATTATCTGTCTTGCTTTCTTTCTGATTGTCTGTTTTTCTGGGGAGGAATACAGTACCATCGTCACATATTGAAAACCAATGTTGTCACATCCAGAAAAATGAAAGAATTTATAAGGAAATACAGGCAACGGATATAAAAAAGAAGCCAAACCAATCTTAACTAGCTATTAGAAAATAAAATAAAAGAACTCCAATCCAATGCAATTAAACATAGTGATTAATTTTAAAAATCTTTAGAGTCTAGCATCCAAAGGGGGACTAAAGGATTTAATTTGTAATTGAACTTTTCTGTTTTTTACTGTATTTTTTTTTTCATCTTATGTGCCTAATCCAGATGCAAATAGTTGATTTAGGGAAGATATTTGTGGGACTGGAAGTGCATACTGTAATTATTTCTAGCCTGATTTTTTTTCCTTGCAGGCATGCGCTGAATGTTCAAATATTTCTTAAGATGCACAGGTCAGATTATGCAGAGAGACAGCTGCGAGTCATGCAACAGATTGATGAGGATCACACATTAACACAACTTGCAAATGCTTGGTTAAATCTAGCAGTGGTTTGTAGTTTATATCTTCATTATTCTGAAGGAAGGAATGTATAATTTTTGGGGCAAGTCTCATTATTCTGTAATTTTTTGCTTGACCAGGGTGGTTCCAAGATACAAGAAGCATATCTCATCTTCCAAGATTTCTCCGAAAAGTATCCCATGACAAGCTTGATTTTGAATGGAAGGGCTGTCTGCTGCATGCATATGGGAAACTTTGATGAAGCCGAGACACTTCTTCTTGAAGCACTGAACAAGGTAGTTTTAGGATGACTCTGCGTTTGATTACTTATACTGTATAACTGAAATAGCTTATCTGTGGGAATCAAGATTATCGGCGCAGATTAGTGACTGATAAAAAAAAAAGGGAAAAAAACATATCTTTGTAACTTGGTTGTCTTCAATGAGATTCCAATTTGGTCAAAGTTTCAGATAGATTGAACATTTTCAGGACAACTTAGGATGCAAGTATCATCTATGAATTTATGATTGTAGATAAAAAGTTTCTTTGTTTGTTATCACAGGATGCAAAAGATCCCGAAACTCTGGCCAATTTAGTTGTATGCAATCTTCACCTTGGCAAACCAACTTCTCGTTTTCTCAGGTAATGGGTGGGGATCGATGACCAGAAATCCTTTTCTTCCTTACCTTCTCTTCTTTTATATTTTGGTTGTTTGGTTGTTTAGTTGCAATACTTTGTACACTCTGCATCTTTGTGGGAATTGTTGACTGAAGGTAGTTTATTAGCAAGTGAATGTTAATACTATGTTCACCTAAATTCTTGAAAGTTTTTTAAAGGGAGGTTGGAGGGACTTTTTGAGAGTATTATTTTGAAGTGATTTTTGAAGAAAGTAAACCCATTTTCTAAAAATATTTATAGGGGATTTAATGTTGGTTTGCGTATTGGGGACTGATATTTGAGATTCTTCTATTGTACCGTAGGTCTCGTTATGCTCATTTAATATCTATATTTAGAAAATTTTTTGCCCTACTCCTGTCTTGCATCTTCATATTTAATATTTAATGTTTACCTGGAAATACGTTGTTTGTTTTTATTTTAACTGCTGTTATGGCAAATCCATCCACAAGTTGGATTAAAATTTTATCTTACCTTGGCTGCTATTGCTAACAAACTTGCCACATATTTTCAGCCAATTGAAACTTTCGCATCCCGACCACATGCTTGTCAAACGCATCTCGACTGCTGAAGAAAACTTTGATAGAGCTGTTCAATCTGTTGCTTAGAGAACCCCTTGCTGCCTTCGAAAGATGATGAATGATGTTTACTAGTGTTAAACGACAGTTGGTCTTCAACCTGTGGCCGTTCACTGCCAAGGGGCTGTTGATTTTGCTCAAGTTATTTGGCTATTGAATATCAAATCGAACCAAATGTTTGACATTAGAAATTATAACGCATAATTCTGGTCATTTTTTGTACTGAGCTTCCTGGATGGTGATCCATACTTATTCTTTACCATTTTCATTTGTTTAAGCCTTTGGTTAAAGACGATGGCCTTTCAATTTTCACTGTTTAATATTATAGTATTATACCACAAGCCACAGCCAGTGTTTAATATATCAGACGTTATGTTGA AAGGAAAGCCCAAATTTTGGTTAAACGTTCAATTGCTTCGTCGGTCTCCTCTCTTTTATCTCTCGCGTCTGCTGGATTCAGATCTAGAAGAAGGAACTTGGACGAAGAAGAGTAAAACCATGGCAGCACCAGATCATTTGTTCAATCTCAGAAATAATTTCTATTTGGGTGCGTATCAGGCAGCCATTAACAACAGTGATCTCCCCAATCTCTCCCCCGATGACGCAATCGAGAGGGATTCCATTGTTTTCCGCTCTTACATTGCCCTTGGCAGTTATCAGCTAGCGATCAGCGAGATCGATTCATCCGCCCCGACGCCTCTTCAAGCCGTCAAATTGCTCGCTCTGTATCTGTCTGATCCCGGCAACAAGGAATCTACCATCGCGAGTCTACAGGAATGGCTATCAGATCCAGCCATTGGAAACAATCCTACTTTGAGGCTAATTGCCGGAATCATATTCATGCATGAGCAAGATTATAATGAAGCCTTGAAACACACAAATGCTGGAGGAACCATGGAATTGCATGCGCTGAATGTTCAAATATTTCTTAAGATGCACAGGTCAGATTATGCAGAGAGACAGCTGCGAGTCATGCAACAGATTGATGAGGATCACACATTAACACAACTTGCAAATGCTTGGTTAAATCTAGCAGTGGGTGGTTCCAAGATACAAGAAGCATATCTCATCTTCCAAGATTTCTCCGAAAAGTATCCCATGACAAGCTTGATTTTGAATGGAAGGGCTGTCTGCTGCATGCATATGGGAAACTTTGATGAAGCCGAGACACTTCTTCTTGAAGCACTGAACAAGGATGCAAAAGATCCCGAAACTCTGGCCAATTTAGTTGTATGCAATCTTCACCTTGGCAAACCAACTTCTCGTTTTCTCAGCCAATTGAAACTTTCGCATCCCGACCACATGCTTGTCAAACGCATCTCGACTGCTGAAGAAAACTTTGATAGAGCTGTTCAATCTGTTGCTTAGAGAACCCCTTGCTGCCTTCGAAAGATGATGAATGATGTTTACTAGTGTTAAACGACAGTTGGTCTTCAACCTGTGGCCGTTCACTGCCAAGGGGCTGTTGATTTTGCTCAAGTTATTTGGCTATTGAATATCAAATCGAACCAAATGTTTGACATTAGAAATTATAACGCATAATTCTGGTCATTTTTTGTACTGAGCTTCCTGGATGGTGATCCATACTTATTCTTTACCATTTTCATTTGTTTAAGCCTTTGGTTAAAGACGATGGCCTTTCAATTTTCACTGTTTAATATTATAGTATTATACCACAAGCCACAGCCAGTGTTTAATATATCAGACGTTATGTTGA ATGGCAGCACCAGATCATTTGTTCAATCTCAGAAATAATTTCTATTTGGGTGCGTATCAGGCAGCCATTAACAACAGTGATCTCCCCAATCTCTCCCCCGATGACGCAATCGAGAGGGATTCCATTGTTTTCCGCTCTTACATTGCCCTTGGCAGTTATCAGCTAGCGATCAGCGAGATCGATTCATCCGCCCCGACGCCTCTTCAAGCCGTCAAATTGCTCGCTCTGTATCTGTCTGATCCCGGCAACAAGGAATCTACCATCGCGAGTCTACAGGAATGGCTATCAGATCCAGCCATTGGAAACAATCCTACTTTGAGGCTAATTGCCGGAATCATATTCATGCATGAGCAAGATTATAATGAAGCCTTGAAACACACAAATGCTGGAGGAACCATGGAATTGCATGCGCTGAATGTTCAAATATTTCTTAAGATGCACAGGTCAGATTATGCAGAGAGACAGCTGCGAGTCATGCAACAGATTGATGAGGATCACACATTAACACAACTTGCAAATGCTTGGTTAAATCTAGCAGTGGGTGGTTCCAAGATACAAGAAGCATATCTCATCTTCCAAGATTTCTCCGAAAAGTATCCCATGACAAGCTTGATTTTGAATGGAAGGGCTGTCTGCTGCATGCATATGGGAAACTTTGATGAAGCCGAGACACTTCTTCTTGAAGCACTGAACAAGGATGCAAAAGATCCCGAAACTCTGGCCAATTTAGTTGTATGCAATCTTCACCTTGGCAAACCAACTTCTCGTTTTCTCAGCCAATTGAAACTTTCGCATCCCGACCACATGCTTGTCAAACGCATCTCGACTGCTGAAGAAAACTTTGATAGAGCTGTTCAATCTGTTGCTTAG MAAPDHLFNLRNNFYLGAYQAAINNSDLPNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTPLQAVKLLALYLSDPGNKESTIASLQEWLSDPAIGNNPTLRLIAGIIFMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRVMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGRAVCCMHMGNFDEAETLLLEALNKDAKDPETLANLVVCNLHLGKPTSRFLSQLKLSHPDHMLVKRISTAEENFDRAVQSVA Homology
BLAST of IVF0011754.1 vs. ExPASy Swiss-Prot
Match: Q9SA78 (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana OX=3702 GN=At1g30630 PE=2 SV=1) HSP 1 Score: 495.0 bits (1273), Expect = 5.9e-139 Identity = 236/289 (81.66%), Postives = 272/289 (94.12%), Query Frame = 0
BLAST of IVF0011754.1 vs. ExPASy Swiss-Prot
Match: O64748 (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana OX=3702 GN=At2g34840 PE=2 SV=1) HSP 1 Score: 495.0 bits (1273), Expect = 5.9e-139 Identity = 240/288 (83.33%), Postives = 270/288 (93.75%), Query Frame = 0
BLAST of IVF0011754.1 vs. ExPASy Swiss-Prot
Match: Q9MAX6 (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPE1 PE=2 SV=1) HSP 1 Score: 485.7 bits (1249), Expect = 3.6e-136 Identity = 236/289 (81.66%), Postives = 269/289 (93.08%), Query Frame = 0
BLAST of IVF0011754.1 vs. ExPASy Swiss-Prot
Match: P0C541 (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0644700 PE=3 SV=1) HSP 1 Score: 401.7 bits (1031), Expect = 6.8e-111 Identity = 199/293 (67.92%), Postives = 243/293 (82.94%), Query Frame = 0
BLAST of IVF0011754.1 vs. ExPASy Swiss-Prot
Match: A2XY73 (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica OX=39946 GN=H0413E07.10 PE=3 SV=2) HSP 1 Score: 400.2 bits (1027), Expect = 2.0e-110 Identity = 199/293 (67.92%), Postives = 243/293 (82.94%), Query Frame = 0
BLAST of IVF0011754.1 vs. ExPASy TrEMBL
Match: A0A5A7UFG1 (Coatomer subunit epsilon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009940 PE=3 SV=1) HSP 1 Score: 578.6 bits (1490), Expect = 1.5e-161 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
BLAST of IVF0011754.1 vs. ExPASy TrEMBL
Match: A0A1S3AYY0 (Coatomer subunit epsilon OS=Cucumis melo OX=3656 GN=LOC103484285 PE=3 SV=1) HSP 1 Score: 576.2 bits (1484), Expect = 7.4e-161 Identity = 288/289 (99.65%), Postives = 288/289 (99.65%), Query Frame = 0
BLAST of IVF0011754.1 vs. ExPASy TrEMBL
Match: A0A0A0KIF7 (Coatomer subunit epsilon OS=Cucumis sativus OX=3659 GN=Csa_6G526290 PE=3 SV=1) HSP 1 Score: 567.0 bits (1460), Expect = 4.5e-158 Identity = 283/289 (97.92%), Postives = 286/289 (98.96%), Query Frame = 0
BLAST of IVF0011754.1 vs. ExPASy TrEMBL
Match: A0A6J1CYM5 (Coatomer subunit epsilon OS=Momordica charantia OX=3673 GN=LOC111015783 PE=3 SV=1) HSP 1 Score: 555.1 bits (1429), Expect = 1.8e-154 Identity = 276/289 (95.50%), Postives = 282/289 (97.58%), Query Frame = 0
BLAST of IVF0011754.1 vs. ExPASy TrEMBL
Match: A0A6J1ELM6 (Coatomer subunit epsilon OS=Cucurbita moschata OX=3662 GN=LOC111433698 PE=3 SV=1) HSP 1 Score: 554.3 bits (1427), Expect = 3.0e-154 Identity = 275/288 (95.49%), Postives = 282/288 (97.92%), Query Frame = 0
BLAST of IVF0011754.1 vs. NCBI nr
Match: KAA0052455.1 (coatomer subunit epsilon-1-like [Cucumis melo var. makuwa] >TYK13367.1 coatomer subunit epsilon-1-like [Cucumis melo var. makuwa]) HSP 1 Score: 577 bits (1487), Expect = 1.29e-207 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
BLAST of IVF0011754.1 vs. NCBI nr
Match: XP_008439506.1 (PREDICTED: coatomer subunit epsilon-1-like [Cucumis melo]) HSP 1 Score: 575 bits (1481), Expect = 1.06e-206 Identity = 288/289 (99.65%), Postives = 288/289 (99.65%), Query Frame = 0
BLAST of IVF0011754.1 vs. NCBI nr
Match: XP_004134547.1 (coatomer subunit epsilon-1 [Cucumis sativus] >KGN49495.1 hypothetical protein Csa_003881 [Cucumis sativus]) HSP 1 Score: 565 bits (1457), Expect = 4.84e-203 Identity = 283/289 (97.92%), Postives = 286/289 (98.96%), Query Frame = 0
BLAST of IVF0011754.1 vs. NCBI nr
Match: XP_038883808.1 (coatomer subunit epsilon-1-like [Benincasa hispida]) HSP 1 Score: 560 bits (1442), Expect = 9.37e-201 Identity = 281/289 (97.23%), Postives = 284/289 (98.27%), Query Frame = 0
BLAST of IVF0011754.1 vs. NCBI nr
Match: XP_022146629.1 (coatomer subunit epsilon-2 [Momordica charantia]) HSP 1 Score: 553 bits (1426), Expect = 2.57e-198 Identity = 276/289 (95.50%), Postives = 282/289 (97.58%), Query Frame = 0
BLAST of IVF0011754.1 vs. TAIR 10
Match: AT1G30630.1 (Coatomer epsilon subunit ) HSP 1 Score: 495.0 bits (1273), Expect = 4.2e-140 Identity = 236/289 (81.66%), Postives = 272/289 (94.12%), Query Frame = 0
BLAST of IVF0011754.1 vs. TAIR 10
Match: AT2G34840.1 (Coatomer epsilon subunit ) HSP 1 Score: 495.0 bits (1273), Expect = 4.2e-140 Identity = 240/288 (83.33%), Postives = 270/288 (93.75%), Query Frame = 0
BLAST of IVF0011754.1 vs. TAIR 10
Match: AT2G34840.2 (Coatomer epsilon subunit ) HSP 1 Score: 373.2 bits (957), Expect = 1.8e-103 Identity = 179/214 (83.64%), Postives = 203/214 (94.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|