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IVF0007852.2 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTTTCCGTGGAAAGCAACAGGTAAAAGGCAAATAAGGTCGAAGTTGAACCCACTTGCCCATAAAATTCGGTTTGTGTAATTAGAATTAGTATTTAAGGAAACCATCAGAAAATGGCAGCAAAAAAGAGAAAGAAAATTTGAGAGTGTGTAGGAGGGGGAGTTGTGATTTTGATTTGATTTTTTAAGGAGGATGGGGTCTGGATCCAATTGGACGGCGAAACAGAACAAAGTGTTTGAAAATGCATTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAATCTGGCAAGAGCCGTCGGGGGCAAGACGGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGGACCTGCCGCCAGGGGATTTTGCTTTCTTGACCAAGAACAGAGGTAACTAAAGTAAAATGCCCCAATTTTTTTTTAATTTTTAATTTTTAATTCGACTTTCAATTTTTGTGTAGTGTATTTCTAAAATCCACTTGGTAATTATAATTTGTTTTCTTGTTTTGAAAAATTAATAACAACAACGAGGACAACAACAAAACTTTTGCACTTTCTCTGTTTCCCAAATGTAGCCAAAGTTTTAATGAGTATTTCAAGGAAAAACTACTCAGAAATATCAATATTTGAACTTTTGTTGTCAAATTTATTATTTGTAATAATATTTATATATATATATATATATATATATATATATAAAAAATCAAAGTCCAAGTTATGGTTTATTTAAAATTAGTCAAAAATTGATTTAAATTGTAATGTAATTTAATTATGGTTTATGTGAATAATGCAGGATGAGGAGTCTACAATTGAATTGAAGTAGGAATGTGGGAAGACCAGAGTTCTATATTTCTATCTCTCCATTAACTTTTTCTCCACCTAAATTTCCAACCAACAAATATTTATGAAATAATGTAGCTTACATAGTTTTAATTTTCTTCACCCATCTTCAATTGTAATTTCTAGTTTTTATCTTTTATCAACTCTCCTCCAAATTTGTTTTATATTAAATAAATACCCTTTAATATAGTTTAAAACACATAAAATTGGAGGAAAGGATCACCGGGGTTGAGTTTACTATGTTGTTGAACTCCAAATAATATT GTTTTCCGTGGAAAGCAACAGGTAAAAGGCAAATAAGGTCGAAGTTGAACCCACTTGCCCATAAAATTCGGTTTGTGTAATTAGAATTAGTATTTAAGGAAACCATCAGAAAATGGCAGCAAAAAAGAGAAAGAAAATTTGAGAGTGTGTAGGAGGGGGAGTTGTGATTTTGATTTGATTTTTTAAGGAGGATGGGGTCTGGATCCAATTGGACGGCGAAACAGAACAAAGTGTTTGAAAATGCATTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAATCTGGCAAGAGCCGTCGGGGGCAAGACGGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGGACCTGCCGCCAGGGGATTTTGCTTTCTTGACCAAGAACAGAGGATGAGGAGTCTACAATTGAATTGAAGTAGGAATGTGGGAAGACCAGAGTTCTATATTTCTATCTCTCCATTAACTTTTTCTCCACCTAAATTTCCAACCAACAAATATTTATGAAATAATGTAGCTTACATAGTTTTAATTTTCTTCACCCATCTTCAATTGTAATTTCTAGTTTTTATCTTTTATCAACTCTCCTCCAAATTTGTTTTATATTAAATAAATACCCTTTAATATAGTTTAAAACACATAAAATTGGAGGAAAGGATCACCGGGGTTGAGTTTACTATGTTGTTGAACTCCAAATAATATT ATGGGGTCTGGATCCAATTGGACGGCGAAACAGAACAAAGTGTTTGAAAATGCATTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAATCTGGCAAGAGCCGTCGGGGGCAAGACGGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGGACCTGCCGCCAGGGGATTTTGCTTTCTTGACCAAGAACAGAGGATGAGGAGTCTACAATTGAATTGA MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN Homology
BLAST of IVF0007852.2 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 1.5e-27 Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 0
BLAST of IVF0007852.2 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 6.4e-26 Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 0
BLAST of IVF0007852.2 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 5.4e-25 Identity = 54/92 (58.70%), Postives = 70/92 (76.09%), Query Frame = 0
BLAST of IVF0007852.2 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 7.0e-25 Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 0
BLAST of IVF0007852.2 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 4.6e-24 Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 0
BLAST of IVF0007852.2 vs. ExPASy TrEMBL
Match: A0A0A0LGK8 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 1.9e-44 Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 0
BLAST of IVF0007852.2 vs. ExPASy TrEMBL
Match: A0A5D3D7Z0 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00440 PE=4 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 7.0e-44 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of IVF0007852.2 vs. ExPASy TrEMBL
Match: A0A1S3CPA0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 7.0e-44 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of IVF0007852.2 vs. ExPASy TrEMBL
Match: A0A6J1CC55 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 2.8e-40 Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 0
BLAST of IVF0007852.2 vs. ExPASy TrEMBL
Match: A0A6J1FM85 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 4.9e-37 Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0
BLAST of IVF0007852.2 vs. NCBI nr
Match: XP_038905673.1 (protein RADIALIS-like 3 [Benincasa hispida]) HSP 1 Score: 188 bits (478), Expect = 3.51e-60 Identity = 88/94 (93.62%), Postives = 93/94 (98.94%), Query Frame = 0
BLAST of IVF0007852.2 vs. NCBI nr
Match: XP_004147867.1 (protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_001999 [Cucumis sativus]) HSP 1 Score: 187 bits (474), Expect = 1.43e-59 Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 0
BLAST of IVF0007852.2 vs. NCBI nr
Match: XP_008465612.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK19652.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa]) HSP 1 Score: 185 bits (470), Expect = 4.70e-59 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of IVF0007852.2 vs. NCBI nr
Match: XP_022138113.1 (protein RADIALIS-like 3 [Momordica charantia]) HSP 1 Score: 173 bits (438), Expect = 1.01e-53 Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 0
BLAST of IVF0007852.2 vs. NCBI nr
Match: XP_022941099.1 (protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo] >KAG6608538.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037861.1 Protein RADIALIS-like 1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 162 bits (410), Expect = 8.32e-50 Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0
BLAST of IVF0007852.2 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 ) HSP 1 Score: 123.2 bits (308), Expect = 1.1e-28 Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 0
BLAST of IVF0007852.2 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 117.9 bits (294), Expect = 4.5e-27 Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 0
BLAST of IVF0007852.2 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 ) HSP 1 Score: 111.7 bits (278), Expect = 3.2e-25 Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 0
BLAST of IVF0007852.2 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 ) HSP 1 Score: 110.2 bits (274), Expect = 9.4e-25 Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0
BLAST of IVF0007852.2 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 ) HSP 1 Score: 104.0 bits (258), Expect = 6.8e-23 Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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