IVF0007195.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0007195.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr06: 23412410 .. 23412808 (+)
Sequence length	399
RNA-Seq Expression	IVF0007195.1
Synteny	IVF0007195.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAATCAGTACTGACTGGAAGGGAGCTACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAACCTGAGATCACCTGGACAAAGGAAGTAGATGAAGAGTCTCTTGGAAACTTGAGGGCTCTAAATGCGCTTTTCAATGGTATAAACCATAATGTCTTCAAACTTATCAATACATGTACCTCAGCGAAGGAAGCCTGGAATATTCTGGAAGTTACTTATGAAGGAACCTCTAAAGTCAAAGTATTAAGACTTCAGATCCTAACTTCACGATTTGAAGCACTCAAGATAAACGATGATGAAACTATAGCGAAATTCAATGTTTGGATGCTGGATTTGGTCAATGAATCTTTTGCCATTTGCGAAAAAATCGCTAAATCCAAGATGGTGTAG

mRNA sequence

ATGTTGGAATCAGTACTGACTGGAAGGGAGCTACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAACCTGAGATCACCTGGACAAAGGAAGTAGATGAAGAGTCTCTTGGAAACTTGAGGGCTCTAAATGCGCTTTTCAATGGTATAAACCATAATGTCTTCAAACTTATCAATACATGTACCTCAGCGAAGGAAGCCTGGAATATTCTGGAAGTTACTTATGAAGGAACCTCTAAAGTCAAAGTATTAAGACTTCAGATCCTAACTTCACGATTTGAAGCACTCAAGATAAACGATGATGAAACTATAGCGAAATTCAATGTTTGGATGCTGGATTTGGTCAATGAATCTTTTGCCATTTGCGAAAAAATCGCTAAATCCAAGATGGTGTAG

Coding sequence (CDS)

ATGTTGGAATCAGTACTGACTGGAAGGGAGCTACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAACCTGAGATCACCTGGACAAAGGAAGTAGATGAAGAGTCTCTTGGAAACTTGAGGGCTCTAAATGCGCTTTTCAATGGTATAAACCATAATGTCTTCAAACTTATCAATACATGTACCTCAGCGAAGGAAGCCTGGAATATTCTGGAAGTTACTTATGAAGGAACCTCTAAAGTCAAAGTATTAAGACTTCAGATCCTAACTTCACGATTTGAAGCACTCAAGATAAACGATGATGAAACTATAGCGAAATTCAATGTTTGGATGCTGGATTTGGTCAATGAATCTTTTGCCATTTGCGAAAAAATCGCTAAATCCAAGATGGTGTAG

Protein sequence

MLESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKSKMV

Homology

[Close]

BLAST of IVF0007195.1 vs. ExPASy TrEMBL
Match: A0A5D3CDY8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G00030 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 3   ESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 62
           +SVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC
Sbjct: 14  KSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 73

Query: 63  TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 122
           TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI
Sbjct: 74  TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 133

Query: 123 CEKIAKSKM 132
           CEKIAKSKM
Sbjct: 134 CEKIAKSKM 142

[Close]

BLAST of IVF0007195.1 vs. ExPASy TrEMBL
Match: A0A5A7UZ81 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G001460 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.9e-40
Identity = 88/123 (71.54%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 10  ELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTCTSAKEAW 69
           E PSIKD  GKT  KPEITW KE DE SLGN RALNALFNG++ +VFKLINTCTS K+ W
Sbjct: 2   EPPSIKDETGKTIFKPEITWIKEEDEASLGNSRALNALFNGVDQSVFKLINTCTSTKKTW 61

Query: 70  NILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKS 129
           N+LEV YEGTS VKV RLQILTSRFEALK+ ++ETI +FNV +LD  NESFA+ E I +S
Sbjct: 62  NMLEVAYEGTSIVKVSRLQILTSRFEALKMVEEETIVEFNVRVLDFANESFALGENIPES 121

Query: 130 KMV 133
           KMV
Sbjct: 122 KMV 124

[Close]

BLAST of IVF0007195.1 vs. ExPASy TrEMBL
Match: A0A5A7SVY3 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00220 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.5e-39
Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 3   ESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 62
           ++++ G E PS KD AGK TLK EITW+K+ DE + GN RALNA+FNG++ N+FK INTC
Sbjct: 48  KAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTC 107

Query: 63  TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 122
             AKEAWNILE  YEGTSKVK+ +LQIL+S+FEA+K+ +DETI +FNV +LDL NESFA+
Sbjct: 108 LFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLANESFAL 167

Query: 123 CEKIAKSKMV 133
            EK+  +K V
Sbjct: 168 SEKLTNTKQV 177

[Close]

BLAST of IVF0007195.1 vs. ExPASy TrEMBL
Match: A0A1S3CKP5 (uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.5e-39
Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 3   ESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 62
           ++++ G E PS KD AGK TLK EITW+K+ DE + GN RALNA+FNG++ N+FK INTC
Sbjct: 48  KAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTC 107

Query: 63  TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 122
             AKEAWNILE  YEGTSKVK+ +LQIL+S+FEA+K+ +DETI +FNV +LDL NESFA+
Sbjct: 108 LFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLANESFAL 167

Query: 123 CEKIAKSKMV 133
            EK+  +K V
Sbjct: 168 SEKLTNTKQV 177

[Close]

BLAST of IVF0007195.1 vs. ExPASy TrEMBL
Match: A0A5A7U4G8 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001030 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.3e-39
Identity = 88/103 (85.44%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 30  TKEVDEESLGNLRALNALFNGINHNVFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQI 89
           TKE DEESL N RALNALFNG++ NVFKLINTCTSAKEAWNILEV YEGTSKVKV RLQI
Sbjct: 84  TKEEDEESLENTRALNALFNGVDWNVFKLINTCTSAKEAWNILEVAYEGTSKVKVSRLQI 143

Query: 90  LTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKSKMV 133
           LTSRFEALK+NDDETIAKFNV +LDL NESF + EKIAKSKMV
Sbjct: 144 LTSRFEALKMNDDETIAKFNVRVLDLANESFTLGEKIAKSKMV 186

[Close]

BLAST of IVF0007195.1 vs. NCBI nr
Match: KAA0038855.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 255 bits (651), Expect = 4.11e-84
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 3   ESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 62
           +SVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC
Sbjct: 14  KSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 73

Query: 63  TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 122
           TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI
Sbjct: 74  TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 133

Query: 123 CEKIAKSKM 131
           CEKIAKSKM
Sbjct: 134 CEKIAKSKM 142

[Close]

BLAST of IVF0007195.1 vs. NCBI nr
Match: KAA0060354.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 5.63e-53
Identity = 88/123 (71.54%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 10  ELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTCTSAKEAW 69
           E PSIKD  GKT  KPEITW KE DE SLGN RALNALFNG++ +VFKLINTCTS K+ W
Sbjct: 2   EPPSIKDETGKTIFKPEITWIKEEDEASLGNSRALNALFNGVDQSVFKLINTCTSTKKTW 61

Query: 70  NILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKS 129
           N+LEV YEGTS VKV RLQILTSRFEALK+ ++ETI +FNV +LD  NESFA+ E I +S
Sbjct: 62  NMLEVAYEGTSIVKVSRLQILTSRFEALKMVEEETIVEFNVRVLDFANESFALGENIPES 121

Query: 130 KMV 132
           KMV
Sbjct: 122 KMV 124

[Close]

BLAST of IVF0007195.1 vs. NCBI nr
Match: KAA0035422.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (434), Expect = 9.50e-51
Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 3   ESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 62
           ++++ G E PS KD AGK TLK EITW+K+ DE + GN RALNA+FNG++ N+FK INTC
Sbjct: 48  KAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTC 107

Query: 63  TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 122
             AKEAWNILE  YEGTSKVK+ +LQIL+S+FEA+K+ +DETI +FNV +LDL NESFA+
Sbjct: 108 LFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLANESFAL 167

Query: 123 CEKIAKSKMV 132
            EK+  +K V
Sbjct: 168 SEKLTNTKQV 177

[Close]

BLAST of IVF0007195.1 vs. NCBI nr
Match: KAA0050148.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK06404.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (432), Expect = 9.71e-51
Identity = 88/103 (85.44%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 30  TKEVDEESLGNLRALNALFNGINHNVFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQI 89
           TKE DEESL N RALNALFNG++ NVFKLINTCTSAKEAWNILEV YEGTSKVKV RLQI
Sbjct: 84  TKEEDEESLENTRALNALFNGVDWNVFKLINTCTSAKEAWNILEVAYEGTSKVKVSRLQI 143

Query: 90  LTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKSKMV 132
           LTSRFEALK+NDDETIAKFNV +LDL NESF + EKIAKSKMV
Sbjct: 144 LTSRFEALKMNDDETIAKFNVRVLDLANESFTLGEKIAKSKMV 186

[Close]

BLAST of IVF0007195.1 vs. NCBI nr
Match: TYK29881.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (420), Expect = 4.26e-50
Identity = 87/128 (67.97%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 5   VLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTCTS 64
           VL G EL S KD   K  LKP+ITWTKE DE SLGN  ALNALFN ++ NVFK+ NT TS
Sbjct: 9   VLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTS 68

Query: 65  AKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAICE 124
           AKEAWNILEV YEGTSK+KV +LQILT RFEALK+  +ETI +FNV +LDL NE F + E
Sbjct: 69  AKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAKEETIEEFNVRVLDLANEPFTLRE 128

Query: 125 KIAKSKMV 132
           KI+ SKMV
Sbjct: 129 KISDSKMV 136

The following BLAST results are available for this feature:

BLAST of IVF0007195.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007195.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDY8	1.7e-64	99.22	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G...	[more]
A0A5A7UZ81	3.9e-40	71.54	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G0...	[more]
A0A5A7SVY3	2.5e-39	62.31	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CKP5	2.5e-39	62.31	uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=...	[more]
A0A5A7U4G8	4.3e-39	85.44	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of IVF0007195.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038855.1	4.11e-84	99.22	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [...	[more]
KAA0060354.1	5.63e-53	71.54	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0035422.1	9.50e-51	62.31	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase...	[more]
KAA0050148.1	9.71e-51	85.44	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK06404.1 gag-proteinase...	[more]
TYK29881.1	4.26e-50	67.97	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0007195.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 41..129 e-value: 8.6E-12 score: 45.0
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 24..118
None	No IPR available	PANTHER	PTHR34676:SF4	OS06G0684500 PROTEIN	coord: 24..118

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0007195	IVF0007195	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0007195.1-exon	IVF0007195.1-exon-chr06:23412410..23412808	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0007195.1-cds	IVF0007195.1-cds-chr06:23412410..23412808	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0007195.1	IVF0007195.1-protein	polypeptide