Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGAATCAGTACTGACTGGAAGGGAGCTACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAACCTGAGATCACCTGGACAAAGGAAGTAGATGAAGAGTCTCTTGGAAACTTGAGGGCTCTAAATGCGCTTTTCAATGGTATAAACCATAATGTCTTCAAACTTATCAATACATGTACCTCAGCGAAGGAAGCCTGGAATATTCTGGAAGTTACTTATGAAGGAACCTCTAAAGTCAAAGTATTAAGACTTCAGATCCTAACTTCACGATTTGAAGCACTCAAGATAAACGATGATGAAACTATAGCGAAATTCAATGTTTGGATGCTGGATTTGGTCAATGAATCTTTTGCCATTTGCGAAAAAATCGCTAAATCCAAGATGGTGTAG
mRNA sequence
ATGTTGGAATCAGTACTGACTGGAAGGGAGCTACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAACCTGAGATCACCTGGACAAAGGAAGTAGATGAAGAGTCTCTTGGAAACTTGAGGGCTCTAAATGCGCTTTTCAATGGTATAAACCATAATGTCTTCAAACTTATCAATACATGTACCTCAGCGAAGGAAGCCTGGAATATTCTGGAAGTTACTTATGAAGGAACCTCTAAAGTCAAAGTATTAAGACTTCAGATCCTAACTTCACGATTTGAAGCACTCAAGATAAACGATGATGAAACTATAGCGAAATTCAATGTTTGGATGCTGGATTTGGTCAATGAATCTTTTGCCATTTGCGAAAAAATCGCTAAATCCAAGATGGTGTAG
Coding sequence (CDS)
ATGTTGGAATCAGTACTGACTGGAAGGGAGCTACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAACCTGAGATCACCTGGACAAAGGAAGTAGATGAAGAGTCTCTTGGAAACTTGAGGGCTCTAAATGCGCTTTTCAATGGTATAAACCATAATGTCTTCAAACTTATCAATACATGTACCTCAGCGAAGGAAGCCTGGAATATTCTGGAAGTTACTTATGAAGGAACCTCTAAAGTCAAAGTATTAAGACTTCAGATCCTAACTTCACGATTTGAAGCACTCAAGATAAACGATGATGAAACTATAGCGAAATTCAATGTTTGGATGCTGGATTTGGTCAATGAATCTTTTGCCATTTGCGAAAAAATCGCTAAATCCAAGATGGTGTAG
Protein sequence
MLESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKSKMV
Homology
BLAST of IVF0007195 vs. ExPASy TrEMBL
Match:
A0A5D3CDY8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G00030 PE=4 SV=1)
HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0
Query: 3 ESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 62
+SVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC
Sbjct: 14 KSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 73
Query: 63 TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 122
TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI
Sbjct: 74 TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 133
Query: 123 CEKIAKSKM 132
CEKIAKSKM
Sbjct: 134 CEKIAKSKM 142
BLAST of IVF0007195 vs. ExPASy TrEMBL
Match:
A0A5A7UZ81 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G001460 PE=4 SV=1)
HSP 1 Score: 174.1 bits (440), Expect = 3.9e-40
Identity = 88/123 (71.54%), Postives = 100/123 (81.30%), Query Frame = 0
Query: 10 ELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTCTSAKEAW 69
E PSIKD GKT KPEITW KE DE SLGN RALNALFNG++ +VFKLINTCTS K+ W
Sbjct: 2 EPPSIKDETGKTIFKPEITWIKEEDEASLGNSRALNALFNGVDQSVFKLINTCTSTKKTW 61
Query: 70 NILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKS 129
N+LEV YEGTS VKV RLQILTSRFEALK+ ++ETI +FNV +LD NESFA+ E I +S
Sbjct: 62 NMLEVAYEGTSIVKVSRLQILTSRFEALKMVEEETIVEFNVRVLDFANESFALGENIPES 121
Query: 130 KMV 133
KMV
Sbjct: 122 KMV 124
BLAST of IVF0007195 vs. ExPASy TrEMBL
Match:
A0A5A7SVY3 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00220 PE=4 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 2.5e-39
Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 0
Query: 3 ESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 62
++++ G E PS KD AGK TLK EITW+K+ DE + GN RALNA+FNG++ N+FK INTC
Sbjct: 48 KAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTC 107
Query: 63 TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 122
AKEAWNILE YEGTSKVK+ +LQIL+S+FEA+K+ +DETI +FNV +LDL NESFA+
Sbjct: 108 LFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLANESFAL 167
Query: 123 CEKIAKSKMV 133
EK+ +K V
Sbjct: 168 SEKLTNTKQV 177
BLAST of IVF0007195 vs. ExPASy TrEMBL
Match:
A0A1S3CKP5 (uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=4 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 2.5e-39
Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 0
Query: 3 ESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 62
++++ G E PS KD AGK TLK EITW+K+ DE + GN RALNA+FNG++ N+FK INTC
Sbjct: 48 KAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTC 107
Query: 63 TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 122
AKEAWNILE YEGTSKVK+ +LQIL+S+FEA+K+ +DETI +FNV +LDL NESFA+
Sbjct: 108 LFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLANESFAL 167
Query: 123 CEKIAKSKMV 133
EK+ +K V
Sbjct: 168 SEKLTNTKQV 177
BLAST of IVF0007195 vs. ExPASy TrEMBL
Match:
A0A5A7U4G8 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001030 PE=4 SV=1)
HSP 1 Score: 170.6 bits (431), Expect = 4.3e-39
Identity = 88/103 (85.44%), Postives = 93/103 (90.29%), Query Frame = 0
Query: 30 TKEVDEESLGNLRALNALFNGINHNVFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQI 89
TKE DEESL N RALNALFNG++ NVFKLINTCTSAKEAWNILEV YEGTSKVKV RLQI
Sbjct: 84 TKEEDEESLENTRALNALFNGVDWNVFKLINTCTSAKEAWNILEVAYEGTSKVKVSRLQI 143
Query: 90 LTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKSKMV 133
LTSRFEALK+NDDETIAKFNV +LDL NESF + EKIAKSKMV
Sbjct: 144 LTSRFEALKMNDDETIAKFNVRVLDLANESFTLGEKIAKSKMV 186
BLAST of IVF0007195 vs. NCBI nr
Match:
KAA0038855.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 255 bits (651), Expect = 4.11e-84
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0
Query: 3 ESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 62
+SVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC
Sbjct: 14 KSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 73
Query: 63 TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 122
TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI
Sbjct: 74 TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 133
Query: 123 CEKIAKSKM 131
CEKIAKSKM
Sbjct: 134 CEKIAKSKM 142
BLAST of IVF0007195 vs. NCBI nr
Match:
KAA0060354.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 174 bits (441), Expect = 5.63e-53
Identity = 88/123 (71.54%), Postives = 100/123 (81.30%), Query Frame = 0
Query: 10 ELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTCTSAKEAW 69
E PSIKD GKT KPEITW KE DE SLGN RALNALFNG++ +VFKLINTCTS K+ W
Sbjct: 2 EPPSIKDETGKTIFKPEITWIKEEDEASLGNSRALNALFNGVDQSVFKLINTCTSTKKTW 61
Query: 70 NILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKS 129
N+LEV YEGTS VKV RLQILTSRFEALK+ ++ETI +FNV +LD NESFA+ E I +S
Sbjct: 62 NMLEVAYEGTSIVKVSRLQILTSRFEALKMVEEETIVEFNVRVLDFANESFALGENIPES 121
Query: 130 KMV 132
KMV
Sbjct: 122 KMV 124
BLAST of IVF0007195 vs. NCBI nr
Match:
KAA0035422.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 171 bits (434), Expect = 9.50e-51
Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 0
Query: 3 ESVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTC 62
++++ G E PS KD AGK TLK EITW+K+ DE + GN RALNA+FNG++ N+FK INTC
Sbjct: 48 KAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTC 107
Query: 63 TSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAI 122
AKEAWNILE YEGTSKVK+ +LQIL+S+FEA+K+ +DETI +FNV +LDL NESFA+
Sbjct: 108 LFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLANESFAL 167
Query: 123 CEKIAKSKMV 132
EK+ +K V
Sbjct: 168 SEKLTNTKQV 177
BLAST of IVF0007195 vs. NCBI nr
Match:
KAA0050148.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK06404.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 171 bits (432), Expect = 9.71e-51
Identity = 88/103 (85.44%), Postives = 93/103 (90.29%), Query Frame = 0
Query: 30 TKEVDEESLGNLRALNALFNGINHNVFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQI 89
TKE DEESL N RALNALFNG++ NVFKLINTCTSAKEAWNILEV YEGTSKVKV RLQI
Sbjct: 84 TKEEDEESLENTRALNALFNGVDWNVFKLINTCTSAKEAWNILEVAYEGTSKVKVSRLQI 143
Query: 90 LTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKSKMV 132
LTSRFEALK+NDDETIAKFNV +LDL NESF + EKIAKSKMV
Sbjct: 144 LTSRFEALKMNDDETIAKFNVRVLDLANESFTLGEKIAKSKMV 186
BLAST of IVF0007195 vs. NCBI nr
Match:
TYK29881.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 166 bits (420), Expect = 4.26e-50
Identity = 87/128 (67.97%), Postives = 99/128 (77.34%), Query Frame = 0
Query: 5 VLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVFKLINTCTS 64
VL G EL S KD K LKP+ITWTKE DE SLGN ALNALFN ++ NVFK+ NT TS
Sbjct: 9 VLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTS 68
Query: 65 AKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAICE 124
AKEAWNILEV YEGTSK+KV +LQILT RFEALK+ +ETI +FNV +LDL NE F + E
Sbjct: 69 AKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAKEETIEEFNVRVLDLANEPFTLRE 128
Query: 125 KIAKSKMV 132
KI+ SKMV
Sbjct: 129 KISDSKMV 136
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CDY8 | 1.7e-64 | 99.22 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G... | [more] |
A0A5A7UZ81 | 3.9e-40 | 71.54 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G0... | [more] |
A0A5A7SVY3 | 2.5e-39 | 62.31 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
A0A1S3CKP5 | 2.5e-39 | 62.31 | uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=... | [more] |
A0A5A7U4G8 | 4.3e-39 | 85.44 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
Match Name | E-value | Identity | Description | |
KAA0038855.1 | 4.11e-84 | 99.22 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [... | [more] |
KAA0060354.1 | 5.63e-53 | 71.54 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0035422.1 | 9.50e-51 | 62.31 | gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase... | [more] |
KAA0050148.1 | 9.71e-51 | 85.44 | gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK06404.1 gag-proteinase... | [more] |
TYK29881.1 | 4.26e-50 | 67.97 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |