IVF0006677.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0006677.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Zinc finger protein ZPR1-like protein
Location	chr04: 14198670 .. 14198852 (-)
Sequence length	183
RNA-Seq Expression	IVF0006677.1
Synteny	IVF0006677.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCATTCTCGACGTCGCGAGGTGTTTCGGCATAAGGTCCGTCGGGAAAGAGGTATTCCCGATGCCACCTTTGCCAACGTTTTTTTAGGCGTCGGGAGAGGCTTTCCGACGCCGTACCAACACGGCATTGGGAAATCCTCTCCCGACGCGGTTCTCCCGACATTCTTCTCGACACCGTGA

mRNA sequence

ATGAGGCATTCTCGACGTCGCGAGGTGTTTCGGCATAAGGTCCGTCGGGAAAGAGGTATTCCCGATGCCACCTTTGCCAACGTTTTTTTAGGCGTCGGGAGAGGCTTTCCGACGCCGTACCAACACGGCATTGGGAAATCCTCTCCCGACGCGGTTCTCCCGACATTCTTCTCGACACCGTGA

Coding sequence (CDS)

ATGAGGCATTCTCGACGTCGCGAGGTGTTTCGGCATAAGGTCCGTCGGGAAAGAGGTATTCCCGATGCCACCTTTGCCAACGTTTTTTTAGGCGTCGGGAGAGGCTTTCCGACGCCGTACCAACACGGCATTGGGAAATCCTCTCCCGACGCGGTTCTCCCGACATTCTTCTCGACACCGTGA

Protein sequence

MRHSRRREVFRHKVRRERGIPDATFANVFLGVGRGFPTPYQHGIGKSSPDAVLPTFFSTP

Homology

[Close]

BLAST of IVF0006677.1 vs. ExPASy TrEMBL
Match: A0A5D3DH90 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00380 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 30/65 (46.15%), Postives = 34/65 (52.31%), Query Frame = 0


Query: 13  KVRRERGIPDATFA--------NVF---------LGVGRGFPTPYQHGIGKSSPDAVLPT 61
           K RR+RG PD             VF         L +   FPT YQHG+GK+SPDA LPT
Sbjct: 99  KKRRKRGFPDVEICVGIGCIGNEVFPTQPMSTHILALREAFPTSYQHGVGKASPDAFLPT 158

[Close]

BLAST of IVF0006677.1 vs. NCBI nr
Match: KAA0049798.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK23067.1 zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 1.04e-06
Identity = 30/65 (46.15%), Postives = 34/65 (52.31%), Query Frame = 0


Query: 13  KVRRERGIPDATFA--------NVF---------LGVGRGFPTPYQHGIGKSSPDAVLPT 60
           K RR+RG PD             VF         L +   FPT YQHG+GK+SPDA LPT
Sbjct: 99  KKRRKRGFPDVEICVGIGCIGNEVFPTQPMSTHILALREAFPTSYQHGVGKASPDAFLPT 158

The following BLAST results are available for this feature:

BLAST of IVF0006677.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006677.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DH90	1.2e-04	46.15	Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of IVF0006677.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049798.1	1.04e-06	46.15	zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK23067.1 zin...	[more]

BLAST of IVF0006677.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0006677	IVF0006677	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0006677.1-exon	IVF0006677.1-exon-chr04:14198670..14198852	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0006677.1-cds	IVF0006677.1-cds-chr04:14198670..14198852	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0006677.1	IVF0006677.1-protein	polypeptide