IVF0006677 (gene) Melon (IVF77) v1

Overview
NameIVF0006677
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionZinc finger protein ZPR1-like protein
Locationchr04: 14198670 .. 14198852 (-)
RNA-Seq ExpressionIVF0006677
SyntenyIVF0006677
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATTCTCGACGTCGCGAGGTGTTTCGGCATAAGGTCCGTCGGGAAAGAGGTATTCCCGATGCCACCTTTGCCAACGTTTTTTTAGGCGTCGGGAGAGGCTTTCCGACGCCGTACCAACACGGCATTGGGAAATCCTCTCCCGACGCGGTTCTCCCGACATTCTTCTCGACACCGTGA

mRNA sequence

ATGAGGCATTCTCGACGTCGCGAGGTGTTTCGGCATAAGGTCCGTCGGGAAAGAGGTATTCCCGATGCCACCTTTGCCAACGTTTTTTTAGGCGTCGGGAGAGGCTTTCCGACGCCGTACCAACACGGCATTGGGAAATCCTCTCCCGACGCGGTTCTCCCGACATTCTTCTCGACACCGTGA

Coding sequence (CDS)

ATGAGGCATTCTCGACGTCGCGAGGTGTTTCGGCATAAGGTCCGTCGGGAAAGAGGTATTCCCGATGCCACCTTTGCCAACGTTTTTTTAGGCGTCGGGAGAGGCTTTCCGACGCCGTACCAACACGGCATTGGGAAATCCTCTCCCGACGCGGTTCTCCCGACATTCTTCTCGACACCGTGA

Protein sequence

MRHSRRREVFRHKVRRERGIPDATFANVFLGVGRGFPTPYQHGIGKSSPDAVLPTFFSTP
Homology
BLAST of IVF0006677 vs. ExPASy TrEMBL
Match: A0A5D3DH90 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00380 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 30/65 (46.15%), Postives = 34/65 (52.31%), Query Frame = 0

Query: 13  KVRRERGIPDATFA--------NVF---------LGVGRGFPTPYQHGIGKSSPDAVLPT 61
           K RR+RG PD             VF         L +   FPT YQHG+GK+SPDA LPT
Sbjct: 99  KKRRKRGFPDVEICVGIGCIGNEVFPTQPMSTHILALREAFPTSYQHGVGKASPDAFLPT 158

BLAST of IVF0006677 vs. NCBI nr
Match: KAA0049798.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK23067.1 zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 1.04e-06
Identity = 30/65 (46.15%), Postives = 34/65 (52.31%), Query Frame = 0

Query: 13  KVRRERGIPDATFA--------NVF---------LGVGRGFPTPYQHGIGKSSPDAVLPT 60
           K RR+RG PD             VF         L +   FPT YQHG+GK+SPDA LPT
Sbjct: 99  KKRRKRGFPDVEICVGIGCIGNEVFPTQPMSTHILALREAFPTSYQHGVGKASPDAFLPT 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DH901.2e-0446.15Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
Match NameE-valueIdentityDescription
KAA0049798.11.04e-0646.15zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK23067.1 zin... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006677.1IVF0006677.1mRNA