IVF0004855.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0004855.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Methyltransferase-related protein
Location	chr08: 23351424 .. 23352061 (-)
Sequence length	638
RNA-Seq Expression	IVF0004855.1
Synteny	IVF0004855.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAGAAACAAAGCATGAAGCAGTCAACCATCGCCCGCCCAAACAAAGTCAATTAACACAATTCCCAAAGCTCATCAATTCAATTACGCGTTCTTCCCCTATTTCAATTCAACTTTATAAAACTTGAAAACACCCTAATCCACTACTCTTCCAATTTCTATCCCCAAAATCCCTTTCTTCCATCTCATAATTTCCCCAAATTTTCACTTCTCCGATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCGATATATTCCAAGCGACTGAAGCTCCCGATAAATCGGCGCCACAAAACGAGAATCGGAGCGTGAGGGAGGACGGATTTGGAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGGAATATGAACGAATCGATTCTCAACAAGAACAAGCAGGTTAATTAAGGAAGATTGGGAGTAAATTTCGTTTTGTTGATTCTTTTAATTTGAGTGTGTTGTTGGAATTGGAATTGGAAATGGGTGTTTCTTGATCCGATGGAGATTGAAATGTTC

mRNA sequence

CCCAAGAAACAAAGCATGAAGCAGTCAACCATCGCCCGCCCAAACAAAGTCAATTAACACAATTCCCAAAGCTCATCAATTCAATTACGCGTTCTTCCCCTATTTCAATTCAACTTTATAAAACTTGAAAACACCCTAATCCACTACTCTTCCAATTTCTATCCCCAAAATCCCTTTCTTCCATCTCATAATTTCCCCAAATTTTCACTTCTCCGATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCGATATATTCCAAGCGACTGAAGCTCCCGATAAATCGGCGCCACAAAACGAGAATCGGAGCGTGAGGGAGGACGGATTTGGAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGGAATATGAACGAATCGATTCTCAACAAGAACAAGCAGGTTAATTAAGGAAGATTGGGAGTAAATTTCGTTTTGTTGATTCTTTTAATTTGAGTGTGTTGTTGGAATTGGAATTGGAAATGGGTGTTTCTTGATCCGATGGAGATTGAAATGTTC

Coding sequence (CDS)

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCGATATATTCCAAGCGACTGAAGCTCCCGATAAATCGGCGCCACAAAACGAGAATCGGAGCGTGAGGGAGGACGGATTTGGAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGGAATATGAACGAATCGATTCTCAACAAGAACAAGCAGGTTAATTAA

Protein sequence

MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRSVREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN

Homology

[Close]

BLAST of IVF0004855.1 vs. ExPASy TrEMBL
Match: A0A5A7V0V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00360 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
           MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN 105
           VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN 104

[Close]

BLAST of IVF0004855.1 vs. ExPASy TrEMBL
Match: A0A1S3B5E4 (uncharacterized protein LOC103485982 OS=Cucumis melo OX=3656 GN=LOC103485982 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
           MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN 105
           VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN 104

[Close]

BLAST of IVF0004855.1 vs. ExPASy TrEMBL
Match: A0A0A0KWN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192100 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.7e-33
Identity = 83/103 (80.58%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
           MCPLRFIL+FLSAILAGYFAWRSA         SSSSSSSDIFQATEA DKSAP+NENRS
Sbjct: 1   MCPLRFILLFLSAILAGYFAWRSA---------SSSSSSSDIFQATEASDKSAPENENRS 60

Query: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 104
             ED  GV RMVE GFWTFVDMASGRFLWRN+N SILNKNKQV
Sbjct: 61  GTEDRLGVNRMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQV 94

[Close]

BLAST of IVF0004855.1 vs. ExPASy TrEMBL
Match: A0A6J1DRJ4 (uncharacterized protein LOC111023174 OS=Momordica charantia OX=3673 GN=LOC111023174 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 55/95 (57.89%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
          MCPLRFILVFLSA+LAGY AWRSASSSS SSS  +S             +KS P +E R 
Sbjct: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVAS-------------EKSPPSDEKR- 60

Query: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNES 96
                GV   ++NGFW FVDMASGR+LWRN+N S
Sbjct: 61 ------GVGTTIQNGFWIFVDMASGRYLWRNLNGS 75

[Close]

BLAST of IVF0004855.1 vs. ExPASy TrEMBL
Match: A0A1S2XJS9 (uncharacterized protein LOC101509787 OS=Cicer arietinum OX=3827 GN=LOC101509787 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.1e-13
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
           MCPLRFILVF SA+LAGYFAWR+ +SS      S  S                 ++E  S
Sbjct: 1   MCPLRFILVFFSAVLAGYFAWRTVNSSPKIELVSDDS----------------VEDEKSS 60

Query: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 104
            +++ F  K+M++NGFW FVDMASGR+LWRN+ ++  NK++++
Sbjct: 61  FKKENFDFKKMIQNGFWVFVDMASGRYLWRNLRQT--NKDEEL 85

[Close]

BLAST of IVF0004855.1 vs. NCBI nr
Match: XP_008441985.1 (PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo] >KAA0060106.1 uncharacterized protein E6C27_scaffold39G00250 [Cucumis melo var. makuwa] >TYK08421.1 uncharacterized protein E5676_scaffold654G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (486), Expect = 4.37e-61
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
           MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN 104
           VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN 104

[Close]

BLAST of IVF0004855.1 vs. NCBI nr
Match: XP_038882347.1 (uncharacterized protein LOC120073608 [Benincasa hispida])

HSP 1 Score: 157 bits (397), Expect = 1.69e-47
Identity = 87/103 (84.47%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
           MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSS   DIFQATE  DKS  + ENRS
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSS---DIFQATEDSDKSPAETENRS 60

Query: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 103
           V EDGFG+KR ++NGFWTFVDMASGRFLWRN+N SILNKNKQV
Sbjct: 61  VTEDGFGLKRTIQNGFWTFVDMASGRFLWRNLNASILNKNKQV 100

[Close]

BLAST of IVF0004855.1 vs. NCBI nr
Match: KAE8649374.1 (hypothetical protein Csa_021566 [Cucumis sativus])

HSP 1 Score: 135 bits (341), Expect = 2.25e-38
Identity = 74/93 (79.57%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
          MCPLRFIL+FLSAILAGYFAWRSASSSSSSS         DIFQATEA DKSAP+NENRS
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSS---------DIFQATEASDKSAPENENRS 60

Query: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMN 93
            ED  GV RMVE GFWTFVDMASGRFLWRN+N
Sbjct: 61 GTEDRLGVNRMVEKGFWTFVDMASGRFLWRNLN 84

[Close]

BLAST of IVF0004855.1 vs. NCBI nr
Match: KAG6595503.1 (hypothetical protein SDJN03_12056, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027489.1 hypothetical protein SDJN02_11502, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123 bits (308), Expect = 5.59e-34
Identity = 69/99 (69.70%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
          MCPLRFILVFLSAILAGY AWRSASSSSSSSSSS      D+F A E+ +KS  ++ENR 
Sbjct: 1  MCPLRFILVFLSAILAGYVAWRSASSSSSSSSSS------DLFPAVES-EKSPLESENRR 60

Query: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNK 99
          V EDGFG+K+M++ GFW FVDMASGRFLWRN++ S L+K
Sbjct: 61 VEEDGFGLKKMIQKGFWIFVDMASGRFLWRNLHSSALDK 92

[Close]

BLAST of IVF0004855.1 vs. NCBI nr
Match: XP_022156242.1 (uncharacterized protein LOC111023174 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 1.42e-21
Identity = 56/95 (58.95%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
          MCPLRFILVFLSA+LAGY AWRSASSSS SSS        D+     A +KS P +E R 
Sbjct: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSS--------DV-----ASEKSPPSDEKR- 60

Query: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNES 95
                GV   ++NGFW FVDMASGR+LWRN+N S
Sbjct: 61 ------GVGTTIQNGFWIFVDMASGRYLWRNLNGS 75

[Close]

BLAST of IVF0004855.1 vs. TAIR 10
Match: AT5G18150.1 (Methyltransferase-related protein )

HSP 1 Score: 77.4 bits (189), Expect = 7.5e-15
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
          MCP+RF+LVF SA+LAGYFAW++ SSS                     P+  +P   N  
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSS---------------------PEFDSPDELN-- 60

Query: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNE 95
            +    +K+ +ENGFW FVDMASGR+LWRN+ E
Sbjct: 61 -EKQELNLKKKMENGFWVFVDMASGRYLWRNLKE 70

[Close]

BLAST of IVF0004855.1 vs. TAIR 10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 8.3e-14
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
          MCPLRF+LVF SA+LAGY AWR+        +S+    S ++ QA EA +K         
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTV-------NSTPELFSDELLQA-EAKEK--------- 60

Query: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNE 95
              G   KR ++NG WTFVDMASGR+LWRN+ E
Sbjct: 61 ---QGLDFKRKMDNGLWTFVDMASGRYLWRNLKE 74

[Close]

BLAST of IVF0004855.1 vs. TAIR 10
Match: AT5G58375.1 (Methyltransferase-related protein )

HSP 1 Score: 51.2 bits (121), Expect = 5.8e-07
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
          MCPLR IL+FLSA LAG+F  +  +S+S      S +       A  A D S        
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFT------DAEHADDDSV------- 60

Query: 61 VREDGFG-VKRMVENGFWTFVDMASGRFLWRNM 93
              GF  V   +++GFWT VDMASGR+LW N+
Sbjct: 61 ---SGFSKVGMAMKSGFWTCVDMASGRYLWNNL 77

The following BLAST results are available for this feature:

BLAST of IVF0004855.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004855.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0V1	1.1e-45	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B5E4	1.1e-45	100.00	uncharacterized protein LOC103485982 OS=Cucumis melo OX=3656 GN=LOC103485982 PE=...	[more]
A0A0A0KWN3	4.7e-33	80.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192100 PE=4 SV=1	[more]
A0A6J1DRJ4	1.3e-14	57.89	uncharacterized protein LOC111023174 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A1S2XJS9	7.1e-13	45.63	uncharacterized protein LOC101509787 OS=Cicer arietinum OX=3827 GN=LOC101509787 ...	[more]

BLAST of IVF0004855.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441985.1	4.37e-61	100.00	PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo] >KAA0060106.1 unc...	[more]
XP_038882347.1	1.69e-47	84.47	uncharacterized protein LOC120073608 [Benincasa hispida]	[more]
KAE8649374.1	2.25e-38	79.57	hypothetical protein Csa_021566 [Cucumis sativus]	[more]
KAG6595503.1	5.59e-34	69.70	hypothetical protein SDJN03_12056, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022156242.1	1.42e-21	58.95	uncharacterized protein LOC111023174 [Momordica charantia]	[more]

BLAST of IVF0004855.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18150.1	7.5e-15	44.68	Methyltransferase-related protein	[more]
AT5G14602.1	8.3e-14	47.87	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G58375.1	5.8e-07	41.94	Methyltransferase-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..64
None	No IPR available	PANTHER	PTHR34132	EMB\|CAB87627.1-RELATED	coord: 1..98
None	No IPR available	PANTHER	PTHR34132:SF2	EMB\|CAB87627.1-RELATED	coord: 1..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0004855	IVF0004855	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0004855.1-exon	IVF0004855.1-exon-chr08:23351424..23352061	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0004855.1-three_prime_utr	IVF0004855.1-three_prime_utr-chr08:23351424..23351531	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0004855.1-cds	IVF0004855.1-cds-chr08:23351532..23351846	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0004855.1-five_prime_utr	IVF0004855.1-five_prime_utr-chr08:23351847..23352061	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0004855.1	IVF0004855.1-protein	polypeptide