IVF0002747.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0002747.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Poly(A)-specific ribonuclease
Location	chr12: 12669441 .. 12670778 (-)
Sequence length	1338
RNA-Seq Expression	IVF0002747.2
Synteny	IVF0002747.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGTCGACTCGCTTACTCTGTGAGTCAAGGACTAATCTAAAAAACGCGTTGAATCAAATACTCTGAACCTTACTACTACTCCCTATCCTCCCACTTTCCTTTTATATTCCTTTTCCTTTTTCATTCCTATATTAATCTCTCCTCTCTTCTTCTTCTTTTCCATCCGTATTCCTTCAATTCTCTCACTACTTCAATTCTACTTCTTCTTCTTTTTTTTTCTTTTTTTAAAAAAAAAACAATATAACTTAATTTAATTTAAATTTTCATCATATTCAGCCATGCTTATCCACGATCTCAACATCAACCACCAATCCATCCACAAACCCATCCAAATTCGTGAAGTTTGGGCTTCCAATCTCGATTCCGAATTTCGTTTGATCAGCGATCTCATCGATCGATTCCCTTGCGTTTCAATGGACACGGAGTTCCCCGGAGTCATCTTCCCCCAACAAACCAAACCCAAATTTCCAAATCACCCCTCCTATCACTACCAATTCCTCAAATCCAACGTCGACGTCCTCCATCTCATCCAGATCGGAATCACTCTCTCCGATTCCGACGGAAACTTGCCGGATCTGGGAACCGGCGACACCCGATTTATCTGGGAGTTCAACTTTAAGGACTTTGACGTGGCGCGTGACCCCCACGCTCCGGACTCCATCGAGCTTCTCCGCCGTCAGGGCATCGACTTCGAGAGGAACCGAGAGGAAGGGATCGATTCGTCACGCTTCGCGGAGTTGATGATGTCATCGGGACTCGTCTGTAACGAGTCAGTGAGTTGGGTGACGTTTCACAGTGCCTATGATTTTGGGTATTTGGTTAAGATTTTAACCCAGCAAAAGCTTCCGAAAGGGTTAGAAGAATTCCTCGGCGTCGTTAGGGTTTTCTTCGGGGATAACGTGTACGATATGAAGTACATGATGCGGTTCTGCCAGAGTCTATACGGGGGTTTGGACCGGATAGCGAAAACTATGAATGTGAACCGGGCGGTGGGAAAGTGCCATCAAGCCGGGTCAGATAGCTTGCTGACGTGGCATGCCTTTCAAAAGATGAGAGATACTTTTTTTGTAGAGAATGAAATGCACAAACATGCTGGGGTTTTGTACGGTTTAGAGGTCTTCTAATCTAAATCTAAAAATGTACCGTAAATAAATTTAATTTTAAAATTATATACCCATATATTATTTGTTTTTTTATTTATTTATTTTCTAAATAGTTGGCCCATTTTCCATTTTTTTATTTAATTTGAAATGTAAAGTGTATGGAAGGGTGGGAAGGTAATCTTAATTCAAAATATAATTACATAATAAGTAAATATTATAGGCTGGCTTTGGTAA

mRNA sequence

CGAGTCGACTCGCTTACTCTGTGAGTCAAGGACTAATCTAAAAAACGCGTTGAATCAAATACTCTGAACCTTACTACTACTCCCTATCCTCCCACTTTCCTTTTATATTCCTTTTCCTTTTTCATTCCTATATTAATCTCTCCTCTCTTCTTCTTCTTTTCCATCCGTATTCCTTCAATTCTCTCACTACTTCAATTCTACTTCTTCTTCTTTTTTTTTCTTTTTTTAAAAAAAAAACAATATAACTTAATTTAATTTAAATTTTCATCATATTCAGCCATGCTTATCCACGATCTCAACATCAACCACCAATCCATCCACAAACCCATCCAAATTCGTGAAGTTTGGGCTTCCAATCTCGATTCCGAATTTCGTTTGATCAGCGATCTCATCGATCGATTCCCTTGCGTTTCAATGGACACGGAGTTCCCCGGAGTCATCTTCCCCCAACAAACCAAACCCAAATTTCCAAATCACCCCTCCTATCACTACCAATTCCTCAAATCCAACGTCGACGTCCTCCATCTCATCCAGATCGGAATCACTCTCTCCGATTCCGACGGAAACTTGCCGGATCTGGGAACCGGCGACACCCGATTTATCTGGGAGTTCAACTTTAAGGACTTTGACGTGGCGCGTGACCCCCACGCTCCGGACTCCATCGAGCTTCTCCGCCGTCAGGGCATCGACTTCGAGAGGAACCGAGAGGAAGGGATCGATTCGTCACGCTTCGCGGAGTTGATGATGTCATCGGGACTCGTCTGTAACGAGTCAGTGAGTTGGGTGACGTTTCACAGTGCCTATGATTTTGGGTATTTGGTTAAGATTTTAACCCAGCAAAAGCTTCCGAAAGGGTTAGAAGAATTCCTCGGCGTCGTTAGGGTTTTCTTCGGGGATAACGTGTACGATATGAAGTACATGATGCGGTTCTGCCAGAGTCTATACGGGGGTTTGGACCGGATAGCGAAAACTATGAATGTGAACCGGGCGGTGGGAAAGTGCCATCAAGCCGGGTCAGATAGCTTGCTGACGTGGCATGCCTTTCAAAAGATGAGAGATACTTTTTTTGTAGAGAATGAAATGCACAAACATGCTGGGGTTTTGTACGGTTTAGAGGTCTTCTAATCTAAATCTAAAAATGTACCGTAAATAAATTTAATTTTAAAATTATATACCCATATATTATTTGTTTTTTTATTTATTTATTTTCTAAATAGTTGGCCCATTTTCCATTTTTTTATTTAATTTGAAATGTAAAGTGTATGGAAGGGTGGGAAGGTAATCTTAATTCAAAATATAATTACATAATAAGTAAATATTATAGGCTGGCTTTGGTAA

Coding sequence (CDS)

ATGCTTATCCACGATCTCAACATCAACCACCAATCCATCCACAAACCCATCCAAATTCGTGAAGTTTGGGCTTCCAATCTCGATTCCGAATTTCGTTTGATCAGCGATCTCATCGATCGATTCCCTTGCGTTTCAATGGACACGGAGTTCCCCGGAGTCATCTTCCCCCAACAAACCAAACCCAAATTTCCAAATCACCCCTCCTATCACTACCAATTCCTCAAATCCAACGTCGACGTCCTCCATCTCATCCAGATCGGAATCACTCTCTCCGATTCCGACGGAAACTTGCCGGATCTGGGAACCGGCGACACCCGATTTATCTGGGAGTTCAACTTTAAGGACTTTGACGTGGCGCGTGACCCCCACGCTCCGGACTCCATCGAGCTTCTCCGCCGTCAGGGCATCGACTTCGAGAGGAACCGAGAGGAAGGGATCGATTCGTCACGCTTCGCGGAGTTGATGATGTCATCGGGACTCGTCTGTAACGAGTCAGTGAGTTGGGTGACGTTTCACAGTGCCTATGATTTTGGGTATTTGGTTAAGATTTTAACCCAGCAAAAGCTTCCGAAAGGGTTAGAAGAATTCCTCGGCGTCGTTAGGGTTTTCTTCGGGGATAACGTGTACGATATGAAGTACATGATGCGGTTCTGCCAGAGTCTATACGGGGGTTTGGACCGGATAGCGAAAACTATGAATGTGAACCGGGCGGTGGGAAAGTGCCATCAAGCCGGGTCAGATAGCTTGCTGACGTGGCATGCCTTTCAAAAGATGAGAGATACTTTTTTTGTAGAGAATGAAATGCACAAACATGCTGGGGTTTTGTACGGTTTAGAGGTCTTCTAA

Protein sequence

MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF

Homology

[Close]

BLAST of IVF0002747.2 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 1.9e-110
Identity = 190/267 (71.16%), Postives = 224/267 (83.90%), Query Frame = 0


Query: 17  IQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKS 76
           I IR+VWA NL+SEF LI  +++ +P +SMDTEFPGVI+          +P+Y Y  LKS
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71

Query: 77  NVDVLHLIQIGITLSDSDGNLPDL-GTGDTRFIWEFNFKDFDVARDPHAPDSIELLRRQG 136
           NVD L LIQ+G+TLSD+DGNLPDL G  + R+IWEFNF+DFDV RDPHAPDSIELLRR G
Sbjct: 72  NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131

Query: 137 IDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEE 196
           IDFERNR EG++S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLVKILT+++LP  L E
Sbjct: 132 IDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALRE 191

Query: 197 FLGVVRVFFGDNVYDMKYMMRFC-QSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHA 256
           FLG++R FFGD VYD+K++MRFC Q LYGGLDR+A+++ VNRAVGKCHQAGSDSLLTW A
Sbjct: 192 FLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQA 251

Query: 257 FQKMRDTFFVENEMHKHAGVLYGLEVF 282
           FQ+MRD +FVE+   KHAGVLYGLEVF
Sbjct: 252 FQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of IVF0002747.2 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.1e-105
Identity = 188/264 (71.21%), Postives = 222/264 (84.09%), Query Frame = 0


Query: 20  REVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKSNVD 79
           REVWA NL+SEF LIS++ID +P +SMDTEFPGVIF  ++  +F N P   Y  LK+NVD
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIF--KSDLRFTN-PDDLYTLLKANVD 79

Query: 80  VLHLIQIGITLSDSDGNLPDLGTGDTR-FIWEFNFKDFDVARDPHAPDSIELLRRQGIDF 139
            L LIQ+G+TLSD +GNLPDLG    R FIWEFNF+DFDVARD HAPDSIELLRRQGIDF
Sbjct: 80  ALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDF 139

Query: 140 ERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEEFLG 199
           ERN  +G++S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILT+++LP  L EF  
Sbjct: 140 ERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKR 199

Query: 200 VVRVFFGDNVYDMKYMMRFCQ-SLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHAFQK 259
           V+RV FG+ VYD+K+MM+FC+  L+GGLDR+A+T+ VNRAVGKCHQAGSDSLLTWHAFQ+
Sbjct: 200 VMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQR 259

Query: 260 MRDTFFVENEMHKHAGVLYGLEVF 282
           MRD +FV++   KHAGVLYGLEVF
Sbjct: 260 MRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of IVF0002747.2 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 299.3 bits (765), Expect = 4.6e-80
Identity = 146/264 (55.30%), Postives = 197/264 (74.62%), Query Frame = 0


Query: 17  IQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKS 76
           IQIREVW  NL+SE  LI +++D FP V+MDTEFPG++   +    F  +  YHY+ LK+
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVC--RPVGTFKTNTEYHYETLKT 69

Query: 77  NVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDPHAPDSIELLRRQGI 136
           NV++L +IQ+G+T SD  GNLP  GT +   IW+FNF++FD+  D +A DSIELLR+ GI
Sbjct: 70  NVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGI 129

Query: 137 DFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEEF 196
           DF +N E GIDS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT Q LP+    F
Sbjct: 130 DFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGF 189

Query: 197 LGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHAFQ 256
             ++ V+F   VYD+K++M+FC SL+GGL+++A+ ++V R VG CHQAGSDSLLT   F+
Sbjct: 190 FEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFR 249

Query: 257 KMRDTFFVENEMHKHAGVLYGLEV 281
           K+++ FF+   M K++GVLYGL V
Sbjct: 250 KLQENFFI-GSMEKYSGVLYGLGV 268

[Close]

BLAST of IVF0002747.2 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 7.4e-78
Identity = 144/264 (54.55%), Postives = 194/264 (73.48%), Query Frame = 0


Query: 17  IQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKS 76
           IQIREVW  NL  E  LI D++D FP V+MDTEFPG++   +    F ++  YHY+ LK+
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVV--RPVGTFKSNADYHYETLKT 69

Query: 77  NVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDPHAPDSIELLRRQGI 136
           NV++L +IQ+G+T S+  GNLP  GT D   IW+FNF++FD+  D  A DSIELL++ GI
Sbjct: 70  NVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSGI 129

Query: 137 DFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEEF 196
           D  +N  +GIDS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT Q LP    +F
Sbjct: 130 DLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDF 189

Query: 197 LGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHAFQ 256
             ++ V+F   VYD+K++M+FC SL+GGL+++A+ + V R VG CHQAGSDSLLT   F+
Sbjct: 190 FKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFR 249

Query: 257 KMRDTFFVENEMHKHAGVLYGLEV 281
           K+++ FFV   +HK++GVLYGL V
Sbjct: 250 KLKENFFV-GPLHKYSGVLYGLGV 267

[Close]

BLAST of IVF0002747.2 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 6.5e-74
Identity = 140/264 (53.03%), Postives = 190/264 (71.97%), Query Frame = 0


Query: 17  IQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKS 76
           I IREVW  NL  EF LI +++D+F  ++MDTEFPGV+       K+ N    +Y+ LK 
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNN--DLNYRTLKE 69

Query: 77  NVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDPHAPDSIELLRRQGI 136
           NVD+L LIQ+G+T SD +GNLP  GT D   IW+FNF++F++  D +A +SIELLR+ GI
Sbjct: 70  NVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLRQCGI 129

Query: 137 DFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEEF 196
           DF++N E+GID  RF ELMMSSG+V N+++SWVTFH  YDFGYLVK+LT ++LP    +F
Sbjct: 130 DFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADF 189

Query: 197 LGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHAFQ 256
             ++ V+F   VYD+K++M FC  L+GGL+R+A+ M V R VG CHQAGSDSLLT  +F+
Sbjct: 190 FKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFR 249

Query: 257 KMRDTFFVENEMHKHAGVLYGLEV 281
           K+++ +F      K+ GVLYGL V
Sbjct: 250 KLKERYF-PGSTEKYTGVLYGLGV 267

[Close]

BLAST of IVF0002747.2 vs. ExPASy TrEMBL
Match: A0A5A7T1W0 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001920 PE=3 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 2.4e-164
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0


Query: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60
           MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
           PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR
Sbjct: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180
           DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL
Sbjct: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180

Query: 181 VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK 240
           VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK
Sbjct: 181 VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 282
           CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]

BLAST of IVF0002747.2 vs. ExPASy TrEMBL
Match: A0A1S3CJQ2 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103501738 PE=3 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 2.4e-164
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0


Query: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60
           MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
           PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR
Sbjct: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180
           DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL
Sbjct: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180

Query: 181 VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK 240
           VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK
Sbjct: 181 VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 282
           CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]

BLAST of IVF0002747.2 vs. ExPASy TrEMBL
Match: A0A0A0LYC8 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 9.2e-148
Identity = 256/281 (91.10%), Postives = 268/281 (95.37%), Query Frame = 0


Query: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60
           MLIHDLN NH+S    IQIREVWASNL+SEFRLI DLID+FPCVSMDTEFPGVIFPQQ  
Sbjct: 1   MLIHDLNTNHKS----IQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDI 60

Query: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
           PK PNHPS+HYQFLKSNVD+LHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR
Sbjct: 61  PKSPNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180
           D HAP+SIELLRRQGIDF+RNREEGIDSSRFAELMMSSGLVCN+SVSWVTFHSAYDFGYL
Sbjct: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180

Query: 181 VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK 240
           VKILT QKLPK LE+FLGVVR+FFGDNVYDMKY+MRFCQSLYGGLDRIAKTMNVNRAVGK
Sbjct: 181 VKILTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 282
           CHQAGSDSLLTWHAFQKMRDTFFV+ EMHKHAGVLYGLEVF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]

BLAST of IVF0002747.2 vs. ExPASy TrEMBL
Match: A0A6J1CN71 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=3 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.4e-127
Identity = 226/281 (80.43%), Postives = 247/281 (87.90%), Query Frame = 0


Query: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60
           M++ DL  N     KPIQIREVWASNL+SEF LI DLID+FPCVSMDTEFPGV+F    K
Sbjct: 1   MVVQDLKNN----SKPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAK 60

Query: 61  PKF-PNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVA 120
           P    N PS HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGTG +RFIWEFNF DFDVA
Sbjct: 61  PYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVA 120

Query: 121 RDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGY 180
           RD HAPDSIELLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDFGY
Sbjct: 121 RDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGY 180

Query: 181 LVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVG 240
           LVK+LT++ LP  LEEFLGV+RVFFGD VYD+KYMMRFC+SLYGGLDRIAK +NV+RAVG
Sbjct: 181 LVKVLTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVG 240

Query: 241 KCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEV 281
           KCHQAGSDSLLTWHAFQKMRDT+FV+N + KHAGVLYGLEV
Sbjct: 241 KCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV 277

[Close]

BLAST of IVF0002747.2 vs. ExPASy TrEMBL
Match: A0A6J1HU54 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.6e-126
Identity = 222/283 (78.45%), Postives = 249/283 (87.99%), Query Frame = 0


Query: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60
           M+ HDLN NH   +K I+IREVWASNL+SEF+LI DLID FPCVSMDTEFPG++F   T 
Sbjct: 1   MVSHDLNNNH---YKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTA 60

Query: 61  P--KFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDV 120
           P        S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+
Sbjct: 61  PFNSLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDL 120

Query: 121 ARDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFG 180
           ARD +APDSI+LLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF 
Sbjct: 121 ARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFA 180

Query: 181 YLVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAV 240
           YL+KILTQ++LP  ++EFLGV+RV FGDNVYD+KYMMRFC+SLYGGLDRIAK++NVNRAV
Sbjct: 181 YLIKILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAV 240

Query: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 282
           GKCHQAGSDSLLTWHAFQKMRDTFFV+NE+ KHAGVLYGLE F
Sbjct: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of IVF0002747.2 vs. NCBI nr
Match: XP_008463638.1 (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo] >KAA0035571.1 putative CCR4-associated factor 1-like protein 11 [Cucumis melo var. makuwa] >TYK30965.1 putative CCR4-associated factor 1-like protein 11 [Cucumis melo var. makuwa])

HSP 1 Score: 585 bits (1507), Expect = 6.19e-211
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0


Query: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60
           MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
           PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR
Sbjct: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180
           DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL
Sbjct: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180

Query: 181 VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK 240
           VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK
Sbjct: 181 VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281
           CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]

BLAST of IVF0002747.2 vs. NCBI nr
Match: XP_004139505.1 (LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus] >XP_031745377.1 LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus])

HSP 1 Score: 530 bits (1364), Expect = 3.38e-189
Identity = 256/281 (91.10%), Postives = 268/281 (95.37%), Query Frame = 0


Query: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60
           MLIHDLN NH+SI    QIREVWASNL+SEFRLI DLID+FPCVSMDTEFPGVIFPQQ  
Sbjct: 1   MLIHDLNTNHKSI----QIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDI 60

Query: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
           PK PNHPS+HYQFLKSNVD+LHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR
Sbjct: 61  PKSPNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180
           D HAP+SIELLRRQGIDF+RNREEGIDSSRFAELMMSSGLVCN+SVSWVTFHSAYDFGYL
Sbjct: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180

Query: 181 VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK 240
           VKILT QKLPK LE+FLGVVR+FFGDNVYDMKY+MRFCQSLYGGLDRIAKTMNVNRAVGK
Sbjct: 181 VKILTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281
           CHQAGSDSLLTWHAFQKMRDTFFV+ EMHKHAGVLYGLEVF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]

BLAST of IVF0002747.2 vs. NCBI nr
Match: XP_038877224.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 483 bits (1242), Expect = 1.37e-170
Identity = 234/282 (82.98%), Postives = 256/282 (90.78%), Query Frame = 0


Query: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60
           M+IHDLNIN++SI    +IREVWASNL+SEF+LI DLID+FPCVSMDTEFPG++F    +
Sbjct: 1   MVIHDLNINNKSI----KIREVWASNLESEFQLIRDLIDQFPCVSMDTEFPGIVFADPAR 60

Query: 61  P-KFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVA 120
           P  F + PS HY+ LKSNVD LHLIQIGITLSDSDGNLPDLGT DTRFIWEFNF DFDVA
Sbjct: 61  PFNFQSQPSDHYRLLKSNVDALHLIQIGITLSDSDGNLPDLGTDDTRFIWEFNFMDFDVA 120

Query: 121 RDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGY 180
           RD HAPDSIELLRRQGIDF RNR EGIDSSRFAELMMSSGLVCN SVSWVTFHSAYDFGY
Sbjct: 121 RDLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNNSVSWVTFHSAYDFGY 180

Query: 181 LVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVG 240
           LVKILTQ++LP  ++EFLGV+RVFFGDNVYDMKY+MRFC+SLYGGLDRIAK +NVNRAVG
Sbjct: 181 LVKILTQRRLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVG 240

Query: 241 KCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281
           KCHQAGSDSLLTWHAFQKMRDT+FV+NEM KHAGVLYGLEVF
Sbjct: 241 KCHQAGSDSLLTWHAFQKMRDTYFVQNEMQKHAGVLYGLEVF 278

[Close]

BLAST of IVF0002747.2 vs. NCBI nr
Match: XP_022142408.1 (probable CCR4-associated factor 1 homolog 11 [Momordica charantia])

HSP 1 Score: 462 bits (1190), Expect = 1.15e-162
Identity = 226/281 (80.43%), Postives = 247/281 (87.90%), Query Frame = 0


Query: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60
           M++ DL  N     KPIQIREVWASNL+SEF LI DLID+FPCVSMDTEFPGV+F    K
Sbjct: 1   MVVQDLKNNS----KPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAK 60

Query: 61  PKF-PNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVA 120
           P    N PS HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGTG +RFIWEFNF DFDVA
Sbjct: 61  PYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVA 120

Query: 121 RDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGY 180
           RD HAPDSIELLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDFGY
Sbjct: 121 RDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGY 180

Query: 181 LVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVG 240
           LVK+LT++ LP  LEEFLGV+RVFFGD VYD+KYMMRFC+SLYGGLDRIAK +NV+RAVG
Sbjct: 181 LVKVLTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVG 240

Query: 241 KCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEV 280
           KCHQAGSDSLLTWHAFQKMRDT+FV+N + KHAGVLYGLEV
Sbjct: 241 KCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV 277

[Close]

BLAST of IVF0002747.2 vs. NCBI nr
Match: XP_022945861.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 459 bits (1180), Expect = 4.11e-161
Identity = 223/283 (78.80%), Postives = 248/283 (87.63%), Query Frame = 0


Query: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60
           M+ HDLN NH   +K I+IREVWASNL+SEF+LI DLID FPCVSMDTEFPG++F   T 
Sbjct: 1   MVSHDLNNNH---YKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTA 60

Query: 61  P--KFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDV 120
           P        S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+
Sbjct: 61  PFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDL 120

Query: 121 ARDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFG 180
           ARD +APDSI+LLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF 
Sbjct: 121 ARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFA 180

Query: 181 YLVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAV 240
           YL+KILTQ+ LP  L+EFLGV+RV FGDNVYD+KYMMRFC+SLYGGLDRIAK++NVNRAV
Sbjct: 181 YLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAV 240

Query: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281
           GKCHQAGSDSLLTWHAFQKMRDTFFV+NE+ KHAGVLYGLE F
Sbjct: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of IVF0002747.2 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 400.2 bits (1027), Expect = 1.4e-111
Identity = 190/267 (71.16%), Postives = 224/267 (83.90%), Query Frame = 0


Query: 17  IQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKS 76
           I IR+VWA NL+SEF LI  +++ +P +SMDTEFPGVI+          +P+Y Y  LKS
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71

Query: 77  NVDVLHLIQIGITLSDSDGNLPDL-GTGDTRFIWEFNFKDFDVARDPHAPDSIELLRRQG 136
           NVD L LIQ+G+TLSD+DGNLPDL G  + R+IWEFNF+DFDV RDPHAPDSIELLRR G
Sbjct: 72  NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131

Query: 137 IDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEE 196
           IDFERNR EG++S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLVKILT+++LP  L E
Sbjct: 132 IDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALRE 191

Query: 197 FLGVVRVFFGDNVYDMKYMMRFC-QSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHA 256
           FLG++R FFGD VYD+K++MRFC Q LYGGLDR+A+++ VNRAVGKCHQAGSDSLLTW A
Sbjct: 192 FLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQA 251

Query: 257 FQKMRDTFFVENEMHKHAGVLYGLEVF 282
           FQ+MRD +FVE+   KHAGVLYGLEVF
Sbjct: 252 FQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of IVF0002747.2 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 384.4 bits (986), Expect = 7.7e-107
Identity = 188/264 (71.21%), Postives = 222/264 (84.09%), Query Frame = 0


Query: 20  REVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKSNVD 79
           REVWA NL+SEF LIS++ID +P +SMDTEFPGVIF  ++  +F N P   Y  LK+NVD
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIF--KSDLRFTN-PDDLYTLLKANVD 79

Query: 80  VLHLIQIGITLSDSDGNLPDLGTGDTR-FIWEFNFKDFDVARDPHAPDSIELLRRQGIDF 139
            L LIQ+G+TLSD +GNLPDLG    R FIWEFNF+DFDVARD HAPDSIELLRRQGIDF
Sbjct: 80  ALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDF 139

Query: 140 ERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEEFLG 199
           ERN  +G++S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILT+++LP  L EF  
Sbjct: 140 ERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKR 199

Query: 200 VVRVFFGDNVYDMKYMMRFCQ-SLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHAFQK 259
           V+RV FG+ VYD+K+MM+FC+  L+GGLDR+A+T+ VNRAVGKCHQAGSDSLLTWHAFQ+
Sbjct: 200 VMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQR 259

Query: 260 MRDTFFVENEMHKHAGVLYGLEVF 282
           MRD +FV++   KHAGVLYGLEVF
Sbjct: 260 MRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of IVF0002747.2 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 299.3 bits (765), Expect = 3.3e-81
Identity = 146/264 (55.30%), Postives = 197/264 (74.62%), Query Frame = 0


Query: 17  IQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKS 76
           IQIREVW  NL+SE  LI +++D FP V+MDTEFPG++   +    F  +  YHY+ LK+
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVC--RPVGTFKTNTEYHYETLKT 69

Query: 77  NVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDPHAPDSIELLRRQGI 136
           NV++L +IQ+G+T SD  GNLP  GT +   IW+FNF++FD+  D +A DSIELLR+ GI
Sbjct: 70  NVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGI 129

Query: 137 DFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEEF 196
           DF +N E GIDS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT Q LP+    F
Sbjct: 130 DFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGF 189

Query: 197 LGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHAFQ 256
             ++ V+F   VYD+K++M+FC SL+GGL+++A+ ++V R VG CHQAGSDSLLT   F+
Sbjct: 190 FEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFR 249

Query: 257 KMRDTFFVENEMHKHAGVLYGLEV 281
           K+++ FF+   M K++GVLYGL V
Sbjct: 250 KLQENFFI-GSMEKYSGVLYGLGV 268

[Close]

BLAST of IVF0002747.2 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 292.0 bits (746), Expect = 5.2e-79
Identity = 144/264 (54.55%), Postives = 194/264 (73.48%), Query Frame = 0


Query: 17  IQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKS 76
           IQIREVW  NL  E  LI D++D FP V+MDTEFPG++   +    F ++  YHY+ LK+
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVV--RPVGTFKSNADYHYETLKT 69

Query: 77  NVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDPHAPDSIELLRRQGI 136
           NV++L +IQ+G+T S+  GNLP  GT D   IW+FNF++FD+  D  A DSIELL++ GI
Sbjct: 70  NVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSGI 129

Query: 137 DFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEEF 196
           D  +N  +GIDS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT Q LP    +F
Sbjct: 130 DLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDF 189

Query: 197 LGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHAFQ 256
             ++ V+F   VYD+K++M+FC SL+GGL+++A+ + V R VG CHQAGSDSLLT   F+
Sbjct: 190 FKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFR 249

Query: 257 KMRDTFFVENEMHKHAGVLYGLEV 281
           K+++ FFV   +HK++GVLYGL V
Sbjct: 250 KLKENFFV-GPLHKYSGVLYGLGV 267

[Close]

BLAST of IVF0002747.2 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 292.0 bits (746), Expect = 5.2e-79
Identity = 144/264 (54.55%), Postives = 194/264 (73.48%), Query Frame = 0


Query: 17  IQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKPKFPNHPSYHYQFLKS 76
           IQIREVW  NL  E  LI D++D FP V+MDTEFPG++   +    F ++  YHY+ LK+
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVV--RPVGTFKSNADYHYETLKT 69

Query: 77  NVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDPHAPDSIELLRRQGI 136
           NV++L +IQ+G+T S+  GNLP  GT D   IW+FNF++FD+  D  A DSIELL++ GI
Sbjct: 70  NVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSGI 129

Query: 137 DFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTQQKLPKGLEEF 196
           D  +N  +GIDS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT Q LP    +F
Sbjct: 130 DLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDF 189

Query: 197 LGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHAFQ 256
             ++ V+F   VYD+K++M+FC SL+GGL+++A+ + V R VG CHQAGSDSLLT   F+
Sbjct: 190 FKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFR 249

Query: 257 KMRDTFFVENEMHKHAGVLYGLEV 281
           K+++ FFV   +HK++GVLYGL V
Sbjct: 250 KLKENFFV-GPLHKYSGVLYGLGV 267

The following BLAST results are available for this feature:

BLAST of IVF0002747.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMS6	1.9e-110	71.16	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LXM2	1.1e-105	71.21	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	4.6e-80	55.30	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	7.4e-78	54.55	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	6.5e-74	53.03	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of IVF0002747.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1W0	2.4e-164	100.00	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CJQ2	2.4e-164	100.00	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103501738 PE=3 SV=1	[more]
A0A0A0LYC8	9.2e-148	91.10	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV...	[more]
A0A6J1CN71	1.4e-127	80.43	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=...	[more]
A0A6J1HU54	2.6e-126	78.45	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 S...	[more]

BLAST of IVF0002747.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463638.1	6.19e-211	100.00	PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo] >KAA00355...	[more]
XP_004139505.1	3.38e-189	91.10	LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 11 [Cucumis sativ...	[more]
XP_038877224.1	1.37e-170	82.98	probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]	[more]
XP_022142408.1	1.15e-162	80.43	probable CCR4-associated factor 1 homolog 11 [Momordica charantia]	[more]
XP_022945861.1	4.11e-161	78.80	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 ...	[more]

BLAST of IVF0002747.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22250.1	1.4e-111	71.16	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	7.7e-107	71.21	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G32070.1	3.3e-81	55.30	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	5.2e-79	54.55	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	5.2e-79	54.55	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 6..280 e-value: 2.7E-96 score: 323.9
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 22..146 e-value: 5.4E-8 score: 32.5
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 13..281
None	No IPR available	PANTHER	PTHR10797:SF48	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 13..281
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 19..278

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0002747	IVF0002747	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002747.2-exon	IVF0002747.2-exon-chr12:12669441..12670778	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002747.2-three_prime_utr	IVF0002747.2-three_prime_utr-chr12:12669441..12669653	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002747.2-cds	IVF0002747.2-cds-chr12:12669654..12670499	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002747.2-five_prime_utr	IVF0002747.2-five_prime_utr-chr12:12670500..12670778	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0002747.2	IVF0002747.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity