IVF0001024.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0001024.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 15594008 .. 15594319 (-)
Sequence length225
RNA-Seq ExpressionIVF0001024.1
SyntenyIVF0001024.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCCAAAGTTAAACCACAAGAAACAAATTCCAAATTTCCCCACTTCGAAACATCAAATGGGTTGTCTGGAAATAGAAAGTTCTCATCAACACATCACATATATCATAGCAATAAGACAAAATCAGAGCGCCAGGGGAAATTATTACCTCGTTCGTTGGTTGTAATAATCGGTTGCTGCGCCGAATTGTTGGGTTGTGGTAAGAAAAGTTCAAAAAGAGATTTTCTTTTTCCGGTGGTTGAAATTTAGGGGTTTGAGGAGGAAGATGAACGGAGAGAACAAGGAGTGAAAGTTGGTGAGAAAACCTAG

mRNA sequence

ATGCCTTCCAAAGTTAAACCACAAGAAACAAATTCCAAATTTCCCCACTTCGAAACATCAAATGGGTTGTCTGGAAATAGAAAGTTCTCATCAACACATCACATATATCATAGCAATAAGACAAAATCAGAGCGCCAGGGGAAATTATTACCTCGTTCGTTGGTTGGGTTTGAGGAGGAAGATGAACGGAGAGAACAAGGAGTGAAAGTTGGTGAGAAAACCTAG

Coding sequence (CDS)

ATGCCTTCCAAAGTTAAACCACAAGAAACAAATTCCAAATTTCCCCACTTCGAAACATCAAATGGGTTGTCTGGAAATAGAAAGTTCTCATCAACACATCACATATATCATAGCAATAAGACAAAATCAGAGCGCCAGGGGAAATTATTACCTCGTTCGTTGGTTGGGTTTGAGGAGGAAGATGAACGGAGAGAACAAGGAGTGAAAGTTGGTGAGAAAACCTAG

Protein sequence

MPSKVKPQETNSKFPHFETSNGLSGNRKFSSTHHIYHSNKTKSERQGKLLPRSLVGFEEEDERREQGVKVGEKT
Homology
[Close]
BLAST of IVF0001024.1 vs. ExPASy TrEMBL
Match: A0A0A0LIH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850510 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 62/74 (83.78%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1  MPSKVKPQETNSKFPHFETSNGLSGNRKFSSTHHIYHSNKTKSERQGKLLPRSLVGFEEE 60
          MPSKVKPQET SKFP F+ SNGLSGN KFSSTHHIYHSNKTKSERQ +LLPR L GFEEE
Sbjct: 1  MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEE 60

Query: 61 DERREQGVKVGEKT 75
          DE R QG KVGEKT
Sbjct: 61 DEGRGQGGKVGEKT 74

[Close]
BLAST of IVF0001024.1 vs. NCBI nr
Match: KGN59846.1 (hypothetical protein Csa_001524 [Cucumis sativus])

HSP 1 Score: 117 bits (294), Expect = 1.01e-32
Identity = 62/74 (83.78%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1  MPSKVKPQETNSKFPHFETSNGLSGNRKFSSTHHIYHSNKTKSERQGKLLPRSLVGFEEE 60
          MPSKVKPQET SKFP F+ SNGLSGN KFSSTHHIYHSNKTKSERQ +LLPR L GFEEE
Sbjct: 1  MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEE 60

Query: 61 DERREQGVKVGEKT 74
          DE R QG KVGEKT
Sbjct: 61 DEGRGQGGKVGEKT 74

The following BLAST results are available for this feature:
BLAST of IVF0001024.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0001024.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIH61.4e-2383.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850510 PE=4 SV=1[more]
BLAST of IVF0001024.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59846.11.01e-3283.78hypothetical protein Csa_001524 [Cucumis sativus][more]
BLAST of IVF0001024.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..74

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0001024IVF0001024gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0001024.1-exonIVF0001024.1-exon-chr04:15594008..15594067exon
IVF0001024.1-exonIVF0001024.1-exon-chr04:15594155..15594319exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0001024.1-cdsIVF0001024.1-cds-chr04:15594008..15594067CDS
IVF0001024.1-cdsIVF0001024.1-cds-chr04:15594155..15594319CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0001024.1IVF0001024.1-proteinpolypeptide