IVF0001024 (gene) Melon (IVF77) v1

Overview


Name	IVF0001024
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 15594008 .. 15594319 (-)
RNA-Seq Expression	IVF0001024
Synteny	IVF0001024

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCCAAAGTTAAACCACAAGAAACAAATTCCAAATTTCCCCACTTCGAAACATCAAATGGGTTGTCTGGAAATAGAAAGTTCTCATCAACACATCACATATATCATAGCAATAAGACAAAATCAGAGCGCCAGGGGAAATTATTACCTCGTTCGTTGGTTGTAATAATCGGTTGCTGCGCCGAATTGTTGGGTTGTGGTAAGAAAAGTTCAAAAAGAGATTTTCTTTTTCCGGTGGTTGAAATTTAGGGGTTTGAGGAGGAAGATGAACGGAGAGAACAAGGAGTGAAAGTTGGTGAGAAAACCTAG

mRNA sequence

ATGCCTTCCAAAGTTAAACCACAAGAAACAAATTCCAAATTTCCCCACTTCGAAACATCAAATGGGTTGTCTGGAAATAGAAAGTTCTCATCAACACATCACATATATCATAGCAATAAGACAAAATCAGAGCGCCAGGGGAAATTATTACCTCGTTCGTTGGTTGGGTTTGAGGAGGAAGATGAACGGAGAGAACAAGGAGTGAAAGTTGGTGAGAAAACCTAG

Coding sequence (CDS)

ATGCCTTCCAAAGTTAAACCACAAGAAACAAATTCCAAATTTCCCCACTTCGAAACATCAAATGGGTTGTCTGGAAATAGAAAGTTCTCATCAACACATCACATATATCATAGCAATAAGACAAAATCAGAGCGCCAGGGGAAATTATTACCTCGTTCGTTGGTTGGGTTTGAGGAGGAAGATGAACGGAGAGAACAAGGAGTGAAAGTTGGTGAGAAAACCTAG

Protein sequence

MPSKVKPQETNSKFPHFETSNGLSGNRKFSSTHHIYHSNKTKSERQGKLLPRSLVGFEEEDERREQGVKVGEKT

Homology

[Close]

BLAST of IVF0001024 vs. ExPASy TrEMBL
Match: A0A0A0LIH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850510 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 62/74 (83.78%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MPSKVKPQETNSKFPHFETSNGLSGNRKFSSTHHIYHSNKTKSERQGKLLPRSLVGFEEE 60
          MPSKVKPQET SKFP F+ SNGLSGN KFSSTHHIYHSNKTKSERQ +LLPR L GFEEE
Sbjct: 1  MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEE 60

Query: 61 DERREQGVKVGEKT 75
          DE R QG KVGEKT
Sbjct: 61 DEGRGQGGKVGEKT 74

[Close]

BLAST of IVF0001024 vs. NCBI nr
Match: KGN59846.1 (hypothetical protein Csa_001524 [Cucumis sativus])

HSP 1 Score: 117 bits (294), Expect = 1.01e-32
Identity = 62/74 (83.78%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MPSKVKPQETNSKFPHFETSNGLSGNRKFSSTHHIYHSNKTKSERQGKLLPRSLVGFEEE 60
          MPSKVKPQET SKFP F+ SNGLSGN KFSSTHHIYHSNKTKSERQ +LLPR L GFEEE
Sbjct: 1  MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEE 60

Query: 61 DERREQGVKVGEKT 74
          DE R QG KVGEKT
Sbjct: 61 DEGRGQGGKVGEKT 74

The following BLAST results are available for this feature:

BLAST of IVF0001024 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001024 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIH6	1.4e-23	83.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850510 PE=4 SV=1	[more]

BLAST of IVF0001024 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59846.1	1.01e-32	83.78	hypothetical protein Csa_001524 [Cucumis sativus]	[more]

BLAST of IVF0001024 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001024.1	IVF0001024.1	mRNA