HG10022223.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGTCTCAAAGGGTTCAAGAATGGCTACTCTTATATTGAGAATTTTAACCTTTATTTTGATATTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTCTTTTTAAAGGGACTTTAGGTGAAACAAAAGTTGAGTTCAAAGATGTTTATTCCTATCGGTAAGTCTATTTTTTTTTTTTTTTTTTTTTTGGGTTTAAATAATGTTTTGGTGATTTTTTAGATAATAATGTAAATATTTGTTTTTCTAATTTATTGACTTAAATGGTCAGTTATGTGGTAGCTGTGGCGGTTATAGGAGCTACTTTGAGTCTTCTTCAAATTGTTCTCGCCATTTACTCTCTCCTTACCAAAGGCGAGGGAACTCCACTTTTCAATTTGTTCAGCGATAAGGTCACACTCTTTTTATTCAAGTAGTTGGAAGACACGTGTAATGCATTTTAATTGTGATTCAATTGTGTTCTTTATCATAAAATTTTGATTCAATATTCATTGAATGTTATTAGTAAATATTTCACATGAAATGAAGTAATTTTAAAATAGTACTTTAAATCATAAGAATATGAGATATTTTGGAAGTTATTCGAAATTTTTGGGAAGTTTTTTAAAAGAAAAAAATTATTTTTAAATATGAACATAATTATATAATTGAATTTAAATTTTAAATAGTTCACATGAAATTTAAAAGTATAAAAAGAGAAAAAATATATAGAAATAGATGAATGAATAAAATTAAAATAATGTAATTGGAATAAAAATGAGAACTTAATTATTATTTCATAGGTTAATTCTTTGATACATCCATAGTATTAAATTTCCATCGATATGTCGAAATTTCCATCAATATTTCCATGTTTTCATGAGTTCGAAATCGATTTGAGGGGTGAATCGATATTTTCACTATATTGTAAAAAAATCTACGAAACACGAAAAATAAGTTTCAAAATGCTACTAATATAAATATAATATAAATAATAGACCTGTTTACTTATTTGAAAATAATAAAATGTTTATTTACTATTTTAAATTTTTTGTTTTAAATTTTTTTCAGAAATATTCATCGAAATCGATATTTTGTTGATATTTCTATCGAAATTTCGGTAAATTTAAGACCTCGATGTTTCCATCGATATGGATATTTTAAACTTTGGATACATCCTTCTTAGAAGATAATAATTTTTTTTTTGGAGGAAAAAAAAAGAATGAAAGGAAAATGTTTGGAAATAAAAGGAATTTTTTTCAAATGAATTTGGTAGTCTTCTGAAAAAATAAGATTGTTTGTTTTTTTAATAAAAACAAAAAAATAAAATCTCTCATCAAATTCTTTTTTTTTTCATGTATTTGATTTAAAAAGTCTATTATAATTATTTAATATATGTATCTAAAATCCCAAATAATAAAATATCTATAAAATTATAAGGGTATTTGATTTTATAATTAATTCAATAAAAGTTAAAAAGAACTTAATGTTTCTTGTGGAGAACAAATACATGAAAAAAGTAATGTGTTCTAACAACAAATACATGAAAGAAGTAATGTGATCTAAACAATAAATAATTAGATAATGGCTAGCTAGTAATTATTGATTTAAATTAGTTTTAAAAAAATATTTTTTCCCTAAATTAAACACTCCTTCCTTTTAGATTTTTTTTAATATATAAAGCAACAAATAAGTCATTCCAAAAAAAAAAAAAATTCAAAAACATAAAATATAAGTATTTTTAAATCCAATCCAATTGTTTCATTTACGTAACAAAATCAAACTTGAAGTTTGAGCATCCTTTTATATTTTCAGTTGATGCCACTATGTGTTGTATTCACAAGAGATTTAATTATTCTTTTTTTAAAAAAAATATTCGTTGAAGGAACAAAAAAAAAAAAAAAAAAAAAAAAATACAAACATTGACAGAAATATCTTAATTTCGGAGATCAAACTATATTATATTCAATTTTAATTTATATTTATTTTAGTTCTTAGTCTATTTTTTAAAGAAAAATATTGCTAATCAAATAAATCTCCGATCTAATTAAGGTTTAACAAACAACATCTCTCATTGATGTGTCTAATTTCAATGGTTAGCAAGATAAACATTTTAACTTAATTTTTTTTATTTAAAAAAAGATACAAATGAAATATTCAACAAAATAATCAATTTTCTTAACGATCAAGAAGTAACAGTGAGATGATTCCACAATGGATTTGTGTAAGTAAGGAAACTGCAATTATATTGTAAGGAAATCAATGAATCATAAAAAGAACAAATTCCAAAACCCTTAACTCAATTGATGTCAATTCAAAGTGAAGAATTAGAATTGAATTACCTTTTGATTGAAGACCAAGAGATAAAGGAGAACTAATTTATTAACTCCAAGTTTGAACACTTCACAAGCAAGGTGATCAGACTTATTTGAATGTTCTTGGTATGCAATCATGAATTCAAGAATTGTAAAAAATGATGATAAGACTTTGTTATCTACCAAAAAAATTTTATTCAATAAAATCCAAAAACTCAAGACATCAAAAACCAACGTATTGTGTTCGCTTTTCCCCTTTAAAACACATCCTACTTAATCAAAGAGACTTAAAAAGTCCATTCTATCCCTACTAAAAACTCAAATAAAACATATAGGGATACAATAATGAAAATACCAAAAAAAAAAAAAAATCTATTTGCAAATATTAAAAAATGCGAATTAAAAATTTAACAAAGTGCAATTGGTTTCATGTTGTAGCATTATTTGAAGCCAATTATAGAACTTGATTAGATGTTGCTGCTTGAATCTCCTAAATTGAGTTCATCTCCATTTGTATGTGAGAATTCATTGCTAACTGCAACTTCTTGGCATTTGAACATGTGATTAGTCGCAGAGGTAACACAAGGGCTTCCTAGTTCATATCAACTAATGTGAATATTATATAAAATAATAAGCTTTTTAACTTATTAACAAAATGTAAATTTTTATTAAATATTATTTATGTTTTTTTTTAATAATTTTTCAATGTAAAATTGAGACTATGGAGATTGCAAATTTGTAAAATTTGAGAAACTAATGAACAAATACTCTACTTGGTAATGTTTGATTTTTTACATTTTACAAAAGTATTACAAATTTACAAATGCTAATTAATGTATATCTTATAATTTATGGTCCATTTTACCTCCAATGCATTACAAATTTTCAACTAGTTCATATGGAAGATTCCACATTAAAAATATGAAGAAATCTCACAATTTCTATAAGATATATATATTACTTTTCTTATTATTGTCGATCGGTTTTGATGTTTTGTGTTTCTTTATGTGCAGTTCTTATCGTACCTACTATTATCGGGCGCCTCGGCGGGATTAGGCGCAGGGATCGATATGAGAGCGAATTTGAAAGTGCTGGCTGGCAATGTTTTGAACTCATTTTTCGACAAGGGAAGTGCTGCAGCTGCTATTCTTCTTGTTGCATTTGTTTGTGCTGCCATGGTTTCAATTCTCTCTTCCTTGGCTCTCATCAGAAAGCCTTAA ATGGCAGTCTCAAAGGGTTCAAGAATGGCTACTCTTATATTGAGAATTTTAACCTTTATTTTGATATTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTCTTTTTAAAGGGACTTTAGGTGAAACAAAAGTTGAGTTCAAAGATGTTTATTCCTATCGTTATGTGGTAGCTGTGGCGGTTATAGGAGCTACTTTGAGTCTTCTTCAAATTGTTCTCGCCATTTACTCTCTCCTTACCAAAGGCGAGGGAACTCCACTTTTCAATTTGTTCAGCGATAAGTTCTTATCGTACCTACTATTATCGGGCGCCTCGGCGGGATTAGGCGCAGGGATCGATATGAGAGCGAATTTGAAAGTGCTGGCTGGCAATGTTTTGAACTCATTTTTCGACAAGGGAAGTGCTGCAGCTGCTATTCTTCTTGTTGCATTTGTTTGTGCTGCCATGGTTTCAATTCTCTCTTCCTTGGCTCTCATCAGAAAGCCTTAA ATGGCAGTCTCAAAGGGTTCAAGAATGGCTACTCTTATATTGAGAATTTTAACCTTTATTTTGATATTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTCTTTTTAAAGGGACTTTAGGTGAAACAAAAGTTGAGTTCAAAGATGTTTATTCCTATCGTTATGTGGTAGCTGTGGCGGTTATAGGAGCTACTTTGAGTCTTCTTCAAATTGTTCTCGCCATTTACTCTCTCCTTACCAAAGGCGAGGGAACTCCACTTTTCAATTTGTTCAGCGATAAGTTCTTATCGTACCTACTATTATCGGGCGCCTCGGCGGGATTAGGCGCAGGGATCGATATGAGAGCGAATTTGAAAGTGCTGGCTGGCAATGTTTTGAACTCATTTTTCGACAAGGGAAGTGCTGCAGCTGCTATTCTTCTTGTTGCATTTGTTTGTGCTGCCATGGTTTCAATTCTCTCTTCCTTGGCTCTCATCAGAAAGCCTTAA MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLSLLQIVLAIYSLLTKGEGTPLFNLFSDKFLSYLLLSGASAGLGAGIDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP Homology
BLAST of HG10022223.1 vs. NCBI nr
Match: XP_038877614.1 (CASP-like protein 4D1 [Benincasa hispida]) HSP 1 Score: 233.4 bits (594), Expect = 1.4e-57 Identity = 129/160 (80.62%), Postives = 144/160 (90.00%), Query Frame = 0
BLAST of HG10022223.1 vs. NCBI nr
Match: XP_022134193.1 (CASP-like protein 4D1 [Momordica charantia]) HSP 1 Score: 228.8 bits (582), Expect = 3.4e-56 Identity = 124/163 (76.07%), Postives = 145/163 (88.96%), Query Frame = 0
BLAST of HG10022223.1 vs. NCBI nr
Match: XP_022963262.1 (CASP-like protein 4D1 [Cucurbita moschata] >KAG6602371.1 CASP-like protein 4D1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 215.7 bits (548), Expect = 3.0e-52 Identity = 121/163 (74.23%), Postives = 141/163 (86.50%), Query Frame = 0
BLAST of HG10022223.1 vs. NCBI nr
Match: XP_022990589.1 (CASP-like protein 4D1 [Cucurbita maxima]) HSP 1 Score: 212.2 bits (539), Expect = 3.3e-51 Identity = 119/163 (73.01%), Postives = 140/163 (85.89%), Query Frame = 0
BLAST of HG10022223.1 vs. NCBI nr
Match: XP_022990642.1 (CASP-like protein 4D1 [Cucurbita maxima]) HSP 1 Score: 211.8 bits (538), Expect = 4.3e-51 Identity = 120/163 (73.62%), Postives = 140/163 (85.89%), Query Frame = 0
BLAST of HG10022223.1 vs. ExPASy Swiss-Prot
Match: B9SXY8 (CASP-like protein 4D1 OS=Ricinus communis OX=3988 GN=RCOM_1206790 PE=3 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 3.6e-24 Identity = 74/162 (45.68%), Postives = 108/162 (66.67%), Query Frame = 0
BLAST of HG10022223.1 vs. ExPASy Swiss-Prot
Match: B9NBE5 (CASP-like protein 4D1 OS=Populus trichocarpa OX=3694 GN=POPTR_0010s21230g PE=2 SV=2) HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22 Identity = 70/167 (41.92%), Postives = 105/167 (62.87%), Query Frame = 0
BLAST of HG10022223.1 vs. ExPASy Swiss-Prot
Match: D7LD60 (CASP-like protein 4D1 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_903205 PE=3 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.9e-18 Identity = 64/163 (39.26%), Postives = 103/163 (63.19%), Query Frame = 0
BLAST of HG10022223.1 vs. ExPASy Swiss-Prot
Match: A1XGB4 (CASP-like protein PIMP1 OS=Capsicum annuum OX=4072 GN=PIMP1 PE=2 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.9e-18 Identity = 67/158 (42.41%), Postives = 100/158 (63.29%), Query Frame = 0
BLAST of HG10022223.1 vs. ExPASy Swiss-Prot
Match: Q8GWD5 (CASP-like protein 4D1 OS=Arabidopsis thaliana OX=3702 GN=At2g39530 PE=2 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17 Identity = 63/163 (38.65%), Postives = 106/163 (65.03%), Query Frame = 0
BLAST of HG10022223.1 vs. ExPASy TrEMBL
Match: A0A6J1C1A4 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006513 PE=3 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56 Identity = 124/163 (76.07%), Postives = 145/163 (88.96%), Query Frame = 0
BLAST of HG10022223.1 vs. ExPASy TrEMBL
Match: A0A6J1HET3 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111463525 PE=3 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52 Identity = 121/163 (74.23%), Postives = 141/163 (86.50%), Query Frame = 0
BLAST of HG10022223.1 vs. ExPASy TrEMBL
Match: A0A6J1JSF8 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487423 PE=3 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.6e-51 Identity = 119/163 (73.01%), Postives = 140/163 (85.89%), Query Frame = 0
BLAST of HG10022223.1 vs. ExPASy TrEMBL
Match: A0A6J1JJD2 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487466 PE=3 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 2.1e-51 Identity = 120/163 (73.62%), Postives = 140/163 (85.89%), Query Frame = 0
BLAST of HG10022223.1 vs. ExPASy TrEMBL
Match: A0A6J1GRM4 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456492 PE=3 SV=1) HSP 1 Score: 209.9 bits (533), Expect = 7.9e-51 Identity = 119/163 (73.01%), Postives = 139/163 (85.28%), Query Frame = 0
BLAST of HG10022223.1 vs. TAIR 10
Match: AT2G39530.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 90.9 bits (224), Expect = 1.0e-18 Identity = 63/163 (38.65%), Postives = 106/163 (65.03%), Query Frame = 0
BLAST of HG10022223.1 vs. TAIR 10
Match: AT2G39518.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 87.0 bits (214), Expect = 1.5e-17 Identity = 56/161 (34.78%), Postives = 97/161 (60.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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