HG10020576.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020576.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr05: 671520 .. 672444 (-)
Sequence length	750
RNA-Seq Expression	HG10020576.1
Synteny	HG10020576.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTGTCGTGACCCAGGCTTCGGCCGCTGTCTTCCTCGCGTCGAGCTCGAGGTTTCTCTCGGGGTCTTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTCAGTTCCTAATTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCAGGTTTGCCATCCCCAGCTTACCTTGATGGAAGGTATAAATTATTTCAAACGTATATAAGAGATCTGGAAATGGAGATGTGAATTAAACAAACAACTTAAACATTTCTGTTTGCAGTCTGCCAGGTGACAATGGGTTTGATCCTTTGGGACTTGCAGAGGATCGTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTCGTGAATGGCCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTCACAAATTTCGGAATCATCAACGTACCGAAATGGTACGATGCAGGGAAAGCTGAGTATTTCGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATATTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAGGAGAAGGAGATTGCTAATGGTAAATGACTCAGAAACAAAATAGCTAATCAAATTCCTCAATTATTACATGTATAATAATTTAGCTAATTAAGTTTTGATGATGTTCTACAGGAAGACTGGCAATGTTGGCATTCTTGGGATTCATTGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCACAACACTATAGTTCAAACACTAAGGGGATAG

mRNA sequence

ATGGCAACTGTCGTGACCCAGGCTTCGGCCGCTGTCTTCCTCGCGTCGAGCTCGAGGTTTCTCTCGGGGTCTTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTCAGTTCCTAATTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCAGGTTTGCCATCCCCAGCTTACCTTGATGGAAGTCTGCCAGGTGACAATGGGTTTGATCCTTTGGGACTTGCAGAGGATCGTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTCGTGAATGGCCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTCACAAATTTCGGAATCATCAACGTACCGAAATGGTACGATGCAGGGAAAGCTGAGTATTTCGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATATTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAGGAGAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTCATTGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCACAACACTATAGTTCAAACACTAAGGGGATAG

Coding sequence (CDS)

ATGGCAACTGTCGTGACCCAGGCTTCGGCCGCTGTCTTCCTCGCGTCGAGCTCGAGGTTTCTCTCGGGGTCTTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTCAGTTCCTAATTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCAGGTTTGCCATCCCCAGCTTACCTTGATGGAAGTCTGCCAGGTGACAATGGGTTTGATCCTTTGGGACTTGCAGAGGATCGTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTCGTGAATGGCCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTCACAAATTTCGGAATCATCAACGTACCGAAATGGTACGATGCAGGGAAAGCTGAGTATTTCGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATATTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAGGAGAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTCATTGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCACAACACTATAGTTCAAACACTAAGGGGATAG

Protein sequence

MATVVTQASAAVFLASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG

Homology

[Close]

BLAST of HG10020576.1 vs. NCBI nr
Match: XP_004137413.1 (chlorophyll a-b binding protein P4, chloroplastic [Cucumis sativus] >KGN64012.1 hypothetical protein Csa_013821 [Cucumis sativus])

HSP 1 Score: 489.2 bits (1258), Expect = 2.1e-134
Identity = 235/250 (94.00%), Postives = 241/250 (96.40%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           MATV+TQASA VF   AS SRFLSGSSGKFNRALSVKPTTSS+PN+FKVEAKKGEWLPGL
Sbjct: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
           PSP YLDGSLPGDNGFDPLGLAED ENLRWY QAELVNGRWAMLGVAGMVLPEV TN+GI
Sbjct: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           DVGYPGGIFNPLNFEPTLEA+EKEIANGRLAMLAFLGFIVQHNVTGKGPFDNF+QHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240

Query: 241 WHNTIVQTLR 249
           WHNTIVQTLR
Sbjct: 241 WHNTIVQTLR 250

[Close]

BLAST of HG10020576.1 vs. NCBI nr
Match: XP_038894825.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 489.2 bits (1258), Expect = 2.1e-134
Identity = 237/251 (94.42%), Postives = 243/251 (96.81%), Query Frame = 0


Query: 1   MATVVTQASAAVFLASS--SRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           MATV+TQASA+VF   +  SRFLS +SGKFNR LSVKPTTSSVPNSFKVEAKKGEWLPGL
Sbjct: 1   MATVMTQASASVFRPCTLRSRFLSRTSGKFNRGLSVKPTTSSVPNSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
           PSPAYLDGSLPGDNGFDPLGLAED ENLRWYVQAELVNGRWAMLGVAGM+LPEVFT+FGI
Sbjct: 61  PSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTIVQTLRG 250
           WHNTIVQTLRG
Sbjct: 241 WHNTIVQTLRG 251

[Close]

BLAST of HG10020576.1 vs. NCBI nr
Match: XP_023524863.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 488.4 bits (1256), Expect = 3.6e-134
Identity = 236/251 (94.02%), Postives = 243/251 (96.81%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           M+ V+ QASAAVF   AS SRFLSGSSGKFNRALSVKPTTSSVP+SFKVEAKKGEWLPGL
Sbjct: 1   MSIVMIQASAAVFRPSASRSRFLSGSSGKFNRALSVKPTTSSVPSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
           PSP YLDGSLPGDNGFDPLGLAED ENLRWYVQAELVNGRWAMLGVAGM+LPEVFT++GI
Sbjct: 61  PSPVYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTIVQTLRG 250
           WHNTIVQTLRG
Sbjct: 241 WHNTIVQTLRG 251

[Close]

BLAST of HG10020576.1 vs. NCBI nr
Match: XP_022949090.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 485.3 bits (1248), Expect = 3.1e-133
Identity = 235/251 (93.63%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           M+ V+ QASAAVF   AS SRFL GSSGKFNRALSVKPTTS VP+SFKVEAKKGEWLPGL
Sbjct: 1   MSIVMIQASAAVFRPSASRSRFLLGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
           PSPAYLDGSLPGDNGFDPLGLAED ENLRWYVQAELVNGRWAMLGVAGM+LPEVFT++GI
Sbjct: 61  PSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTIVQTLRG 250
           WHNTIVQTLRG
Sbjct: 241 WHNTIVQTLRG 251

[Close]

BLAST of HG10020576.1 vs. NCBI nr
Match: XP_022998805.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 485.0 bits (1247), Expect = 4.0e-133
Identity = 235/251 (93.63%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           M+ V+ QASAAVF   AS SRFLSGSSGKFNRALSVKPTTS VP+SFKVEAKKGEWLPGL
Sbjct: 1   MSIVMIQASAAVFRPSASRSRFLSGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
           PSPAYLDGSLPGDNGFDPLGLAED ENLRWYVQAELVNGRWAMLGVAGM+LPEVFT+ GI
Sbjct: 61  PSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSNGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTIVQTLRG 250
           WHNT+VQTLRG
Sbjct: 241 WHNTVVQTLRG 251

[Close]

BLAST of HG10020576.1 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 3.7e-121
Identity = 212/251 (84.46%), Postives = 221/251 (88.05%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           MATV TQASAA+F      SRFL GSSGK NR ++ +P   S   SFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
            SP YL GSLPGDNGFDPLGLAED ENLRW+VQAELVNGRWAMLGVAGM+LPEVFT+ GI
Sbjct: 61  ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           +VGYPGGIFNPLNF PTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDN LQHISDP
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQTLRG 250
           WHNTIVQTL G
Sbjct: 241 WHNTIVQTLGG 251

[Close]

BLAST of HG10020576.1 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.3e-115
Identity = 203/249 (81.53%), Postives = 218/249 (87.55%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSV-PNSFKVEAKKGEWLPG 60
           MATV T ASA++F    S  RFL+GSSG+ NR LS     SS   +SFKVEAKKGEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 61  LPSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFG 120
           L SP YL GSL GDNGFDPLGLAED ENL+W+VQAELVNGRWAMLGVAGM+LPEVFT  G
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
           IINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 181 NDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISD 240
            +VGYPGGIFNPLNF PT EAKEKE+ANGRLAMLAFLGF+VQHNVTGKGPF+N LQH+SD
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240

Query: 241 PWHNTIVQT 247
           PWHNTIVQT
Sbjct: 241 PWHNTIVQT 249

[Close]

BLAST of HG10020576.1 vs. ExPASy Swiss-Prot
Match: Q36718 (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare OX=4513 GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.1e-85
Identity = 151/227 (66.52%), Postives = 176/227 (77.53%), Query Frame = 0


Query: 27  KFNRALSVKPTTSSVPNSFKVEA---KKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDR 86
           +F   +   P  S  P S + +     KG WLPGL SPAYLDGSL GDNGFDPL LAED 
Sbjct: 6   RFRTRVPPSPAASGSPRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDP 65

Query: 87  ENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGIINVPKWYD-AGKAEYFASSSTLFVI 146
           E+LRW+VQA++VNGRWAMLGVAGM++PEV T  G++N P+W    GK  YFASSST   +
Sbjct: 66  EDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRV 125

Query: 147 EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKE 206
             +   YVEIRRWQDIKNPGSVNQDPIFK YSLPP++ GYPG +FNPLNF P LE KEKE
Sbjct: 126 H-MSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAP-LENKEKE 185

Query: 207 IANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG 250
           +ANGRLAMLAFLGF+VQHNV GKGPF+N  QH++DPWHNTI+QT+ G
Sbjct: 186 LANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230

[Close]

BLAST of HG10020576.1 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-60
Identity = 122/245 (49.80%), Postives = 151/245 (61.63%), Query Frame = 0


Query: 8   ASAAVFLASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGE---WLPGLPSPAYL 67
           AS+A+   SS  FL G   +  + L+V P  S    S +  A   +   W PG   P +L
Sbjct: 7   ASSAIAAISSPSFLGGKKLRLKKKLTV-PAVSRPDASVRAVAADPDRPIWFPGSTPPEWL 66

Query: 68  DGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGIINVPKW 127
           DGSLPGD GFDPLGL+ D ++L+W VQAE+V+ RWAMLG AG+ +PE  T  GI+N P W
Sbjct: 67  DGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 126

Query: 128 YDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPG 187
           Y AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L   DVGYPG
Sbjct: 127 YTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPG 186

Query: 188 GI-FNPLNF-----EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 244
           G+ F+PL +         E + KEI NGRLAMLA +G   QH  TG GP DN   H++DP
Sbjct: 187 GLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 246

[Close]

BLAST of HG10020576.1 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.8e-59
Identity = 114/244 (46.72%), Postives = 150/244 (61.48%), Query Frame = 0


Query: 6   TQASAAVFLASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGLPSPAYLD 65
           +Q + ++  A+ + FL G   + ++ ++   + S   ++   +  +  W PG   P +LD
Sbjct: 20  SQKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLD 79

Query: 66  GSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGIINVPKWY 125
           GSLPGD GFDPLGL  D E+L+W  QAELV+ RWAMLG AG+ +PE  T  G++N P WY
Sbjct: 80  GSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWY 139

Query: 126 DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGG 185
            AG+ EYF  ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   DVGYPGG
Sbjct: 140 TAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 199

Query: 186 I-FNPLNF-----EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPW 244
           + F+PL +         E + KEI NGRLAMLA +G   QH  TG GP DN   H++DP 
Sbjct: 200 LWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPG 259

[Close]

BLAST of HG10020576.1 vs. ExPASy TrEMBL
Match: A0A0A0LTE5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G033310 PE=3 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.0e-134
Identity = 235/250 (94.00%), Postives = 241/250 (96.40%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           MATV+TQASA VF   AS SRFLSGSSGKFNRALSVKPTTSS+PN+FKVEAKKGEWLPGL
Sbjct: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
           PSP YLDGSLPGDNGFDPLGLAED ENLRWY QAELVNGRWAMLGVAGMVLPEV TN+GI
Sbjct: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           DVGYPGGIFNPLNFEPTLEA+EKEIANGRLAMLAFLGFIVQHNVTGKGPFDNF+QHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240

Query: 241 WHNTIVQTLR 249
           WHNTIVQTLR
Sbjct: 241 WHNTIVQTLR 250

[Close]

BLAST of HG10020576.1 vs. ExPASy TrEMBL
Match: A0A6J1GBT1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452545 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.5e-133
Identity = 235/251 (93.63%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           M+ V+ QASAAVF   AS SRFL GSSGKFNRALSVKPTTS VP+SFKVEAKKGEWLPGL
Sbjct: 1   MSIVMIQASAAVFRPSASRSRFLLGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
           PSPAYLDGSLPGDNGFDPLGLAED ENLRWYVQAELVNGRWAMLGVAGM+LPEVFT++GI
Sbjct: 61  PSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTIVQTLRG 250
           WHNTIVQTLRG
Sbjct: 241 WHNTIVQTLRG 251

[Close]

BLAST of HG10020576.1 vs. ExPASy TrEMBL
Match: A0A6J1KDI3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493358 PE=3 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 1.9e-133
Identity = 235/251 (93.63%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           M+ V+ QASAAVF   AS SRFLSGSSGKFNRALSVKPTTS VP+SFKVEAKKGEWLPGL
Sbjct: 1   MSIVMIQASAAVFRPSASRSRFLSGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
           PSPAYLDGSLPGDNGFDPLGLAED ENLRWYVQAELVNGRWAMLGVAGM+LPEVFT+ GI
Sbjct: 61  PSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSNGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTIVQTLRG 250
           WHNT+VQTLRG
Sbjct: 241 WHNTVVQTLRG 251

[Close]

BLAST of HG10020576.1 vs. ExPASy TrEMBL
Match: A0A6J1C5V9 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008702 PE=3 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 2.8e-132
Identity = 234/251 (93.23%), Postives = 239/251 (95.22%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           MAT +TQASAAVF   AS SRFLSGSSGKFNRALSVKPT SS+P  FKVEAKKGEWLPGL
Sbjct: 1   MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
           PSPAYLDGSL GDNGFDPLGLAED ENLRWYVQAELVNGRWAMLGVAGM+LPEVFT+ GI
Sbjct: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKXYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTIVQTLRG 250
           WHNTI+QTLRG
Sbjct: 241 WHNTIIQTLRG 251

[Close]

BLAST of HG10020576.1 vs. ExPASy TrEMBL
Match: A0A2C9VP65 (Chlorophyll a-b binding protein, chloroplastic OS=Manihot esculenta OX=3983 GN=MANES_06G091400 PE=3 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.1e-125
Identity = 219/251 (87.25%), Postives = 233/251 (92.83%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGEWLPGL 60
           MATV+TQASAAVF   AS SRFL+GSS K NR +S+KP  SS   SFKVEAKKGEWLPGL
Sbjct: 1   MATVITQASAAVFRPCASRSRFLTGSSSKLNREVSLKPMLSSPAASFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGI 120
           PSPAYL+GSLPGDNGFDPLGLAED ENL+WY+QAELVNGRWAMLGVAGM+LPEVFT  G+
Sbjct: 61  PSPAYLNGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTKIGV 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVP+WYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPQWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240
           +VGYPGGIFNPLNF PTLEAKEKE+ANGRLAMLAFLGF+VQHNVTGKGPFDN LQH+SDP
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDP 240

Query: 241 WHNTIVQTLRG 250
           WHNTIVQTLRG
Sbjct: 241 WHNTIVQTLRG 251

[Close]

BLAST of HG10020576.1 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 417.2 bits (1071), Expect = 9.6e-117
Identity = 203/249 (81.53%), Postives = 218/249 (87.55%), Query Frame = 0


Query: 1   MATVVTQASAAVF--LASSSRFLSGSSGKFNRALSVKPTTSSV-PNSFKVEAKKGEWLPG 60
           MATV T ASA++F    S  RFL+GSSG+ NR LS     SS   +SFKVEAKKGEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 61  LPSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFG 120
           L SP YL GSL GDNGFDPLGLAED ENL+W+VQAELVNGRWAMLGVAGM+LPEVFT  G
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
           IINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 181 NDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISD 240
            +VGYPGGIFNPLNF PT EAKEKE+ANGRLAMLAFLGF+VQHNVTGKGPF+N LQH+SD
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240

Query: 241 PWHNTIVQT 247
           PWHNTIVQT
Sbjct: 241 PWHNTIVQT 249

[Close]

BLAST of HG10020576.1 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 234.6 bits (597), Expect = 8.8e-62
Identity = 122/245 (49.80%), Postives = 151/245 (61.63%), Query Frame = 0


Query: 8   ASAAVFLASSSRFLSGSSGKFNRALSVKPTTSSVPNSFKVEAKKGE---WLPGLPSPAYL 67
           AS+A+   SS  FL G   +  + L+V P  S    S +  A   +   W PG   P +L
Sbjct: 7   ASSAIAAISSPSFLGGKKLRLKKKLTV-PAVSRPDASVRAVAADPDRPIWFPGSTPPEWL 66

Query: 68  DGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGIINVPKW 127
           DGSLPGD GFDPLGL+ D ++L+W VQAE+V+ RWAMLG AG+ +PE  T  GI+N P W
Sbjct: 67  DGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 126

Query: 128 YDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPG 187
           Y AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L   DVGYPG
Sbjct: 127 YTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPG 186

Query: 188 GI-FNPLNF-----EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 244
           G+ F+PL +         E + KEI NGRLAMLA +G   QH  TG GP DN   H++DP
Sbjct: 187 GLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 246

[Close]

BLAST of HG10020576.1 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 215.3 bits (547), Expect = 5.5e-56
Identity = 110/227 (48.46%), Postives = 149/227 (65.64%), Query Frame = 0


Query: 30  RALSVKPTTSSVPNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDRENLRWY 89
           R  SVK     +  +  VE  +  WLPGL  P YLDG+L GD GFDPLGL ED E+L+WY
Sbjct: 27  RISSVKAAGGGINPTVAVE--RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWY 86

Query: 90  VQAELVNGRWAMLGVAGMVLPEVFTNFGIINVPKWYDAGKAEY-FASSSTLFVIEFILFH 149
           VQAELV+ R+AMLGVAG++  ++    GI N+P WY+AG  ++ FAS+ TL V++F+L  
Sbjct: 87  VQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMG 146

Query: 150 YVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNDVGYPGG-IFNPLNFEPTLEA----KE 209
           + E +R+ D  +PGS  ++  F    + +L   + GYPGG + NPL     ++     K 
Sbjct: 147 FAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKL 206

Query: 210 KEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTL 248
           KEI NGRLAM+A LGF VQ +VT  GP DN ++H+S+PWH TI+QTL
Sbjct: 207 KEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of HG10020576.1 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 215.3 bits (547), Expect = 5.5e-56
Identity = 110/227 (48.46%), Postives = 149/227 (65.64%), Query Frame = 0


Query: 30  RALSVKPTTSSVPNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDRENLRWY 89
           R  SVK     +  +  VE  +  WLPGL  P YLDG+L GD GFDPLGL ED E+L+WY
Sbjct: 27  RISSVKAAGGGINPTVAVE--RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWY 86

Query: 90  VQAELVNGRWAMLGVAGMVLPEVFTNFGIINVPKWYDAGKAEY-FASSSTLFVIEFILFH 149
           VQAELV+ R+AMLGVAG++  ++    GI N+P WY+AG  ++ FAS+ TL V++F+L  
Sbjct: 87  VQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMG 146

Query: 150 YVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNDVGYPGG-IFNPLNFEPTLEA----KE 209
           + E +R+ D  +PGS  ++  F    + +L   + GYPGG + NPL     ++     K 
Sbjct: 147 FAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKL 206

Query: 210 KEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTL 248
           KEI NGRLAM+A LGF VQ +VT  GP DN ++H+S+PWH TI+QTL
Sbjct: 207 KEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of HG10020576.1 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-53
Identity = 95/193 (49.22%), Postives = 121/193 (62.69%), Query Frame = 0


Query: 54  WLPGLPSPAYLDGSLPGDNGFDPLGLAEDRENLRWYVQAELVNGRWAMLGVAGMVLPEVF 113
           W PG   P +LDGSLPGD GFDPLGL  D + L+W+ QAEL++ RWAML V G+++PE  
Sbjct: 68  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127

Query: 114 TNFGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 173
              G I    WYDAG  EYFA S+TLFV + +L  + E RRW D+  PGSV+ +P +   
Sbjct: 128 ERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHK 187

Query: 174 SLPPNDVGYPGGIFNPLNF------EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGP 233
             P  DVGYPGG++           EP +  + KEI NGRLAMLAFLGF  Q   T + P
Sbjct: 188 VNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDP 247

Query: 234 FDNFLQHISDPWH 241
            +N + H++DP H
Sbjct: 248 IENLMAHLADPGH 260

The following BLAST results are available for this feature:

BLAST of HG10020576.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137413.1	2.1e-134	94.00	chlorophyll a-b binding protein P4, chloroplastic [Cucumis sativus] >KGN64012.1 ...	[more]
XP_038894825.1	2.1e-134	94.42	chlorophyll a-b binding protein P4, chloroplastic-like [Benincasa hispida]	[more]
XP_023524863.1	3.6e-134	94.02	chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita pepo subsp. pe...	[more]
XP_022949090.1	3.1e-133	93.63	chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita moschata]	[more]
XP_022998805.1	4.0e-133	93.63	chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of HG10020576.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SQL2	3.7e-121	84.46	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
P27521	1.3e-115	81.53	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q36718	1.1e-85	66.52	Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulga...	[more]
Q9SYW8	1.2e-60	49.80	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P13869	1.8e-59	46.72	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of HG10020576.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTE5	1.0e-134	94.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1GBT1	1.5e-133	93.63	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KDI3	1.9e-133	93.63	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1C5V9	2.8e-132	93.23	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A2C9VP65	1.1e-125	87.25	Chlorophyll a-b binding protein, chloroplastic OS=Manihot esculenta OX=3983 GN=M...	[more]

BLAST of HG10020576.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47470.1	9.6e-117	81.53	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	8.8e-62	49.80	photosystem I light harvesting complex gene 2	[more]
AT1G45474.1	5.5e-56	48.46	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	5.5e-56	48.46	photosystem I light harvesting complex gene 5	[more]
AT1G19150.1	1.1e-53	49.22	photosystem I light harvesting complex gene 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 61..240 e-value: 5.8E-67 score: 227.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 61..220 e-value: 4.4E-49 score: 167.1
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..249
None	No IPR available	PANTHER	PTHR21649:SF109	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..249
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 51..247

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10020576	HG10020576	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10020576.1-cds	HG10020576.1-cds-Chr05:671520..671653	CDS
HG10020576.1-cds	HG10020576.1-cds-Chr05:671746..672161	CDS
HG10020576.1-cds	HG10020576.1-cds-Chr05:672245..672444	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10020576.1	HG10020576.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009409	response to cold
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009645	response to low light intensity stimulus
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019904	protein domain specific binding