HG10019358.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGAGTTTTCTAGCGTTGCTATCTTTTTTGACATCTTCTTTCATGCGGTTTTTATGTTCCGGTTCCTCCATAATTTCATCTTGTGATATTTTCATGTTATAAAGTTTCATTGTGGATATAATTATAGTGTATATTATAATTATATATTATTTTCTCCTCAATCTCTTTTCATGTTTGTCGAGATCACTTACCATTATCTTTTTCTTACACTTGTCATGATAGTGATTATTTTAATCTCACCTACCATTGAACAAAGTCTTTAATCATTGAATAGTCATAGTAAGAAGAGAGATTGAGAACAATAAACAAGCTAATGGATAATAAATTGAGAGTTGACAATGGTCGTTGGTAGTCCAATTTGATGAAATATGAGGCTGATTTCGTTGATAAAAACGAGAATTATGAACTAAACCCTATATTTCATGGCAAAATGAAATTATAATAAGAATAAGAGTTGTTTTCAAATATAGCAAAATGAGCTAAAATATTTACAAATATAACAAAATGTTATATCAGTGATACACATAATAATATATTAGTGTCTATTAGTGATAGACATAATAATCTATTAGTTTCTATCATTGATAGACAGTGATATCTTGATATATTTGAAAATACTTTTAGCAATTTTTGCCATTTAAAACAATTACCTAAAATTAATGATAATCTTGTTTTAAACTATATATTTTAGATTTAAAATGAAATTATAATAAAGATAATGATACAATCAAATTTAAAATAGTAAGAATTGGCCAGCTACGAGATGTATGTATTTAAAATGAAACTATAATAAAGATAAGGATAAAATCAATTTAAAAATTGCATGATTTAGTTAGAAGATTCTTTAGATCTAAAATTGGAGAATTTTCAAATTTAAATCTGGAATTTATGCCAAATATTTAAAAGAGGAAGTTAGTTCACACTAAAAATTTGAATGAAAATTGATAGGACTTGAGTTTAATGGATTAATTATAATGTAATTAAATGAGCTAATTTGGAGCATGTTAGAATTAACCGATTTGGGCTCTTCAACTTAAATTATGAGTTTGATGGATTATATAGGTAATAAATTAGCTGTTAAAAACATTTTTGGATTAATTAAAAATGTATTGTCATATGATATAGTGCTATATAGTTCTGAATAGTTTCGTGTTTGGCTATACTTCGGAATGAAAATATAATTAAAATTATTTGTGTTATAGGACCCAATTATCCTTTCTATTTTAAGCTGAACTTTGAGACGAGATCGAGGAAGAAGAAGGGGATCCTGGGGACTGATTGAATCAGAAACTAAGTAATGGCAGGCCAGAATGAGCAAGGGAAATCTGCATCTACGGAACAGTTTGTATACAGAATCAGTACATCCAAGGAGTGGGATGAATCACAGCGCGTTGGTCATATCTATGGAGGAGAGCTCGACAAGTCTTCCGGTTTCATTCATCTCAGTAACCTCAATCAGGTTCTTTCTCTAATCTCATCGGACTCTCTACTTTCCAGTCGTATAGAAGAATTTTGCTCTTTCCACAAACGATATTGCATTATATTCAGGAGGAATCGTGATTTCAGCTTGCATTCTGTTTGGTATTTGATTTGCGTATTTCATACACTTTCTTTCGGTTCCTTCCATCTAGGTTAATCCTTGTCTTCATTCCTAGATTTTTTGTTAATTGCTTATTTTAAAGTGGGTTGTGTTCATAGATTGTATTACAACCTTCGAACAACTTTTTTCATGCTACACTTATCGATTCTAAGCGGTTAATTAAGCTACCAAACTGACGTAAAAGTAGTTTGCAAGGTGAAATTGATAGCCAGTTTAGAGAAATCGAATGTAGTTTCTCCGAGATTTAATTGATGGGCATGGCAATATCCTAAAATCAATATTCTTCAGCTAATTTGAAAACCTTAAATTTAGGAGTGAACCAAAGATTAAATCACCCCATGATGAATTGTTTAACAGTGAGTCTTGGAACTGGTTTATGTCTTGCAGGTCCAGTCAACTTTGCAGAATTTCTTCCTGAATATCAAAGATGAATTGTATCTCTTCAAATTGAGGTCAAAAGGTACTGAAACACCTTTTTTTTTCCCTCTCGTGTCTGGAATTGTGCAATGAATATAAAAGGGGAGAGCATAAAATTCTTGTGATTTTGAACTGTCCTATTGCTCTACATGTGCATGTTTTGATTTTGTGATATGATGAACAACTATTACAATGGAAAGATTAAAGGAGACTTGGCTTCAAAAAGTGTTATTGTGCGAGCTAGCATTATAACCATCTAGTTTGTAGACTCCACCACGCAACACAATGGATATACGTATTACTGTATTAGCGAATTATATCCTTCATTAAATATCATTGGTTTAAGGCCCTGGCTATACTCCAAAACTCTGGCTCGTATGGAAAATGTTCTTAAGAATGCTTTCCGGTACTCAAGAGGCATGTTCTATTATTGAAAGTTAGCTTCATAGTCATTCGGTTTGACAAGATGAATCGTGAAATGAAACAAACTAAGTTCATATGGTCCCTGACTCCCTGTACTTTCAAATGCCTAAATTTTGTCCTTGTACTTTCAATAAAACATAAAATGAGTCCTTAGTTTATGTTTGTTTGAAGTGAATTTTTATAGAACTTGATCAACAACAATAATAATTTCTGCTCAAGAAAAAACACAATGAGAGTATGTTCCCAAAATTTATGAGTGAAGGCTAGTGGAGATTATTTTTTCTAACAGAAAAGTCTAACACTAAACCAACAGTAGAGACTAGTTTTAGGACTTATTAAAAGTGCAGGGACTAAATTTGGATATTTGAAAATATAGACTACAATTGAACAAGTCTCTAACTACATGGACCAAAATAGTACTTATACCAAAATTTTATTATCACCAACAGTTGACGGAGTCTTTGGCCTATTTTTTCCATTTTACATGTTATCAGTGTTTGGCCTTTTTTCAATTTTACATGTTCTTACATTGTCTATATTTGGTATTACATTAACCTTTTTCTTTGCAGCTAGGTGATGGATTGATTTATGAACTTGTGGATGGTTCCAATAGCTTCCCTCATTTCTATGGTCCGTCGCGAAGCTTCAGCCCTATCCCTATGGATGCAGTAACCAAAGCAGAAAAACTCACTTTTTCTGATGGTCGATTTGCTTGTAGTTTTCTCGAATAG ATGGGCCAGAATGAGCAAGGGAAATCTGCATCTACGGAACAGTTTGTATACAGAATCAGTACATCCAAGGAGTGGGATGAATCACAGCGCGTTGGTCATATCTATGGAGGAGAGCTCGACAAGTCTTCCGGTTTCATTCATCTCAGTAACCTCAATCAGCTAGGTGATGGATTGATTTATGAACTTGTGGATGGTTCCAATAGCTTCCCTCATTTCTATGGTCCGTCGCGAAGCTTCAGCCCTATCCCTATGGATGCAGTAACCAAAGCAGAAAAACTCACTTTTTCTGATGGTCGATTTGCTTGTAGTTTTCTCGAATAG ATGGGCCAGAATGAGCAAGGGAAATCTGCATCTACGGAACAGTTTGTATACAGAATCAGTACATCCAAGGAGTGGGATGAATCACAGCGCGTTGGTCATATCTATGGAGGAGAGCTCGACAAGTCTTCCGGTTTCATTCATCTCAGTAACCTCAATCAGCTAGGTGATGGATTGATTTATGAACTTGTGGATGGTTCCAATAGCTTCCCTCATTTCTATGGTCCGTCGCGAAGCTTCAGCCCTATCCCTATGGATGCAGTAACCAAAGCAGAAAAACTCACTTTTTCTGATGGTCGATTTGCTTGTAGTTTTCTCGAATAG MGQNEQGKSASTEQFVYRISTSKEWDESQRVGHIYGGELDKSSGFIHLSNLNQLGDGLIYELVDGSNSFPHFYGPSRSFSPIPMDAVTKAEKLTFSDGRFACSFLE Homology
BLAST of HG10019358.1 vs. NCBI nr
Match: XP_038905017.1 (uncharacterized protein LOC120091189 [Benincasa hispida]) HSP 1 Score: 190.3 bits (482), Expect = 8.7e-45 Identity = 97/130 (74.62%), Postives = 100/130 (76.92%), Query Frame = 0
BLAST of HG10019358.1 vs. NCBI nr
Match: XP_008447457.1 (PREDICTED: uncharacterized protein LOC103489901 [Cucumis melo] >KAA0038110.1 uncharacterized protein E6C27_scaffold36G003310 [Cucumis melo var. makuwa] >TYK20497.1 uncharacterized protein E5676_scaffold237G00710 [Cucumis melo var. makuwa]) HSP 1 Score: 181.4 bits (459), Expect = 4.0e-42 Identity = 92/129 (71.32%), Postives = 98/129 (75.97%), Query Frame = 0
BLAST of HG10019358.1 vs. NCBI nr
Match: XP_004150836.1 (uncharacterized protein LOC101207691 [Cucumis sativus] >KGN58541.1 hypothetical protein Csa_000840 [Cucumis sativus]) HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39 Identity = 88/129 (68.22%), Postives = 95/129 (73.64%), Query Frame = 0
BLAST of HG10019358.1 vs. NCBI nr
Match: KAG6606920.1 (hypothetical protein SDJN03_00262, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036624.1 hypothetical protein SDJN02_00243 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 167.9 bits (424), Expect = 4.6e-38 Identity = 87/132 (65.91%), Postives = 97/132 (73.48%), Query Frame = 0
BLAST of HG10019358.1 vs. NCBI nr
Match: XP_022998502.1 (uncharacterized protein LOC111493116 [Cucurbita maxima]) HSP 1 Score: 167.5 bits (423), Expect = 6.0e-38 Identity = 87/132 (65.91%), Postives = 97/132 (73.48%), Query Frame = 0
BLAST of HG10019358.1 vs. ExPASy TrEMBL
Match: A0A5D3DA97 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00710 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 2.0e-42 Identity = 92/129 (71.32%), Postives = 98/129 (75.97%), Query Frame = 0
BLAST of HG10019358.1 vs. ExPASy TrEMBL
Match: A0A1S3BHG9 (uncharacterized protein LOC103489901 OS=Cucumis melo OX=3656 GN=LOC103489901 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 2.0e-42 Identity = 92/129 (71.32%), Postives = 98/129 (75.97%), Query Frame = 0
BLAST of HG10019358.1 vs. ExPASy TrEMBL
Match: A0A0A0LER0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G669610 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 9.1e-40 Identity = 88/129 (68.22%), Postives = 95/129 (73.64%), Query Frame = 0
BLAST of HG10019358.1 vs. ExPASy TrEMBL
Match: A0A6J1K865 (uncharacterized protein LOC111493116 OS=Cucurbita maxima OX=3661 GN=LOC111493116 PE=4 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 2.9e-38 Identity = 87/132 (65.91%), Postives = 97/132 (73.48%), Query Frame = 0
BLAST of HG10019358.1 vs. ExPASy TrEMBL
Match: A0A6J1GAQ2 (uncharacterized protein LOC111452443 OS=Cucurbita moschata OX=3662 GN=LOC111452443 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 1.9e-37 Identity = 86/132 (65.15%), Postives = 96/132 (72.73%), Query Frame = 0
BLAST of HG10019358.1 vs. TAIR 10
Match: AT4G01897.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); Has 763 Blast hits to 763 proteins in 180 species: Archae - 0; Bacteria - 351; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). ) HSP 1 Score: 120.9 bits (302), Expect = 6.0e-28 Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|