HG10019266.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019266.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 19499119 .. 19499358 (-)
Sequence length	240
RNA-Seq Expression	HG10019266.1
Synteny	HG10019266.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCCAAGCTTTCTCCGGCTATCTCTAAACCCCAAGCAGATGATAATCTGCCACCCTCTACTCTATCTCTTGGTATCGAATCCCAAGCTCTCGACCCTTGTCCCCGATCCCAATCCTACCCGTTTTTATATGGGCCAAATGGAAAAAGTAGACTTCTGGATGCCCGCTTAGAGGGAGAGTTGGATGGGCACACACCATCAGCTATATGGACATGGAGCAAATGGAACCTCTTCTGA

mRNA sequence

ATGTCATCCAAGCTTTCTCCGGCTATCTCTAAACCCCAAGCAGATGATAATCTGCCACCCTCTACTCTATCTCTTGGTATCGAATCCCAAGCTCTCGACCCTTGTCCCCGATCCCAATCCTACCCGTTTTTATATGGGCCAAATGGAAAAAGTAGACTTCTGGATGCCCGCTTAGAGGGAGAGTTGGATGGGCACACACCATCAGCTATATGGACATGGAGCAAATGGAACCTCTTCTGA

Coding sequence (CDS)

ATGTCATCCAAGCTTTCTCCGGCTATCTCTAAACCCCAAGCAGATGATAATCTGCCACCCTCTACTCTATCTCTTGGTATCGAATCCCAAGCTCTCGACCCTTGTCCCCGATCCCAATCCTACCCGTTTTTATATGGGCCAAATGGAAAAAGTAGACTTCTGGATGCCCGCTTAGAGGGAGAGTTGGATGGGCACACACCATCAGCTATATGGACATGGAGCAAATGGAACCTCTTCTGA

Protein sequence

MSSKLSPAISKPQADDNLPPSTLSLGIESQALDPCPRSQSYPFLYGPNGKSRLLDARLEGELDGHTPSAIWTWSKWNLF

Homology

[Close]

BLAST of HG10019266.1 vs. NCBI nr
Match: TKS02681.1 (hypothetical protein D5086_0000160820 [Populus alba])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 6   SPAISKPQADDNLPPSTLSLGIESQALDPCPRSQSYPFLYGPNGKSRLLDARLEGELDGH 65
           SPAI +PQA DNLPPSTLSLGIESQAL+PCPR +SYPF YGPNGKSRL DARLEGELDGH
Sbjct: 65  SPAIPEPQAGDNLPPSTLSLGIESQALEPCPRPKSYPFSYGPNGKSRLPDARLEGELDGH 124

Query: 66  TPSAIWTWS 75
           TPSAI  W+
Sbjct: 125 TPSAICGWN 133

[Close]

BLAST of HG10019266.1 vs. ExPASy TrEMBL
Match: A0A4U5PZP9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000160820 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.1e-25
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 6   SPAISKPQADDNLPPSTLSLGIESQALDPCPRSQSYPFLYGPNGKSRLLDARLEGELDGH 65
           SPAI +PQA DNLPPSTLSLGIESQAL+PCPR +SYPF YGPNGKSRL DARLEGELDGH
Sbjct: 65  SPAIPEPQAGDNLPPSTLSLGIESQALEPCPRPKSYPFSYGPNGKSRLPDARLEGELDGH 124

Query: 66  TPSAIWTWS 75
           TPSAI  W+
Sbjct: 125 TPSAICGWN 133

The following BLAST results are available for this feature:

BLAST of HG10019266.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TKS02681.1	1.3e-24	84.06	hypothetical protein D5086_0000160820 [Populus alba]	[more]

BLAST of HG10019266.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019266.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5PZP9	6.1e-25	84.06	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000160820 PE=4 SV=1	[more]

BLAST of HG10019266.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10019266	HG10019266	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10019266.1-cds	HG10019266.1-cds-Chr04:19499119..19499358	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10019266.1	HG10019266.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion