HG10017590.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017590.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr03: 16410848 .. 16411027 (-)
Sequence length	180
RNA-Seq Expression	HG10017590.1
Synteny	HG10017590.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTATTGTTTCTTTGGACACTAGCCCTTTTGGTGCTGCCTCTACTCCTTCCGCCGTTGCCGCCGCCACCCATGGTGGTTCTCTTTGTGCCTCTCCTTATCATGATGCTTCTTATTTTCTTCGCCTTGTCGACTTCTCAACTTCCGACCACTACGATCGTGTCTAGAAGTTATTGA

mRNA sequence

ATGGCTTTATTGTTTCTTTGGACACTAGCCCTTTTGGTGCTGCCTCTACTCCTTCCGCCGTTGCCGCCGCCACCCATGGTGGTTCTCTTTGTGCCTCTCCTTATCATGATGCTTCTTATTTTCTTCGCCTTGTCGACTTCTCAACTTCCGACCACTACGATCGTGTCTAGAAGTTATTGA

Coding sequence (CDS)

ATGGCTTTATTGTTTCTTTGGACACTAGCCCTTTTGGTGCTGCCTCTACTCCTTCCGCCGTTGCCGCCGCCACCCATGGTGGTTCTCTTTGTGCCTCTCCTTATCATGATGCTTCTTATTTTCTTCGCCTTGTCGACTTCTCAACTTCCGACCACTACGATCGTGTCTAGAAGTTATTGA

Protein sequence

MALLFLWTLALLVLPLLLPPLPPPPMVVLFVPLLIMMLLIFFALSTSQLPTTTIVSRSY

Homology

[Close]

BLAST of HG10017590.1 vs. NCBI nr
Match: KGN54720.1 (hypothetical protein Csa_012521 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1   MALLFLWTLALLVLPLLLPPLPPPPMVVLFVPLLIMMLLIFFALSTSQLPTTTIVS 57
           M LLFLWTL+LLVLPLLLPPLPPPPMV LFVPL+IMMLLIFFALSTSQ+PTTT+ S
Sbjct: 69  MFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTTTVAS 124

[Close]

BLAST of HG10017590.1 vs. ExPASy TrEMBL
Match: A0A0A0KYG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G433470 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1   MALLFLWTLALLVLPLLLPPLPPPPMVVLFVPLLIMMLLIFFALSTSQLPTTTIVS 57
           M LLFLWTL+LLVLPLLLPPLPPPPMV LFVPL+IMMLLIFFALSTSQ+PTTT+ S
Sbjct: 69  MFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTTTVAS 124

[Close]

BLAST of HG10017590.1 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.2e-04
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  MALLFLWTLALLVLPLLLPPLPPPPMVVLFVPLLIMMLLIFFALSTSQLPTTTI 55
          +ALL   +L LL+LP  LPPLPPPP  +L +PLL+M+LLIF A S S  P+  +
Sbjct: 30 VALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPSLAV 83

The following BLAST results are available for this feature:

BLAST of HG10017590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54720.1	1.4e-12	87.50	hypothetical protein Csa_012521 [Cucumis sativus]	[more]

BLAST of HG10017590.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017590.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYG7	6.9e-13	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G433470 PE=4 SV=1	[more]

BLAST of HG10017590.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41230.1	1.2e-04	53.70	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 2..56
None	No IPR available	PANTHER	PTHR38928:SF7	SUBFAMILY NOT NAMED	coord: 2..56

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10017590	HG10017590	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10017590.1-cds	HG10017590.1-cds-Chr03:16410848..16411027	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10017590.1	HG10017590.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane