HG10017590.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017590.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 16410848 .. 16411027 (-)
Sequence length180
RNA-Seq ExpressionHG10017590.1
SyntenyHG10017590.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTATTGTTTCTTTGGACACTAGCCCTTTTGGTGCTGCCTCTACTCCTTCCGCCGTTGCCGCCGCCACCCATGGTGGTTCTCTTTGTGCCTCTCCTTATCATGATGCTTCTTATTTTCTTCGCCTTGTCGACTTCTCAACTTCCGACCACTACGATCGTGTCTAGAAGTTATTGA

mRNA sequence

ATGGCTTTATTGTTTCTTTGGACACTAGCCCTTTTGGTGCTGCCTCTACTCCTTCCGCCGTTGCCGCCGCCACCCATGGTGGTTCTCTTTGTGCCTCTCCTTATCATGATGCTTCTTATTTTCTTCGCCTTGTCGACTTCTCAACTTCCGACCACTACGATCGTGTCTAGAAGTTATTGA

Coding sequence (CDS)

ATGGCTTTATTGTTTCTTTGGACACTAGCCCTTTTGGTGCTGCCTCTACTCCTTCCGCCGTTGCCGCCGCCACCCATGGTGGTTCTCTTTGTGCCTCTCCTTATCATGATGCTTCTTATTTTCTTCGCCTTGTCGACTTCTCAACTTCCGACCACTACGATCGTGTCTAGAAGTTATTGA

Protein sequence

MALLFLWTLALLVLPLLLPPLPPPPMVVLFVPLLIMMLLIFFALSTSQLPTTTIVSRSY
Homology
BLAST of HG10017590.1 vs. NCBI nr
Match: KGN54720.1 (hypothetical protein Csa_012521 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1   MALLFLWTLALLVLPLLLPPLPPPPMVVLFVPLLIMMLLIFFALSTSQLPTTTIVS 57
           M LLFLWTL+LLVLPLLLPPLPPPPMV LFVPL+IMMLLIFFALSTSQ+PTTT+ S
Sbjct: 69  MFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTTTVAS 124

BLAST of HG10017590.1 vs. ExPASy TrEMBL
Match: A0A0A0KYG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G433470 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1   MALLFLWTLALLVLPLLLPPLPPPPMVVLFVPLLIMMLLIFFALSTSQLPTTTIVS 57
           M LLFLWTL+LLVLPLLLPPLPPPPMV LFVPL+IMMLLIFFALSTSQ+PTTT+ S
Sbjct: 69  MFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTTTVAS 124

BLAST of HG10017590.1 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.2e-04
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 1  MALLFLWTLALLVLPLLLPPLPPPPMVVLFVPLLIMMLLIFFALSTSQLPTTTI 55
          +ALL   +L LL+LP  LPPLPPPP  +L +PLL+M+LLIF A S S  P+  +
Sbjct: 30 VALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPSLAV 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54720.11.4e-1287.50hypothetical protein Csa_012521 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYG76.9e-1387.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G433470 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G41230.11.2e-0453.70unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38928ARGOS7coord: 2..56
NoneNo IPR availablePANTHERPTHR38928:SF7SUBFAMILY NOT NAMEDcoord: 2..56

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10017590HG10017590gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10017590.1-cdsHG10017590.1-cds-Chr03:16410848..16411027CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10017590.1HG10017590.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane