HG10015469.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015469.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein IDA-like
Location	Chr02: 26927741 .. 26927911 (-)
Sequence length	171
RNA-Seq Expression	HG10015469.1
Synteny	HG10015469.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACATCATGGGAACAATCCCGACATGTCGAATTCTTATTTCAATTACATGACTGGCTTCCGATATGTCGGTCAAACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGCCACAACTCTGTAGTTGACTCTGTTCCTCCCAATTGA

mRNA sequence

ATGGAACATCATGGGAACAATCCCGACATGTCGAATTCTTATTTCAATTACATGACTGGCTTCCGATATGTCGGTCAAACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGCCACAACTCTGTAGTTGACTCTGTTCCTCCCAATTGA

Coding sequence (CDS)

ATGGAACATCATGGGAACAATCCCGACATGTCGAATTCTTATTTCAATTACATGACTGGCTTCCGATATGTCGGTCAAACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGCCACAACTCTGTAGTTGACTCTGTTCCTCCCAATTGA

Protein sequence

MEHHGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN

Homology

[Close]

BLAST of HG10015469.1 vs. NCBI nr
Match: KAG6601330.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 4  HGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          H   PD+SN  FNY TGFRYVGQTFS+LPRGVPIPPSGPSDRHNS+VDS+PP+
Sbjct: 43 HELKPDLSN--FNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS 93

[Close]

BLAST of HG10015469.1 vs. NCBI nr
Match: KGN52035.1 (hypothetical protein Csa_008746 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-14
Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1  MEHHGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          ME    NPDMSNS   Y T FRY GQTFSFLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 35 MEFTEMNPDMSNS---YKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of HG10015469.1 vs. NCBI nr
Match: KAG7032113.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 5.5e-14
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 4  HGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          H   PD+ N  FNY TGFRYVGQTFS+LPRGVPIPPSGPSDRHNS+VDS+PP+
Sbjct: 38 HELKPDLLN--FNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS 88

[Close]

BLAST of HG10015469.1 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 8  PDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          PDMSNS +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 51 PDMSNSNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of HG10015469.1 vs. NCBI nr
Match: TYK09072.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 8   PDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
           PDMSNS +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 55  PDMSNSNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of HG10015469.1 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-04
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 28 FSFLPRGVPIPPSGPSDRHNSVVDSVP 55
          F +LP+GVPIPPS PS RHNS V+S+P
Sbjct: 50 FGYLPKGVPIPPSAPSKRHNSFVNSLP 76

[Close]

BLAST of HG10015469.1 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1  MEHHGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          ME    NPDMSNS   Y T FRY GQTFSFLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 35 MEFTEMNPDMSNS---YKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of HG10015469.1 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 8   PDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
           PDMSNS +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 55  PDMSNSNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of HG10015469.1 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 8  PDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          PDMSNS +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 51 PDMSNSNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of HG10015469.1 vs. ExPASy TrEMBL
Match: A0A5D2EBI1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G197000v1 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 17 YMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 53
          Y TGFRY GQ F+F P+G+PIPPSGPS RHNSVVDS
Sbjct: 64 YETGFRYQGQMFNFFPKGIPIPPSGPSKRHNSVVDS 99

[Close]

BLAST of HG10015469.1 vs. ExPASy TrEMBL
Match: A0A2P5SAI3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G180800v1 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 17 YMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 53
          Y TGFRY GQ F+F P+G+PIPPSGPS RHNSVVDS
Sbjct: 64 YETGFRYQGQMFNFFPKGIPIPPSGPSKRHNSVVDS 99

[Close]

BLAST of HG10015469.1 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 46.2 bits (108), Expect = 1.0e-05
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 28 FSFLPRGVPIPPSGPSDRHNSVVDSVP 55
          F +LP+GVPIPPS PS RHNS V+S+P
Sbjct: 50 FGYLPKGVPIPPSAPSKRHNSFVNSLP 76

[Close]

BLAST of HG10015469.1 vs. TAIR 10
Match: AT3G25655.1 (inflorescence deficient in abscission (IDA)-like 1 )

HSP 1 Score: 39.7 bits (91), Expect = 9.3e-04
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 0


Query: 20 GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSV 54
          GF + G+ F    + V +PPSGPS RHNSVV+++
Sbjct: 51 GFTFKGRVFHSFSKRVLVPPSGPSMRHNSVVNNL 84

The following BLAST results are available for this feature:

BLAST of HG10015469.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601330.1	1.1e-14	79.25	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KGN52035.1	3.2e-14	78.57	hypothetical protein Csa_008746 [Cucumis sativus]	[more]
KAG7032113.1	5.5e-14	77.36	Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0034518.1	6.0e-13	79.59	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
TYK09072.1	6.0e-13	79.59	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]

BLAST of HG10015469.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	1.4e-04	70.37	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of HG10015469.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR07	1.6e-14	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
A0A5D3CCP4	2.9e-13	79.59	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SV51	2.9e-13	79.59	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D2EBI1	6.3e-08	77.78	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G197000v1 PE=...	[more]
A0A2P5SAI3	6.3e-08	77.78	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G180800v1 PE...	[more]

BLAST of HG10015469.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	1.0e-05	70.37	Putative membrane lipoprotein	[more]
AT3G25655.1	9.3e-04	50.00	inflorescence deficient in abscission (IDA)-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..56
None	No IPR available	PANTHER	PTHR33599:SF18	PROTEIN IDA	coord: 12..56
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 12..56

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10015469	HG10015469	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10015469.1-cds	HG10015469.1-cds-Chr02:26927741..26927911	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10015469.1	HG10015469.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0016021	integral component of membrane