HG10015469 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10015469
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein IDA-like
LocationChr02: 26927741 .. 26927911 (-)
RNA-Seq ExpressionHG10015469
SyntenyHG10015469
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACATCATGGGAACAATCCCGACATGTCGAATTCTTATTTCAATTACATGACTGGCTTCCGATATGTCGGTCAAACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGCCACAACTCTGTAGTTGACTCTGTTCCTCCCAATTGA

mRNA sequence

ATGGAACATCATGGGAACAATCCCGACATGTCGAATTCTTATTTCAATTACATGACTGGCTTCCGATATGTCGGTCAAACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGCCACAACTCTGTAGTTGACTCTGTTCCTCCCAATTGA

Coding sequence (CDS)

ATGGAACATCATGGGAACAATCCCGACATGTCGAATTCTTATTTCAATTACATGACTGGCTTCCGATATGTCGGTCAAACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGCCACAACTCTGTAGTTGACTCTGTTCCTCCCAATTGA

Protein sequence

MEHHGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN
Homology
BLAST of HG10015469 vs. NCBI nr
Match: KAG6601330.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 4  HGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          H   PD+SN  FNY TGFRYVGQTFS+LPRGVPIPPSGPSDRHNS+VDS+PP+
Sbjct: 43 HELKPDLSN--FNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS 93

BLAST of HG10015469 vs. NCBI nr
Match: KGN52035.1 (hypothetical protein Csa_008746 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-14
Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 1  MEHHGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          ME    NPDMSNS   Y T FRY GQTFSFLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 35 MEFTEMNPDMSNS---YKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

BLAST of HG10015469 vs. NCBI nr
Match: KAG7032113.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 5.5e-14
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 4  HGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          H   PD+ N  FNY TGFRYVGQTFS+LPRGVPIPPSGPSDRHNS+VDS+PP+
Sbjct: 38 HELKPDLLN--FNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS 88

BLAST of HG10015469 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 8  PDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          PDMSNS +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 51 PDMSNSNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

BLAST of HG10015469 vs. NCBI nr
Match: TYK09072.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 8   PDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
           PDMSNS +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 55  PDMSNSNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

BLAST of HG10015469 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-04
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 0

Query: 28 FSFLPRGVPIPPSGPSDRHNSVVDSVP 55
          F +LP+GVPIPPS PS RHNS V+S+P
Sbjct: 50 FGYLPKGVPIPPSAPSKRHNSFVNSLP 76

BLAST of HG10015469 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 1  MEHHGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          ME    NPDMSNS   Y T FRY GQTFSFLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 35 MEFTEMNPDMSNS---YKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

BLAST of HG10015469 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 8   PDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
           PDMSNS +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 55  PDMSNSNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

BLAST of HG10015469 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 8  PDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 57
          PDMSNS +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 51 PDMSNSNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

BLAST of HG10015469 vs. ExPASy TrEMBL
Match: A0A5D2EBI1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G197000v1 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 17 YMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 53
          Y TGFRY GQ F+F P+G+PIPPSGPS RHNSVVDS
Sbjct: 64 YETGFRYQGQMFNFFPKGIPIPPSGPSKRHNSVVDS 99

BLAST of HG10015469 vs. ExPASy TrEMBL
Match: A0A2P5SAI3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G180800v1 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 17 YMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 53
          Y TGFRY GQ F+F P+G+PIPPSGPS RHNSVVDS
Sbjct: 64 YETGFRYQGQMFNFFPKGIPIPPSGPSKRHNSVVDS 99

BLAST of HG10015469 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 46.2 bits (108), Expect = 1.0e-05
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 0

Query: 28 FSFLPRGVPIPPSGPSDRHNSVVDSVP 55
          F +LP+GVPIPPS PS RHNS V+S+P
Sbjct: 50 FGYLPKGVPIPPSAPSKRHNSFVNSLP 76

BLAST of HG10015469 vs. TAIR 10
Match: AT3G25655.1 (inflorescence deficient in abscission (IDA)-like 1 )

HSP 1 Score: 39.7 bits (91), Expect = 9.3e-04
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 0

Query: 20 GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSV 54
          GF + G+ F    + V +PPSGPS RHNSVV+++
Sbjct: 51 GFTFKGRVFHSFSKRVLVPPSGPSMRHNSVVNNL 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6601330.11.1e-1479.25Protein IDA, partial [Cucurbita argyrosperma subsp. sororia][more]
KGN52035.13.2e-1478.57hypothetical protein Csa_008746 [Cucumis sativus][more]
KAG7032113.15.5e-1477.36Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAA0034518.16.0e-1379.59putative Membrane lipoprotein [Cucumis melo var. makuwa][more]
TYK09072.16.0e-1379.59putative Membrane lipoprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q8LAD71.4e-0470.37Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KR071.6e-1478.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1[more]
A0A5D3CCP42.9e-1379.59Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7SV512.9e-1379.59Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D2EBI16.3e-0877.78Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G197000v1 PE=... [more]
A0A2P5SAI36.3e-0877.78Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G180800v1 PE... [more]
Match NameE-valueIdentityDescription
AT1G68765.11.0e-0570.37Putative membrane lipoprotein [more]
AT3G25655.19.3e-0450.00inflorescence deficient in abscission (IDA)-like 1 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..56
NoneNo IPR availablePANTHERPTHR33599:SF18PROTEIN IDAcoord: 12..56
IPR039639Protein IDA-likePANTHERPTHR33599PROTEIN IDA-LIKE 5coord: 12..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10015469.1HG10015469.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010227 floral organ abscission
cellular_component GO:0005615 extracellular space
cellular_component GO:0016021 integral component of membrane