HG10010951.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010951.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mediator of RNA polymerase II transcription subunit 8 isoform X1
Location	Chr01: 769764 .. 769937 (-)
Sequence length	174
RNA-Seq Expression	HG10010951.1
Synteny	HG10010951.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAAGCCTTGCTAGCTGAACTGTGGTTTGAAAGAAACCTAGGAGTCTTCCATGATAAAGCTTCCCCTTGGTTAGATCGTTTTGAGTTCGCTCGGTTAAATACTTCTTCTTGGTGCACACTTTCAAGAGCTTTTGAAGATTACTCTATTCAGGAGTTAAACTTGAATTGA

mRNA sequence

ATGGTTAAAGCCTTGCTAGCTGAACTGTGGTTTGAAAGAAACCTAGGAGTCTTCCATGATAAAGCTTCCCCTTGGTTAGATCGTTTTGAGTTCGCTCGGTTAAATACTTCTTCTTGGTGCACACTTTCAAGAGCTTTTGAAGATTACTCTATTCAGGAGTTAAACTTGAATTGA

Coding sequence (CDS)

ATGGTTAAAGCCTTGCTAGCTGAACTGTGGTTTGAAAGAAACCTAGGAGTCTTCCATGATAAAGCTTCCCCTTGGTTAGATCGTTTTGAGTTCGCTCGGTTAAATACTTCTTCTTGGTGCACACTTTCAAGAGCTTTTGAAGATTACTCTATTCAGGAGTTAAACTTGAATTGA

Protein sequence

MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN

Homology

[Close]

BLAST of HG10010951.1 vs. NCBI nr
Match: KAA0068194.1 (mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M+ ALL+E WFERN  +F +KASPW    E AR+N SSWC+LS++FE +SIQ+++LN
Sbjct: 437 MLNALLSENWFERNQRIFQNKASPWTTHAEIARINASSWCSLSKSFEAFSIQDISLN 493

[Close]

BLAST of HG10010951.1 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 2   VKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           VKALLA+LWFERN  +F++KA+   DR E AR   SSWC LS  F  YS+ + NLN
Sbjct: 254 VKALLADLWFERNQRIFYNKATSCQDRLEAARRQASSWCLLSDPFRAYSLSDFNLN 309

[Close]

BLAST of HG10010951.1 vs. NCBI nr
Match: KAA0062564.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M KALL+++WFE N  +F  K   W +R + A+ N ++WC L++ F DYSIQ+L++N
Sbjct: 637 MSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVN 693

[Close]

BLAST of HG10010951.1 vs. NCBI nr
Match: TYK28784.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M KALL+++WFE N  +F  K   W +R + A+ N ++WC L++ F DYSIQ+L++N
Sbjct: 590 MSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVN 646

[Close]

BLAST of HG10010951.1 vs. NCBI nr
Match: KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   KALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           KALL E+W ERN  +FHDKA    +    A LN ++WC+L + F +YSIQ++ LN
Sbjct: 324 KALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYSIQDICLN 378

[Close]

BLAST of HG10010951.1 vs. ExPASy TrEMBL
Match: A0A5A7VLA2 (Mediator of RNA polymerase II transcription subunit 8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001760 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-12
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M+ ALL+E WFERN  +F +KASPW    E AR+N SSWC+LS++FE +SIQ+++LN
Sbjct: 437 MLNALLSENWFERNQRIFQNKASPWTTHAEIARINASSWCSLSKSFEAFSIQDISLN 493

[Close]

BLAST of HG10010951.1 vs. ExPASy TrEMBL
Match: A0A5D3DZ52 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001490 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M KALL+++WFE N  +F  K   W +R + A+ N ++WC L++ F DYSIQ+L++N
Sbjct: 590 MSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVN 646

[Close]

BLAST of HG10010951.1 vs. ExPASy TrEMBL
Match: A0A5A7V5N8 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00520 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M KALL+++WFE N  +F  K   W +R + A+ N ++WC L++ F DYSIQ+L++N
Sbjct: 637 MSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVN 693

[Close]

BLAST of HG10010951.1 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   KALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           KALL E+W ERN  +FHDKA    +    A LN ++WC+L + F +YSIQ++ LN
Sbjct: 324 KALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYSIQDICLN 378

[Close]

BLAST of HG10010951.1 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   KALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           KALL E+W ERN  +FHDKA    +    A LN ++WC+L + F +YSIQ++ LN
Sbjct: 324 KALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYSIQDICLN 378

The following BLAST results are available for this feature:

BLAST of HG10010951.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068194.1	2.0e-11	57.89	mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis melo v...	[more]
XP_038903695.1	1.2e-08	57.14	uncharacterized protein LOC120090219 [Benincasa hispida]	[more]
KAA0062564.1	2.3e-07	45.61	GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa]	[more]
TYK28784.1	2.3e-07	45.61	GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0035739.1	3.3e-06	49.09	hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]	[more]

BLAST of HG10010951.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10010951.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLA2	9.6e-12	57.89	Mediator of RNA polymerase II transcription subunit 8 isoform X1 OS=Cucumis melo...	[more]
A0A5D3DZ52	1.1e-07	45.61	GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7V5N8	1.1e-07	45.61	GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5A7T2Y0	1.6e-06	49.09	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3DE60	1.6e-06	49.09	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of HG10010951.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10010951	HG10010951	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10010951.1-cds	HG10010951.1-cds-Chr01:769764..769937	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10010951.1	HG10010951.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0019538	protein metabolic process
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0008233	peptidase activity