HG10010951 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010951
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mediator of RNA polymerase II transcription subunit 8 isoform X1
Location	Chr01: 769764 .. 769937 (-)
RNA-Seq Expression	HG10010951
Synteny	HG10010951

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAAGCCTTGCTAGCTGAACTGTGGTTTGAAAGAAACCTAGGAGTCTTCCATGATAAAGCTTCCCCTTGGTTAGATCGTTTTGAGTTCGCTCGGTTAAATACTTCTTCTTGGTGCACACTTTCAAGAGCTTTTGAAGATTACTCTATTCAGGAGTTAAACTTGAATTGA

mRNA sequence

ATGGTTAAAGCCTTGCTAGCTGAACTGTGGTTTGAAAGAAACCTAGGAGTCTTCCATGATAAAGCTTCCCCTTGGTTAGATCGTTTTGAGTTCGCTCGGTTAAATACTTCTTCTTGGTGCACACTTTCAAGAGCTTTTGAAGATTACTCTATTCAGGAGTTAAACTTGAATTGA

Coding sequence (CDS)

ATGGTTAAAGCCTTGCTAGCTGAACTGTGGTTTGAAAGAAACCTAGGAGTCTTCCATGATAAAGCTTCCCCTTGGTTAGATCGTTTTGAGTTCGCTCGGTTAAATACTTCTTCTTGGTGCACACTTTCAAGAGCTTTTGAAGATTACTCTATTCAGGAGTTAAACTTGAATTGA

Protein sequence

MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN

Homology

[Close]

BLAST of HG10010951 vs. NCBI nr
Match: KAA0068194.1 (mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M+ ALL+E WFERN  +F +KASPW    E AR+N SSWC+LS++FE +SIQ+++LN
Sbjct: 437 MLNALLSENWFERNQRIFQNKASPWTTHAEIARINASSWCSLSKSFEAFSIQDISLN 493

[Close]

BLAST of HG10010951 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 2   VKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           VKALLA+LWFERN  +F++KA+   DR E AR   SSWC LS  F  YS+ + NLN
Sbjct: 254 VKALLADLWFERNQRIFYNKATSCQDRLEAARRQASSWCLLSDPFRAYSLSDFNLN 309

[Close]

BLAST of HG10010951 vs. NCBI nr
Match: KAA0062564.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M KALL+++WFE N  +F  K   W +R + A+ N ++WC L++ F DYSIQ+L++N
Sbjct: 637 MSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVN 693

[Close]

BLAST of HG10010951 vs. NCBI nr
Match: TYK28784.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M KALL+++WFE N  +F  K   W +R + A+ N ++WC L++ F DYSIQ+L++N
Sbjct: 590 MSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVN 646

[Close]

BLAST of HG10010951 vs. NCBI nr
Match: KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   KALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           KALL E+W ERN  +FHDKA    +    A LN ++WC+L + F +YSIQ++ LN
Sbjct: 324 KALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYSIQDICLN 378

[Close]

BLAST of HG10010951 vs. ExPASy TrEMBL
Match: A0A5A7VLA2 (Mediator of RNA polymerase II transcription subunit 8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001760 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-12
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M+ ALL+E WFERN  +F +KASPW    E AR+N SSWC+LS++FE +SIQ+++LN
Sbjct: 437 MLNALLSENWFERNQRIFQNKASPWTTHAEIARINASSWCSLSKSFEAFSIQDISLN 493

[Close]

BLAST of HG10010951 vs. ExPASy TrEMBL
Match: A0A5D3DZ52 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001490 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M KALL+++WFE N  +F  K   W +R + A+ N ++WC L++ F DYSIQ+L++N
Sbjct: 590 MSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVN 646

[Close]

BLAST of HG10010951 vs. ExPASy TrEMBL
Match: A0A5A7V5N8 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00520 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MVKALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           M KALL+++WFE N  +F  K   W +R + A+ N ++WC L++ F DYSIQ+L++N
Sbjct: 637 MSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVN 693

[Close]

BLAST of HG10010951 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   KALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           KALL E+W ERN  +FHDKA    +    A LN ++WC+L + F +YSIQ++ LN
Sbjct: 324 KALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYSIQDICLN 378

[Close]

BLAST of HG10010951 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   KALLAELWFERNLGVFHDKASPWLDRFEFARLNTSSWCTLSRAFEDYSIQELNLN 58
           KALL E+W ERN  +FHDKA    +    A LN ++WC+L + F +YSIQ++ LN
Sbjct: 324 KALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYSIQDICLN 378

The following BLAST results are available for this feature:

BLAST of HG10010951 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068194.1	2.0e-11	57.89	mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis melo v...	[more]
XP_038903695.1	1.2e-08	57.14	uncharacterized protein LOC120090219 [Benincasa hispida]	[more]
KAA0062564.1	2.3e-07	45.61	GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa]	[more]
TYK28784.1	2.3e-07	45.61	GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0035739.1	3.3e-06	49.09	hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]	[more]

BLAST of HG10010951 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10010951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLA2	9.6e-12	57.89	Mediator of RNA polymerase II transcription subunit 8 isoform X1 OS=Cucumis melo...	[more]
A0A5D3DZ52	1.1e-07	45.61	GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7V5N8	1.1e-07	45.61	GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5A7T2Y0	1.6e-06	49.09	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3DE60	1.6e-06	49.09	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of HG10010951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010951.1	HG10010951.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0019538	protein metabolic process
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0008233	peptidase activity